Wall clock time and date at job start Mon Mar 30 2020 02:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21255 * 120.00380 * 2 1 4 4 C 1.47173 * 119.99956 * 179.97438 * 2 1 3 5 5 C 1.39858 * 120.17046 * 180.02562 * 4 2 1 6 6 C 1.37881 * 119.81887 * 180.02562 * 5 4 2 7 7 C 1.38405 * 120.17702 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.82447 * 179.97438 * 7 6 5 9 9 O 1.45204 * 109.47016 * 90.00130 * 8 7 6 10 10 C 1.34231 * 116.99927 * 179.97438 * 9 8 7 11 11 O 1.20825 * 120.00060 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00011 * 180.02562 * 10 9 8 13 13 H 1.08998 * 109.46932 * 300.00289 * 12 10 9 14 14 C 1.53006 * 109.47254 * 59.99808 * 12 10 9 15 15 C 1.50700 * 109.47491 * 180.02562 * 12 10 9 16 16 H 1.07999 * 119.99256 * 356.68574 * 15 12 10 17 17 C 1.37868 * 120.00303 * 176.68938 * 15 12 10 18 18 N 1.31520 * 120.00090 * 352.44338 * 17 15 12 19 19 Si 1.86805 * 120.00195 * 172.71443 * 17 15 12 20 20 H 1.48503 * 109.47054 * 264.79579 * 19 17 15 21 21 H 1.48500 * 109.46575 * 24.79344 * 19 17 15 22 22 H 1.48491 * 109.47049 * 144.79629 * 19 17 15 23 23 C 1.38400 * 120.34505 * 0.23606 * 7 6 5 24 24 C 1.37883 * 120.17521 * 359.48374 * 23 7 6 25 25 H 1.08998 * 109.47070 * 270.00439 * 1 2 3 26 26 H 1.09000 * 109.47291 * 30.00100 * 1 2 3 27 27 H 1.08997 * 109.47047 * 150.00124 * 1 2 3 28 28 H 1.07998 * 120.08867 * 359.97438 * 5 4 2 29 29 H 1.08000 * 119.91032 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47640 * 330.00344 * 8 7 6 31 31 H 1.08998 * 109.47231 * 209.99823 * 8 7 6 32 32 H 1.09001 * 109.47192 * 297.78731 * 14 12 10 33 33 H 1.08997 * 109.46811 * 57.78790 * 14 12 10 34 34 H 1.09003 * 109.47025 * 177.78348 * 14 12 10 35 35 H 0.96998 * 120.00239 * 180.27341 * 18 17 15 36 36 H 1.08005 * 119.90879 * 179.72511 * 23 7 6 37 37 H 1.07999 * 120.08975 * 180.23418 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2428 -1.2746 0.0006 5 6 3.6413 -1.2787 0.0011 6 6 4.3234 -2.4770 0.0011 7 6 3.6277 -3.6735 0.0000 8 6 4.3812 -4.9786 -0.0005 9 8 4.6227 -5.3987 1.3683 10 6 5.2875 -6.5515 1.5436 11 8 5.6559 -7.1883 0.5852 12 6 5.5744 -7.0516 2.9360 13 1 6.1770 -6.3163 3.4691 14 6 4.2561 -7.2680 3.6819 15 6 6.3270 -8.3548 2.8566 16 1 6.5261 -8.8056 1.8956 17 6 6.7612 -8.9715 4.0107 18 7 6.6518 -8.3547 5.1671 19 14 7.5119 -10.6802 3.9310 20 1 6.4640 -11.6948 4.2102 21 1 8.0755 -10.9105 2.5766 22 1 8.5927 -10.7937 4.9429 23 6 2.2437 -3.6776 -0.0060 24 6 1.5471 -2.4878 -0.0002 25 1 -0.3633 0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 4.1856 -0.3459 0.0007 29 1 5.4034 -2.4820 0.0011 30 1 5.3339 -4.8480 -0.5139 31 1 3.7924 -5.7379 -0.5151 32 1 3.7304 -6.3175 3.7738 33 1 3.6370 -7.9736 3.1282 34 1 4.4620 -7.6669 4.6752 35 1 6.9609 -8.7870 5.9786 36 1 1.7080 -4.6154 -0.0113 37 1 0.4671 -2.4926 -0.0011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327998041.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:39 Heat of formation + Delta-G solvation = -126.984853 kcal Electronic energy + Delta-G solvation = -20137.099353 eV Core-core repulsion = 16843.567352 eV Total energy + Delta-G solvation = -3293.532002 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.49372 -40.95015 -39.38189 -37.43626 -35.89721 -33.74394 -32.69517 -32.22930 -30.69489 -27.89483 -27.24603 -25.04039 -23.67726 -23.33434 -21.63783 -20.81681 -18.68200 -18.22551 -18.01781 -17.56322 -17.35574 -16.53283 -16.46147 -16.01405 -15.85773 -15.28118 -15.10498 -14.74791 -14.59470 -14.31417 -13.94261 -13.60364 -13.47243 -13.05656 -12.99690 -12.96820 -12.85543 -12.59175 -12.57146 -12.33500 -12.11608 -12.06028 -11.63353 -11.14828 -11.06402 -10.82080 -10.55214 -10.03007 -9.98192 -8.23418 -6.33309 -0.52583 0.34617 1.23570 1.40850 1.43212 1.43639 1.54893 2.00708 2.43771 2.81931 3.05594 3.09192 3.56539 3.67316 3.91920 4.01207 4.15053 4.20200 4.34688 4.45309 4.48555 4.59039 4.67796 4.68827 4.80381 4.86988 4.97743 4.99407 5.09114 5.20802 5.34693 5.37984 5.45193 5.46008 5.67421 5.80269 5.80972 6.06730 6.49139 6.73582 7.02581 7.34959 8.85893 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041000 B = 0.003040 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.757616 B = 9208.242675 C = 9354.129470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.397 3.603 3 O -0.504 6.504 4 C -0.180 4.180 5 C -0.077 4.077 6 C -0.118 4.118 7 C -0.069 4.069 8 C 0.093 3.907 9 O -0.357 6.357 10 C 0.475 3.525 11 O -0.540 6.540 12 C 0.049 3.951 13 H 0.050 0.950 14 C -0.115 4.115 15 C -0.539 4.539 16 H 0.057 0.943 17 C 0.024 3.976 18 N -0.911 5.911 19 Si 0.961 3.039 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.277 1.277 23 C -0.113 4.113 24 C -0.060 4.060 25 H 0.116 0.884 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.063 0.937 35 H 0.268 0.732 36 H 0.150 0.850 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.329 12.908 -9.433 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.278 3.722 3 O -0.383 6.383 4 C -0.181 4.181 5 C -0.095 4.095 6 C -0.136 4.136 7 C -0.069 4.069 8 C 0.020 3.980 9 O -0.275 6.275 10 C 0.320 3.680 11 O -0.430 6.430 12 C 0.030 3.970 13 H 0.068 0.932 14 C -0.173 4.173 15 C -0.577 4.577 16 H 0.075 0.925 17 C -0.176 4.176 18 N -0.549 5.549 19 Si 0.786 3.214 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.131 4.131 24 C -0.077 4.077 25 H 0.134 0.866 26 H 0.110 0.890 27 H 0.133 0.867 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.168 0.832 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -13.889 13.270 -9.560 21.456 hybrid contribution 1.036 -0.936 -0.043 1.397 sum -12.853 12.334 -9.602 20.237 Atomic orbital electron populations 1.22293 0.89995 1.06514 1.06401 1.23131 0.93629 0.86491 0.68913 1.90532 1.73397 1.35585 1.38778 1.20859 0.94425 0.96015 1.06784 1.21496 0.94148 0.98256 0.95640 1.21188 1.00977 0.91554 0.99926 1.19866 0.94859 0.92909 0.99301 1.21970 1.00461 0.94244 0.81352 1.86642 1.69442 1.39612 1.31774 1.24819 0.72244 0.77032 0.93883 1.90485 1.50606 1.57732 1.44160 1.18684 0.96836 0.96630 0.84857 0.93204 1.21497 0.94754 0.99797 1.01278 1.21246 1.36819 1.06032 0.93602 0.92458 1.25635 0.95692 1.01556 0.94748 1.70025 1.47406 1.38565 0.98879 0.85492 0.78341 0.79754 0.77797 1.19449 1.20059 1.20198 1.21385 0.92641 1.00149 0.98897 1.21816 1.02015 0.89654 0.94237 0.86580 0.88962 0.86745 0.85012 0.84877 0.90655 0.89651 0.92944 0.94410 0.91769 0.92256 0.83208 0.80529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.58 9.75 71.23 0.69 -0.88 16 2 C 0.40 7.13 7.23 28.03 0.20 7.33 16 3 O -0.50 -13.16 17.09 -2.95 -0.05 -13.21 16 4 C -0.18 -3.41 5.87 -20.15 -0.12 -3.53 16 5 C -0.08 -1.73 9.60 22.58 0.22 -1.52 16 6 C -0.12 -2.80 9.68 22.23 0.22 -2.59 16 7 C -0.07 -1.68 5.53 -19.79 -0.11 -1.79 16 8 C 0.09 2.77 5.58 71.24 0.40 3.16 16 9 O -0.36 -13.65 10.13 -51.43 -0.52 -14.17 16 10 C 0.47 21.94 7.25 71.23 0.52 22.46 16 11 O -0.54 -27.19 15.21 21.97 0.33 -26.86 16 12 C 0.05 2.49 2.63 -12.29 -0.03 2.46 16 13 H 0.05 2.69 8.14 -2.39 -0.02 2.67 16 14 C -0.12 -5.26 8.96 71.98 0.65 -4.61 16 15 C -0.54 -30.40 8.32 25.60 0.21 -30.19 16 16 H 0.06 3.39 6.77 -2.91 -0.02 3.37 16 17 C 0.02 1.31 5.21 84.65 0.44 1.75 16 18 N -0.91 -50.70 11.92 21.44 0.26 -50.44 16 19 Si 0.96 43.51 29.54 68.60 2.03 45.53 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 C -0.11 -2.13 9.67 22.22 0.22 -1.92 16 24 C -0.06 -0.87 9.37 22.58 0.21 -0.66 16 25 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.11 0.31 6.47 -2.39 -0.02 0.30 16 28 H 0.13 2.93 7.65 -2.91 -0.02 2.91 16 29 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 30 H 0.08 2.23 8.08 -2.38 -0.02 2.21 16 31 H 0.09 2.37 8.07 -2.39 -0.02 2.35 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 3.17 6.59 -2.39 -0.02 3.15 16 35 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 36 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.18 1.05 6.36 -2.91 -0.02 1.03 16 Total: -1.00 -69.25 324.98 6.83 -62.43 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.08 Total: 7.26 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 3.71 Total: -10.53 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.26 Total: -50.44 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: -0.24 Total: -54.25 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -69.25 6.83 -62.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327998041.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.560 kcal (2) G-P(sol) polarization free energy of solvation -69.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds