Wall clock time and date at job start Mon Mar 30 2020 01:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99962 * 2 1 4 4 H 1.48510 * 109.47031 * 239.99817 * 3 2 1 5 5 H 1.48500 * 109.47510 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47409 * 119.99951 * 3 2 1 7 7 C 1.37872 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99656 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00365 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47045 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.46980 * 180.02562 * 10 9 7 12 12 C 1.34715 * 117.00094 * 179.97438 * 11 10 9 13 13 O 1.21471 * 119.99800 * 359.97438 * 12 11 10 14 14 C 1.47725 * 120.00295 * 179.72680 * 12 11 10 15 15 C 1.39500 * 120.00292 * 359.71658 * 14 12 11 16 16 C 1.37925 * 119.72684 * 179.80283 * 15 14 12 17 17 C 1.38237 * 120.02522 * 0.57498 * 16 15 14 18 18 C 1.38714 * 120.60137 * 359.78204 * 17 16 15 19 19 C 1.37656 * 119.96964 * 359.75848 * 18 17 16 20 20 C 1.50638 * 121.57651 * 180.63277 * 19 18 17 21 21 O 1.42712 * 110.28890 * 343.78560 * 20 19 18 22 22 C 1.43211 * 113.14307 * 51.66229 * 21 20 19 23 23 C 1.50765 * 118.71132 * 179.51188 * 18 17 16 24 24 H 0.97002 * 119.99939 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47336 * 59.99637 * 9 7 2 26 26 H 1.08999 * 109.46911 * 299.99255 * 9 7 2 27 27 H 1.08997 * 109.47282 * 60.00186 * 10 9 7 28 28 H 1.09002 * 109.47256 * 299.99413 * 10 9 7 29 29 H 1.08001 * 120.14034 * 0.03391 * 15 14 12 30 30 H 1.07995 * 119.99026 * 180.34975 * 16 15 14 31 31 H 1.08000 * 119.69822 * 179.75842 * 17 16 15 32 32 H 1.09000 * 109.32871 * 104.03283 * 20 19 18 33 33 H 1.08998 * 109.33781 * 223.52744 * 20 19 18 34 34 H 1.09001 * 109.63642 * 169.76919 * 22 21 20 35 35 H 1.08997 * 109.80354 * 49.26073 * 22 21 20 36 36 H 1.08999 * 109.42296 * 282.98834 * 23 18 17 37 37 H 1.09002 * 109.41927 * 42.86431 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5192 -4.9195 -0.0001 12 6 2.2529 -6.0493 -0.0007 13 8 3.4659 -5.9858 -0.0012 14 6 1.5822 -7.3656 0.0048 15 6 0.1892 -7.4387 0.0165 16 6 -0.4310 -8.6706 0.0174 17 6 0.3269 -9.8266 0.0188 18 6 1.7126 -9.7625 0.0146 19 6 2.3444 -8.5396 0.0041 20 6 3.8465 -8.4278 -0.0149 21 8 4.4399 -9.6721 0.3542 22 6 3.9402 -10.7805 -0.4026 23 6 2.4972 -11.0498 0.0275 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8904 27 1 2.8718 -3.6043 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 -0.4013 -6.5344 0.0211 30 1 -1.5092 -8.7321 0.0208 31 1 -0.1642 -10.7885 0.0234 32 1 4.1753 -8.1545 -1.0175 33 1 4.1599 -7.6559 0.6880 34 1 4.5510 -11.6621 -0.2079 35 1 3.9673 -10.5437 -1.4661 36 1 2.4911 -11.4680 1.0341 37 1 2.0407 -11.7594 -0.6626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327182563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:29 Heat of formation + Delta-G solvation = -117.029846 kcal Electronic energy + Delta-G solvation = -20642.936404 eV Core-core repulsion = 17349.836084 eV Total energy + Delta-G solvation = -3293.100320 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.86718 -39.45750 -37.61228 -36.23090 -33.44602 -33.21863 -31.84384 -30.53238 -29.65924 -26.05094 -25.16727 -24.06451 -23.73664 -21.10758 -20.66289 -20.23179 -17.63057 -16.98479 -16.50736 -16.26061 -16.14830 -15.85692 -15.59366 -15.36355 -14.57269 -14.26230 -14.02709 -13.75807 -13.38486 -12.91805 -12.79671 -12.45692 -12.33505 -12.15121 -11.80204 -11.67691 -11.26177 -11.08928 -10.88343 -10.75770 -10.70423 -10.14680 -9.83941 -9.69501 -9.62542 -9.33503 -9.05343 -8.81763 -8.45717 -6.12044 -4.16617 0.61234 1.10670 2.66313 3.05856 3.29426 3.33465 3.37138 3.58681 3.75492 4.34510 4.37329 4.46755 4.58169 4.77109 4.88442 4.94674 5.08364 5.16653 5.24608 5.31128 5.39011 5.49064 5.58458 5.64011 5.78340 5.83900 6.04131 6.06181 6.12191 6.21992 6.31137 6.60056 6.64032 6.89935 6.98506 7.52590 7.59438 7.83981 8.11078 8.22227 8.88619 9.47910 10.99447 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.034596 B = 0.003422 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.141218 B = 8181.043211 C = 8939.107084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.350 6.350 12 C 0.500 3.500 13 O -0.512 6.512 14 C -0.115 4.115 15 C -0.058 4.058 16 C -0.132 4.132 17 C -0.086 4.086 18 C -0.095 4.095 19 C -0.057 4.057 20 C 0.093 3.907 21 O -0.377 6.377 22 C 0.053 3.947 23 C -0.111 4.111 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.145 0.855 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.073 0.927 33 H 0.135 0.865 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.083 -22.942 -0.988 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.266 6.266 12 C 0.346 3.654 13 O -0.404 6.404 14 C -0.116 4.116 15 C -0.077 4.077 16 C -0.150 4.150 17 C -0.104 4.104 18 C -0.095 4.095 19 C -0.058 4.058 20 C 0.018 3.982 21 O -0.295 6.295 22 C -0.024 4.024 23 C -0.148 4.148 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.163 0.837 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.091 0.909 33 H 0.152 0.848 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.413 -22.749 -0.844 22.809 hybrid contribution 0.117 1.064 -0.233 1.096 sum 1.530 -21.685 -1.077 21.766 Atomic orbital electron populations 1.69962 1.06103 1.27134 1.49659 1.24977 0.94925 0.99397 0.94812 0.86522 0.79481 0.82421 0.78813 1.20050 1.21116 1.20031 1.20937 0.93170 0.90092 1.52387 0.92263 1.19170 0.94184 0.88967 0.98895 1.23706 0.96453 0.78389 1.01133 1.86571 1.41929 1.15589 1.82475 1.21108 0.85606 0.85571 0.73157 1.90725 1.15020 1.88026 1.46658 1.19121 0.94004 0.90082 1.08437 1.21578 0.93168 0.99144 0.93767 1.21141 1.00444 0.91961 1.01476 1.21311 0.92915 0.98905 0.97302 1.19394 0.93876 0.93937 1.02267 1.20329 0.97292 0.91616 0.96566 1.22009 0.86899 0.86144 1.03197 1.88138 1.63889 1.15754 1.61725 1.22624 0.93638 0.90556 0.95553 1.21105 0.95843 0.94526 1.03317 0.92632 0.95338 0.95310 0.92088 0.92126 0.83703 0.84918 0.85426 0.90898 0.84794 0.88387 0.92658 0.89558 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.08 1.67 5.41 37.16 0.20 1.87 16 11 O -0.35 -7.01 9.46 -40.53 -0.38 -7.39 16 12 C 0.50 9.05 7.86 34.61 0.27 9.33 16 13 O -0.51 -9.89 12.95 -19.24 -0.25 -10.14 16 14 C -0.12 -1.73 5.88 -104.90 -0.62 -2.35 16 15 C -0.06 -0.76 9.61 -39.23 -0.38 -1.13 16 16 C -0.13 -1.35 10.03 -39.70 -0.40 -1.75 16 17 C -0.09 -0.82 9.66 -39.41 -0.38 -1.20 16 18 C -0.09 -1.05 5.77 -104.63 -0.60 -1.65 16 19 C -0.06 -0.78 5.84 -104.22 -0.61 -1.39 16 20 C 0.09 1.30 5.20 35.98 0.19 1.49 16 21 O -0.38 -4.88 10.80 -35.23 -0.38 -5.26 16 22 C 0.05 0.48 6.85 37.14 0.25 0.74 16 23 C -0.11 -0.92 6.00 -27.87 -0.17 -1.08 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.15 1.86 7.60 -52.49 -0.40 1.46 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 33 H 0.13 2.11 6.03 -51.93 -0.31 1.79 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 314.33 15.07 4.74 4.74 Total: -1.00 -31.26 314.33 -8.26 -39.52 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.90 Total: -2.14 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -2.80 Total: -10.11 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: 0.74 Total: -25.55 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -1.01 Total: -22.80 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.26 -8.26 -39.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327182563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.514 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds