Wall clock time and date at job start Mon Mar 30 2020 01:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99962 * 2 1 4 4 H 1.48510 * 109.47031 * 239.99817 * 3 2 1 5 5 H 1.48500 * 109.47510 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47409 * 119.99951 * 3 2 1 7 7 C 1.37872 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99656 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00365 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47045 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.46980 * 180.02562 * 10 9 7 12 12 C 1.34715 * 117.00094 * 179.97438 * 11 10 9 13 13 O 1.21471 * 119.99800 * 359.97438 * 12 11 10 14 14 C 1.47725 * 120.00295 * 179.72680 * 12 11 10 15 15 C 1.39500 * 120.00292 * 359.71658 * 14 12 11 16 16 C 1.37925 * 119.72684 * 179.80283 * 15 14 12 17 17 C 1.38237 * 120.02522 * 0.57498 * 16 15 14 18 18 C 1.38714 * 120.60137 * 359.78204 * 17 16 15 19 19 C 1.37656 * 119.96964 * 359.75848 * 18 17 16 20 20 C 1.50638 * 121.57651 * 180.63277 * 19 18 17 21 21 O 1.42712 * 110.28890 * 343.78560 * 20 19 18 22 22 C 1.43211 * 113.14307 * 51.66229 * 21 20 19 23 23 C 1.50765 * 118.71132 * 179.51188 * 18 17 16 24 24 H 0.97002 * 119.99939 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47336 * 59.99637 * 9 7 2 26 26 H 1.08999 * 109.46911 * 299.99255 * 9 7 2 27 27 H 1.08997 * 109.47282 * 60.00186 * 10 9 7 28 28 H 1.09002 * 109.47256 * 299.99413 * 10 9 7 29 29 H 1.08001 * 120.14034 * 0.03391 * 15 14 12 30 30 H 1.07995 * 119.99026 * 180.34975 * 16 15 14 31 31 H 1.08000 * 119.69822 * 179.75842 * 17 16 15 32 32 H 1.09000 * 109.32871 * 104.03283 * 20 19 18 33 33 H 1.08998 * 109.33781 * 223.52744 * 20 19 18 34 34 H 1.09001 * 109.63642 * 169.76919 * 22 21 20 35 35 H 1.08997 * 109.80354 * 49.26073 * 22 21 20 36 36 H 1.08999 * 109.42296 * 282.98834 * 23 18 17 37 37 H 1.09002 * 109.41927 * 42.86431 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5192 -4.9195 -0.0001 12 6 2.2529 -6.0493 -0.0007 13 8 3.4659 -5.9858 -0.0012 14 6 1.5822 -7.3656 0.0048 15 6 0.1892 -7.4387 0.0165 16 6 -0.4310 -8.6706 0.0174 17 6 0.3269 -9.8266 0.0188 18 6 1.7126 -9.7625 0.0146 19 6 2.3444 -8.5396 0.0041 20 6 3.8465 -8.4278 -0.0149 21 8 4.4399 -9.6721 0.3542 22 6 3.9402 -10.7805 -0.4026 23 6 2.4972 -11.0498 0.0275 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8904 27 1 2.8718 -3.6043 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 -0.4013 -6.5344 0.0211 30 1 -1.5092 -8.7321 0.0208 31 1 -0.1642 -10.7885 0.0234 32 1 4.1753 -8.1545 -1.0175 33 1 4.1599 -7.6559 0.6880 34 1 4.5510 -11.6621 -0.2079 35 1 3.9673 -10.5437 -1.4661 36 1 2.4911 -11.4680 1.0341 37 1 2.0407 -11.7594 -0.6626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327182563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:28 Heat of formation + Delta-G solvation = -134.971068 kcal Electronic energy + Delta-G solvation = -20643.714394 eV Core-core repulsion = 17349.836084 eV Total energy + Delta-G solvation = -3293.878310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.02299 -40.71468 -38.54190 -37.80319 -35.48429 -34.17137 -32.79271 -32.39716 -30.71049 -27.43376 -26.67630 -25.04812 -24.86598 -22.98233 -21.94271 -21.19063 -19.03347 -18.38808 -17.96771 -17.66037 -17.45442 -17.12177 -16.66452 -16.51957 -16.16585 -15.31397 -15.23886 -14.90353 -14.60185 -14.39768 -14.14533 -13.80829 -13.39862 -13.18721 -13.10147 -12.96778 -12.68318 -12.62005 -12.58766 -12.54307 -11.82274 -11.66247 -11.53175 -11.51348 -11.24671 -10.72583 -10.62799 -10.00392 -9.71870 -8.28860 -6.42411 -0.43310 0.20680 1.39610 1.41090 1.43816 1.50932 1.63226 2.38745 2.59956 2.88131 3.05542 3.46372 3.53933 3.61306 3.85911 4.10859 4.15134 4.18083 4.20566 4.27147 4.32264 4.45181 4.52387 4.64700 4.69361 4.75668 4.82611 4.92996 5.06444 5.16506 5.23472 5.34882 5.39274 5.43064 5.50951 5.70478 5.80596 6.03694 6.07767 6.60627 6.70929 7.27409 8.83642 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.034596 B = 0.003422 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.141218 B = 8181.043211 C = 8939.107084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.553 4.553 8 H 0.065 0.935 9 C 0.032 3.968 10 C 0.091 3.909 11 O -0.358 6.358 12 C 0.495 3.505 13 O -0.532 6.532 14 C -0.141 4.141 15 C -0.071 4.071 16 C -0.124 4.124 17 C -0.069 4.069 18 C -0.098 4.098 19 C -0.074 4.074 20 C 0.100 3.900 21 O -0.395 6.395 22 C 0.041 3.959 23 C -0.107 4.107 24 H 0.269 0.731 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.137 0.863 30 H 0.166 0.834 31 H 0.172 0.828 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 -25.291 -1.148 25.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.591 4.591 8 H 0.083 0.917 9 C -0.005 4.005 10 C 0.018 3.982 11 O -0.274 6.274 12 C 0.343 3.657 13 O -0.424 6.424 14 C -0.143 4.143 15 C -0.090 4.090 16 C -0.142 4.142 17 C -0.086 4.086 18 C -0.098 4.098 19 C -0.075 4.075 20 C 0.024 3.976 21 O -0.314 6.314 22 C -0.034 4.034 23 C -0.143 4.143 24 H 0.077 0.923 25 H 0.026 0.974 26 H 0.025 0.975 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.154 0.846 30 H 0.183 0.817 31 H 0.190 0.810 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.143 0.857 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.977 -25.127 -1.005 25.167 hybrid contribution 0.204 1.605 -0.187 1.629 sum 1.181 -23.522 -1.192 23.582 Atomic orbital electron populations 1.70085 1.07812 1.28404 1.50222 1.25962 0.95858 1.03408 0.93975 0.85369 0.78200 0.77374 0.79327 1.19041 1.20368 1.19060 1.21342 0.93728 0.91215 1.52780 0.91682 1.18971 0.94296 0.90471 0.96741 1.23226 0.95174 0.78675 1.01125 1.86551 1.42075 1.15585 1.83189 1.21807 0.85622 0.85960 0.72324 1.90714 1.15816 1.88233 1.47666 1.19049 0.95018 0.88467 1.11718 1.21660 0.92224 1.00512 0.94569 1.21531 1.02181 0.90845 0.99627 1.21816 0.92121 1.00470 0.94236 1.19845 0.95116 0.93911 1.00899 1.20396 0.96827 0.92384 0.97871 1.21667 0.87703 0.86424 1.01772 1.88099 1.64424 1.16186 1.62681 1.22982 0.95038 0.89971 0.95457 1.21206 0.94699 0.93546 1.04882 0.92268 0.97434 0.97459 0.92085 0.92038 0.84555 0.81655 0.81015 0.91818 0.87562 0.85712 0.92372 0.88445 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 8 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.03 1.77 5.35 29.85 0.16 1.93 16 10 C 0.09 4.23 5.41 71.98 0.39 4.62 16 11 O -0.36 -15.17 9.46 -56.24 -0.53 -15.71 16 12 C 0.50 19.00 7.86 70.33 0.55 19.55 16 13 O -0.53 -21.86 12.95 19.93 0.26 -21.60 16 14 C -0.14 -4.36 5.88 -20.05 -0.12 -4.48 16 15 C -0.07 -1.83 9.61 22.50 0.22 -1.61 16 16 C -0.12 -2.15 10.03 22.20 0.22 -1.93 16 17 C -0.07 -1.00 9.66 22.38 0.22 -0.79 16 18 C -0.10 -1.88 5.77 -19.87 -0.11 -2.00 16 19 C -0.07 -2.01 5.84 -19.60 -0.11 -2.13 16 20 C 0.10 2.92 5.20 71.22 0.37 3.29 16 21 O -0.39 -10.11 10.80 -148.98 -1.61 -11.72 16 22 C 0.04 0.65 6.85 71.97 0.49 1.15 16 23 C -0.11 -1.34 6.00 29.85 0.18 -1.16 16 24 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 25 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.14 3.62 7.60 -2.91 -0.02 3.60 16 30 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 32 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 33 H 0.11 3.62 6.03 -2.39 -0.01 3.61 16 34 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 0.88 8.08 -2.39 -0.02 0.86 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -70.52 314.33 4.65 -65.87 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.07 Total: 6.90 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 3.15 Total: -14.21 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.28 Total: -55.48 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: -1.88 Total: -49.02 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -70.52 4.65 -65.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327182563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.097 kcal (2) G-P(sol) polarization free energy of solvation -70.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds