Wall clock time and date at job start Mon Mar 30 2020 01:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38400 * 119.82691 * 2 1 4 4 C 1.37891 * 120.17316 * 180.27807 * 3 2 1 5 5 C 1.39855 * 119.82176 * 359.44249 * 4 3 2 6 6 C 1.47165 * 120.17018 * 180.29982 * 5 4 3 7 7 O 1.21249 * 120.00388 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99789 * 179.97438 * 6 5 4 9 9 O 1.45201 * 109.47195 * 179.97438 * 8 6 5 10 10 C 1.34228 * 117.00457 * 179.97438 * 9 8 6 11 11 O 1.20823 * 119.99842 * 0.02562 * 10 9 8 12 12 C 1.50694 * 120.00362 * 180.02562 * 10 9 8 13 13 H 1.09006 * 109.47286 * 60.00037 * 12 10 9 14 14 C 1.53007 * 109.47416 * 300.00352 * 12 10 9 15 15 C 1.50701 * 109.47614 * 180.02562 * 12 10 9 16 16 H 1.08003 * 119.99461 * 35.09670 * 15 12 10 17 17 C 1.37870 * 120.00393 * 215.10532 * 15 12 10 18 18 N 1.31513 * 120.00167 * 184.90868 * 17 15 12 19 19 Si 1.86803 * 119.99998 * 4.90715 * 17 15 12 20 20 H 1.48504 * 109.47116 * 84.82360 * 19 17 15 21 21 H 1.48493 * 109.47299 * 204.82567 * 19 17 15 22 22 H 1.48497 * 109.46928 * 324.82578 * 19 17 15 23 23 C 1.39851 * 119.65992 * 0.27755 * 5 4 3 24 24 C 1.37892 * 119.82366 * 0.02562 * 23 5 4 25 25 H 1.08996 * 109.47127 * 270.27901 * 1 2 3 26 26 H 1.09002 * 109.46893 * 30.28121 * 1 2 3 27 27 H 1.08995 * 109.46661 * 150.27842 * 1 2 3 28 28 H 1.07994 * 119.91756 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.09151 * 179.71494 * 4 3 2 30 30 H 1.08995 * 109.47338 * 299.99657 * 8 6 5 31 31 H 1.09004 * 109.47542 * 60.00108 * 8 6 5 32 32 H 1.09000 * 109.46750 * 295.06519 * 14 12 10 33 33 H 1.09004 * 109.46480 * 55.05503 * 14 12 10 34 34 H 1.08995 * 109.47320 * 175.05529 * 14 12 10 35 35 H 0.96999 * 119.99894 * 180.02562 * 18 17 15 36 36 H 1.07998 * 120.09052 * 180.02562 * 23 5 4 37 37 H 1.07996 * 119.91729 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5743 1.2090 -0.0058 5 6 4.2771 -0.0001 0.0001 6 6 5.7488 -0.0001 0.0007 7 8 6.3551 1.0499 -0.0045 8 6 6.5022 -1.3052 0.0077 9 8 7.9298 -1.0400 0.0062 10 6 8.7475 -2.1044 0.0125 11 8 8.2857 -3.2209 0.0184 12 6 10.2415 -1.9070 0.0120 13 1 10.5340 -1.3451 0.8991 14 6 10.6532 -1.1320 -1.2414 15 6 10.9257 -3.2498 0.0191 16 1 10.4891 -4.0810 -0.5147 17 6 12.1087 -3.4171 0.7070 18 7 12.7557 -4.5598 0.6345 19 14 12.7929 -2.0206 1.7420 20 1 12.1669 -2.0496 3.0884 21 1 14.2633 -2.1783 1.8763 22 1 12.4921 -0.7236 1.0842 23 6 3.5743 -1.2091 0.0060 24 6 2.1954 -1.2008 0.0054 25 1 -0.3633 0.0050 1.0276 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3632 -0.8925 -0.5095 28 1 1.6513 2.1335 -0.0004 29 1 4.1101 2.1467 -0.0104 30 1 6.2386 -1.8722 0.9005 31 1 6.2393 -1.8814 -0.8795 32 1 10.4404 -1.7323 -2.1259 33 1 10.0922 -0.1988 -1.2920 34 1 11.7200 -0.9128 -1.1989 35 1 13.5878 -4.6776 1.1187 36 1 4.1100 -2.1469 0.0110 37 1 1.6511 -2.1336 0.0103 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327175501.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:22 Heat of formation + Delta-G solvation = -126.028009 kcal Electronic energy + Delta-G solvation = -20226.944669 eV Core-core repulsion = 16933.454159 eV Total energy + Delta-G solvation = -3293.490510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.71435 -40.87758 -39.41596 -37.40737 -35.83156 -34.07771 -33.47427 -32.16438 -30.47636 -27.94695 -27.31648 -25.04750 -23.67402 -23.28570 -21.52028 -20.95620 -19.32853 -18.50176 -17.99442 -17.64746 -17.43192 -16.63229 -16.23334 -16.01777 -15.86637 -15.37366 -14.95979 -14.66141 -14.56924 -14.49136 -14.42976 -13.86044 -13.78078 -13.08653 -13.01114 -13.00253 -12.87714 -12.67436 -12.60006 -12.28678 -11.98181 -11.84463 -11.81115 -11.38824 -11.21261 -10.87658 -10.78613 -10.01841 -9.75315 -8.34802 -6.43867 -0.46389 0.37214 1.21982 1.29457 1.36591 1.38542 1.48329 1.56174 2.30534 2.72980 2.82808 3.04278 3.68213 3.89041 3.93655 4.00332 4.01088 4.08228 4.12820 4.31545 4.35632 4.40572 4.64073 4.74856 4.76469 4.80223 4.85781 5.03206 5.05351 5.21303 5.24972 5.28577 5.36981 5.44401 5.45912 5.55482 5.90331 6.17613 6.28943 6.64660 6.92512 7.20364 8.81663 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.039589 B = 0.003287 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.101456 B = 8516.254165 C = 8869.456220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.050 4.050 3 C -0.137 4.137 4 C -0.066 4.066 5 C -0.190 4.190 6 C 0.406 3.594 7 O -0.468 6.468 8 C 0.006 3.994 9 O -0.353 6.353 10 C 0.470 3.530 11 O -0.530 6.530 12 C 0.018 3.982 13 H 0.078 0.922 14 C -0.129 4.129 15 C -0.516 4.516 16 H 0.036 0.964 17 C 0.019 3.981 18 N -0.939 5.939 19 Si 0.936 3.064 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.231 1.231 23 C -0.072 4.072 24 C -0.137 4.137 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.152 0.848 29 H 0.129 0.871 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.272 0.728 36 H 0.144 0.856 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.142 12.478 -0.458 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.050 4.050 3 C -0.154 4.154 4 C -0.084 4.084 5 C -0.191 4.191 6 C 0.285 3.715 7 O -0.344 6.344 8 C -0.068 4.068 9 O -0.270 6.270 10 C 0.315 3.685 11 O -0.418 6.418 12 C -0.002 4.002 13 H 0.096 0.904 14 C -0.186 4.186 15 C -0.554 4.554 16 H 0.055 0.945 17 C -0.179 4.179 18 N -0.577 5.577 19 Si 0.758 3.242 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.154 1.154 23 C -0.090 4.090 24 C -0.154 4.154 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.170 0.830 29 H 0.147 0.853 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.162 0.838 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -24.835 12.594 -0.416 27.849 hybrid contribution 0.720 -0.340 0.443 0.912 sum -24.114 12.254 0.026 27.049 Atomic orbital electron populations 1.20972 0.88512 1.04384 1.03745 1.20664 0.98124 0.92726 0.93530 1.21316 0.92981 0.99396 1.01750 1.21503 0.95136 0.97195 0.94568 1.20126 0.91950 0.96075 1.10969 1.22448 0.89364 0.88760 0.70960 1.90532 1.71789 1.35190 1.36891 1.23534 0.78630 0.98321 1.06298 1.86644 1.17902 1.37995 1.84501 1.24927 0.91248 0.81938 0.70436 1.90527 1.77966 1.26983 1.46354 1.19179 0.83591 0.97928 0.99467 0.90418 1.21835 1.01961 0.98513 0.96330 1.20783 1.06733 0.94898 1.32962 0.94547 1.25916 0.96452 0.98601 0.96949 1.70018 1.17370 1.26940 1.43385 0.85898 0.77940 0.80691 0.79651 1.19107 1.20285 1.15423 1.21720 0.95424 0.97035 0.94784 1.21389 0.93400 0.99315 1.01327 0.89543 0.90079 0.89997 0.82987 0.85267 0.86630 0.86548 0.93409 0.91597 0.91555 0.91922 0.83782 0.82756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.00 71.24 0.71 -0.02 16 2 C -0.05 -0.62 5.89 -19.78 -0.12 -0.74 16 3 C -0.14 -1.95 9.68 22.23 0.22 -1.73 16 4 C -0.07 -1.30 9.60 22.58 0.22 -1.09 16 5 C -0.19 -4.22 5.87 -20.15 -0.12 -4.34 16 6 C 0.41 11.61 7.20 28.03 0.20 11.81 16 7 O -0.47 -16.47 16.50 15.87 0.26 -16.21 16 8 C 0.01 0.19 4.56 71.24 0.32 0.51 16 9 O -0.35 -13.95 9.56 -45.04 -0.43 -14.38 16 10 C 0.47 21.69 7.25 71.23 0.52 22.21 16 11 O -0.53 -27.07 15.52 21.97 0.34 -26.73 16 12 C 0.02 0.86 2.41 -12.28 -0.03 0.83 16 13 H 0.08 3.55 5.29 -2.38 -0.01 3.54 16 14 C -0.13 -5.30 9.14 71.98 0.66 -4.64 16 15 C -0.52 -30.22 8.36 25.60 0.21 -30.01 16 16 H 0.04 2.44 7.62 -2.91 -0.02 2.42 16 17 C 0.02 1.13 5.47 84.65 0.46 1.59 16 18 N -0.94 -58.50 13.96 21.44 0.30 -58.20 16 19 Si 0.94 42.47 26.99 68.60 1.85 44.32 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.23 -9.37 6.82 99.48 0.68 -8.70 16 23 C -0.07 -1.24 9.47 22.58 0.21 -1.03 16 24 C -0.14 -1.83 9.68 22.23 0.22 -1.61 16 25 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.08 0.35 8.08 -2.39 -0.02 0.34 16 27 H 0.08 0.36 8.08 -2.39 -0.02 0.34 16 28 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 29 H 0.13 2.63 7.65 -2.91 -0.02 2.61 16 30 H 0.12 3.13 8.08 -2.39 -0.02 3.11 16 31 H 0.12 3.12 8.08 -2.38 -0.02 3.10 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 2.37 8.00 -2.39 -0.02 2.35 16 34 H 0.07 2.61 8.14 -2.39 -0.02 2.60 16 35 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 36 H 0.14 2.14 7.05 -2.91 -0.02 2.12 16 37 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -75.45 324.89 7.05 -68.40 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.04 Total: 11.07 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 3.69 Total: -8.26 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.30 Total: -58.20 kcal Atomic # 8 Polarization: -57.50 SS G_CDS: 0.17 Total: -57.33 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.85 Total: 44.32 kcal Total: -75.45 7.05 -68.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327175501.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.632 kcal (2) G-P(sol) polarization free energy of solvation -75.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds