Wall clock time and date at job start Mon Mar 30 2020 02:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21255 * 120.00380 * 2 1 4 4 C 1.47173 * 119.99956 * 179.97438 * 2 1 3 5 5 C 1.39858 * 120.17046 * 180.02562 * 4 2 1 6 6 C 1.37881 * 119.81887 * 180.02562 * 5 4 2 7 7 C 1.38405 * 120.17702 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.82447 * 179.97438 * 7 6 5 9 9 O 1.45204 * 109.47016 * 90.00130 * 8 7 6 10 10 C 1.34231 * 116.99927 * 179.97438 * 9 8 7 11 11 O 1.20825 * 120.00060 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00011 * 180.02562 * 10 9 8 13 13 H 1.08998 * 109.46932 * 300.00289 * 12 10 9 14 14 C 1.53006 * 109.47254 * 59.99808 * 12 10 9 15 15 C 1.50700 * 109.47491 * 180.02562 * 12 10 9 16 16 H 1.07999 * 119.99256 * 356.68574 * 15 12 10 17 17 C 1.37868 * 120.00303 * 176.68938 * 15 12 10 18 18 N 1.31520 * 120.00090 * 352.44338 * 17 15 12 19 19 Si 1.86805 * 120.00195 * 172.71443 * 17 15 12 20 20 H 1.48503 * 109.47054 * 264.79579 * 19 17 15 21 21 H 1.48500 * 109.46575 * 24.79344 * 19 17 15 22 22 H 1.48491 * 109.47049 * 144.79629 * 19 17 15 23 23 C 1.38400 * 120.34505 * 0.23606 * 7 6 5 24 24 C 1.37883 * 120.17521 * 359.48374 * 23 7 6 25 25 H 1.08998 * 109.47070 * 270.00439 * 1 2 3 26 26 H 1.09000 * 109.47291 * 30.00100 * 1 2 3 27 27 H 1.08997 * 109.47047 * 150.00124 * 1 2 3 28 28 H 1.07998 * 120.08867 * 359.97438 * 5 4 2 29 29 H 1.08000 * 119.91032 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47640 * 330.00344 * 8 7 6 31 31 H 1.08998 * 109.47231 * 209.99823 * 8 7 6 32 32 H 1.09001 * 109.47192 * 297.78731 * 14 12 10 33 33 H 1.08997 * 109.46811 * 57.78790 * 14 12 10 34 34 H 1.09003 * 109.47025 * 177.78348 * 14 12 10 35 35 H 0.96998 * 120.00239 * 180.27341 * 18 17 15 36 36 H 1.08005 * 119.90879 * 179.72511 * 23 7 6 37 37 H 1.07999 * 120.08975 * 180.23418 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2428 -1.2746 0.0006 5 6 3.6413 -1.2787 0.0011 6 6 4.3234 -2.4770 0.0011 7 6 3.6277 -3.6735 0.0000 8 6 4.3812 -4.9786 -0.0005 9 8 4.6227 -5.3987 1.3683 10 6 5.2875 -6.5515 1.5436 11 8 5.6559 -7.1883 0.5852 12 6 5.5744 -7.0516 2.9360 13 1 6.1770 -6.3163 3.4691 14 6 4.2561 -7.2680 3.6819 15 6 6.3270 -8.3548 2.8566 16 1 6.5261 -8.8056 1.8956 17 6 6.7612 -8.9715 4.0107 18 7 6.6518 -8.3547 5.1671 19 14 7.5119 -10.6802 3.9310 20 1 6.4640 -11.6948 4.2102 21 1 8.0755 -10.9105 2.5766 22 1 8.5927 -10.7937 4.9429 23 6 2.2437 -3.6776 -0.0060 24 6 1.5471 -2.4878 -0.0002 25 1 -0.3633 0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 4.1856 -0.3459 0.0007 29 1 5.4034 -2.4820 0.0011 30 1 5.3339 -4.8480 -0.5139 31 1 3.7924 -5.7379 -0.5151 32 1 3.7304 -6.3175 3.7738 33 1 3.6370 -7.9736 3.1282 34 1 4.4620 -7.6669 4.6752 35 1 6.9609 -8.7870 5.9786 36 1 1.7080 -4.6154 -0.0113 37 1 0.4671 -2.4926 -0.0011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327998041.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:39 Heat of formation + Delta-G solvation = -110.057852 kcal Electronic energy + Delta-G solvation = -20136.365344 eV Core-core repulsion = 16843.567352 eV Total energy + Delta-G solvation = -3292.797992 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.31499 -39.61851 -38.42413 -35.81107 -33.89459 -32.76497 -31.44222 -30.70537 -29.96487 -26.82465 -25.21387 -23.41827 -22.81193 -22.23647 -20.01556 -19.86044 -17.37283 -16.77202 -16.26424 -16.17721 -15.90196 -15.33286 -15.26382 -15.10677 -14.49932 -14.26178 -13.89108 -13.78149 -13.05524 -12.90408 -12.61604 -12.54659 -12.37995 -12.26572 -11.73120 -11.50606 -11.26309 -11.06136 -10.90400 -10.70565 -10.42181 -10.14100 -10.08974 -10.03521 -9.36212 -9.19974 -9.10884 -8.91735 -8.47829 -6.15526 -4.18074 0.34738 1.17963 2.09341 3.23987 3.28246 3.29335 3.35063 3.42444 3.75954 3.85028 4.39518 4.49345 4.63122 4.71175 4.76850 4.97301 5.05867 5.12193 5.19677 5.21270 5.41886 5.45877 5.56464 5.65493 5.80750 6.01959 6.07219 6.15505 6.35945 6.58376 6.64050 6.78736 6.79435 7.13329 7.22965 7.38344 7.62990 7.87331 8.07948 8.78704 8.90938 9.46770 10.94226 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041000 B = 0.003040 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.757616 B = 9208.242675 C = 9354.129470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.397 3.603 3 O -0.461 6.461 4 C -0.174 4.174 5 C -0.063 4.063 6 C -0.110 4.110 7 C -0.050 4.050 8 C 0.095 3.905 9 O -0.359 6.359 10 C 0.465 3.535 11 O -0.516 6.516 12 C 0.057 3.943 13 H 0.069 0.931 14 C -0.129 4.129 15 C -0.515 4.515 16 H 0.076 0.924 17 C 0.063 3.937 18 N -0.891 5.891 19 Si 0.902 3.098 20 H -0.279 1.279 21 H -0.271 1.271 22 H -0.286 1.286 23 C -0.111 4.111 24 C -0.075 4.075 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.027 0.973 33 H 0.032 0.968 34 H 0.083 0.917 35 H 0.264 0.736 36 H 0.133 0.867 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.133 12.938 -9.153 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.275 3.725 3 O -0.337 6.337 4 C -0.175 4.175 5 C -0.081 4.081 6 C -0.128 4.128 7 C -0.050 4.050 8 C 0.021 3.979 9 O -0.278 6.278 10 C 0.310 3.690 11 O -0.402 6.402 12 C 0.038 3.962 13 H 0.087 0.913 14 C -0.186 4.186 15 C -0.553 4.553 16 H 0.094 0.906 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.196 1.196 22 H -0.211 1.211 23 C -0.129 4.129 24 C -0.094 4.094 25 H 0.117 0.883 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.151 0.849 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.671 13.284 -9.283 19.971 hybrid contribution 0.400 -1.067 -0.086 1.143 sum -11.271 12.217 -9.369 19.080 Atomic orbital electron populations 1.22241 0.93737 1.04900 1.04920 1.22526 0.91700 0.87584 0.70671 1.90536 1.72190 1.34380 1.36639 1.20544 0.94687 0.94758 1.07474 1.21400 0.93139 0.98594 0.94975 1.21133 1.00690 0.91387 0.99547 1.19960 0.93887 0.94257 0.96912 1.21693 0.99749 0.92669 0.83779 1.86712 1.70652 1.41606 1.28839 1.25411 0.72230 0.76316 0.95033 1.90505 1.49414 1.56645 1.43671 1.18775 0.96244 0.97932 0.83214 0.91342 1.21668 0.95605 0.98549 1.02824 1.21116 1.35518 1.04561 0.94106 0.90599 1.24937 0.95461 0.98297 0.95164 1.69950 1.47145 1.37329 0.98433 0.86402 0.78764 0.83854 0.78030 1.20525 1.19606 1.21143 1.21106 0.93468 0.98598 0.99692 1.21435 1.00084 0.91241 0.96595 0.88302 0.89444 0.89423 0.84750 0.84938 0.90590 0.90582 0.95403 0.94844 0.89800 0.92660 0.84927 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.19 9.75 36.00 0.35 -0.83 16 2 C 0.40 3.95 7.23 -30.69 -0.22 3.73 16 3 O -0.46 -6.14 17.09 5.58 0.10 -6.04 16 4 C -0.17 -1.82 5.87 -105.06 -0.62 -2.44 16 5 C -0.06 -0.72 9.60 -39.11 -0.38 -1.09 16 6 C -0.11 -1.31 9.68 -39.65 -0.38 -1.69 16 7 C -0.05 -0.64 5.53 -104.50 -0.58 -1.21 16 8 C 0.10 1.44 5.58 36.00 0.20 1.64 16 9 O -0.36 -6.94 10.13 -39.26 -0.40 -7.34 16 10 C 0.47 10.67 7.25 36.00 0.26 10.93 16 11 O -0.52 -12.81 15.21 -18.75 -0.29 -13.09 16 12 C 0.06 1.43 2.63 -92.92 -0.24 1.19 16 13 H 0.07 1.80 8.14 -51.93 -0.42 1.37 16 14 C -0.13 -2.95 8.96 37.16 0.33 -2.62 16 15 C -0.52 -14.29 8.32 -34.44 -0.29 -14.58 16 16 H 0.08 2.20 6.77 -52.49 -0.36 1.84 16 17 C 0.06 1.73 5.21 -17.82 -0.09 1.64 16 18 N -0.89 -24.73 11.92 55.43 0.66 -24.07 16 19 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.11 -1.19 9.67 -39.65 -0.38 -1.58 16 24 C -0.08 -0.69 9.37 -39.11 -0.37 -1.05 16 25 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.35 6.47 -51.93 -0.34 0.01 16 28 H 0.13 1.45 7.65 -52.49 -0.40 1.04 16 29 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.08 1.11 8.08 -51.93 -0.42 0.70 16 31 H 0.08 1.09 8.07 -51.93 -0.42 0.68 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 2.07 6.59 -51.93 -0.34 1.73 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.13 0.78 6.36 -52.49 -0.33 0.44 16 LS Contribution 324.98 15.07 4.90 4.90 Total: -1.00 -31.73 324.98 -7.16 -38.89 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.70 Total: -1.51 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -2.40 Total: -7.96 kcal Atomic # 7 Polarization: -24.73 SS G_CDS: 0.66 Total: -24.07 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.59 Total: -26.47 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.73 -7.16 -38.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327998041.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.173 kcal (2) G-P(sol) polarization free energy of solvation -31.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds