Wall clock time and date at job start Mon Mar 30 2020 02:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21261 * 119.99496 * 2 1 4 4 C 1.47163 * 120.00255 * 179.97438 * 2 1 3 5 5 C 1.39852 * 120.17085 * 179.97438 * 4 2 1 6 6 C 1.37892 * 119.82537 * 180.02562 * 5 4 2 7 7 C 1.38402 * 120.16762 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.82258 * 179.97438 * 7 6 5 9 9 O 1.45202 * 109.46995 * 89.99708 * 8 7 6 10 10 C 1.34228 * 117.00107 * 179.97438 * 9 8 7 11 11 O 1.20822 * 119.99844 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00316 * 180.02562 * 10 9 8 13 13 H 1.09007 * 109.46871 * 59.99983 * 12 10 9 14 14 C 1.53000 * 109.47177 * 300.00594 * 12 10 9 15 15 C 1.50694 * 109.47166 * 180.02562 * 12 10 9 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 12 10 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.38403 * 120.35270 * 0.23038 * 7 6 5 24 24 C 1.37889 * 120.17201 * 359.49094 * 23 7 6 25 25 H 1.08997 * 109.46689 * 239.99873 * 1 2 3 26 26 H 1.08994 * 109.47244 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46893 * 120.00403 * 1 2 3 28 28 H 1.08005 * 120.08977 * 0.02562 * 5 4 2 29 29 H 1.07997 * 119.91561 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.46984 * 330.00099 * 8 7 6 31 31 H 1.08998 * 109.47262 * 209.99527 * 8 7 6 32 32 H 1.08998 * 109.47089 * 59.99668 * 14 12 10 33 33 H 1.08995 * 109.47131 * 179.97438 * 14 12 10 34 34 H 1.09002 * 109.47106 * 299.99721 * 14 12 10 35 35 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 36 36 H 1.07999 * 119.91272 * 179.72543 * 23 7 6 37 37 H 1.07998 * 120.09001 * 180.23092 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2429 -1.2744 0.0006 5 6 3.6414 -1.2785 0.0000 6 6 4.3237 -2.4768 0.0000 7 6 3.6281 -3.6733 0.0000 8 6 4.3817 -4.9784 -0.0005 9 8 4.6242 -5.3978 1.3683 10 6 5.2892 -6.5505 1.5437 11 8 5.6569 -7.1877 0.5852 12 6 5.5773 -7.0499 2.9360 13 1 4.6386 -7.2039 3.4683 14 6 6.4238 -6.0174 3.6832 15 6 6.3299 -8.3531 2.8565 16 1 6.5755 -8.7772 1.8941 17 6 6.7050 -9.0042 4.0127 18 7 6.4064 -8.4876 5.1847 19 14 7.6372 -10.6199 3.9141 20 1 6.6716 -11.7478 3.8876 21 1 8.4591 -10.6426 2.6775 22 1 8.5222 -10.7538 5.0991 23 6 2.2441 -3.6776 -0.0048 24 6 1.5473 -2.4877 0.0010 25 1 -0.3632 -0.5138 0.8900 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 4.1857 -0.3456 -0.0004 29 1 5.4037 -2.4817 0.0000 30 1 5.3339 -4.8479 -0.5147 31 1 3.7924 -5.7380 -0.5142 32 1 5.8798 -5.0747 3.7407 33 1 6.6318 -6.3785 4.6904 34 1 7.3625 -5.8634 3.1510 35 1 6.6700 -8.9459 5.9980 36 1 1.7084 -4.6154 -0.0092 37 1 0.4673 -2.4926 0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327998042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:41 Heat of formation + Delta-G solvation = -110.256563 kcal Electronic energy + Delta-G solvation = -20140.720983 eV Core-core repulsion = 16847.914374 eV Total energy + Delta-G solvation = -3292.806609 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30744 -39.61606 -38.42321 -35.80983 -33.91920 -32.74483 -31.42848 -30.64738 -29.97138 -26.81907 -25.23003 -23.38561 -22.79437 -22.22390 -20.02375 -19.85023 -17.33919 -16.76320 -16.26956 -16.18218 -15.89326 -15.36900 -15.26448 -15.04120 -14.48794 -14.30511 -13.88830 -13.73472 -13.04217 -12.91094 -12.68675 -12.54426 -12.38523 -12.23937 -11.70273 -11.44590 -11.27094 -11.06756 -10.82173 -10.73841 -10.36755 -10.13895 -10.08942 -10.04133 -9.36769 -9.19784 -9.07742 -8.93602 -8.47449 -6.13239 -4.18980 0.35094 1.18073 2.09322 3.24084 3.28551 3.29635 3.34632 3.42096 3.76286 3.85119 4.39126 4.49771 4.65273 4.72565 4.77622 4.95826 5.05060 5.13059 5.19735 5.20862 5.42322 5.45656 5.56355 5.66522 5.80712 6.01955 6.08698 6.16005 6.36102 6.63627 6.64228 6.83899 6.85082 7.14476 7.23023 7.40288 7.71458 7.91490 8.10866 8.78699 8.90213 9.46766 10.94131 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041061 B = 0.003040 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.748777 B = 9209.079947 C = 9360.965137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.396 3.604 3 O -0.461 6.461 4 C -0.174 4.174 5 C -0.063 4.063 6 C -0.109 4.109 7 C -0.050 4.050 8 C 0.095 3.905 9 O -0.359 6.359 10 C 0.465 3.535 11 O -0.516 6.516 12 C 0.059 3.941 13 H 0.065 0.935 14 C -0.134 4.134 15 C -0.514 4.514 16 H 0.076 0.924 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.905 3.095 20 H -0.279 1.279 21 H -0.272 1.272 22 H -0.285 1.285 23 C -0.111 4.111 24 C -0.075 4.075 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.023 0.977 33 H 0.096 0.904 34 H 0.031 0.969 35 H 0.264 0.736 36 H 0.133 0.867 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.099 13.398 -9.175 19.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.275 3.725 3 O -0.337 6.337 4 C -0.175 4.175 5 C -0.081 4.081 6 C -0.127 4.127 7 C -0.050 4.050 8 C 0.021 3.979 9 O -0.278 6.278 10 C 0.310 3.690 11 O -0.403 6.403 12 C 0.040 3.960 13 H 0.082 0.918 14 C -0.192 4.192 15 C -0.552 4.552 16 H 0.094 0.906 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.732 3.268 20 H -0.205 1.205 21 H -0.197 1.197 22 H -0.211 1.211 23 C -0.129 4.129 24 C -0.093 4.093 25 H 0.114 0.886 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.042 0.958 33 H 0.115 0.885 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.151 0.849 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.653 13.735 -9.301 19.714 hybrid contribution 0.456 -1.032 -0.134 1.136 sum -10.197 12.703 -9.434 18.824 Atomic orbital electron populations 1.22254 0.93686 1.05130 1.04668 1.22538 0.91717 0.87569 0.70715 1.90539 1.72261 1.34344 1.36528 1.20533 0.94685 0.94744 1.07517 1.21402 0.93144 0.98590 0.94983 1.21132 1.00679 0.91386 0.99545 1.19961 0.93883 0.94259 0.96917 1.21694 0.99733 0.92680 0.83784 1.86709 1.70565 1.41690 1.28829 1.25432 0.72254 0.76267 0.95054 1.90502 1.49481 1.56622 1.43688 1.18774 0.98715 0.95391 0.83153 0.91784 1.21737 0.97890 0.95501 1.04032 1.21134 1.36092 1.04006 0.93931 0.90626 1.24942 0.95847 0.98135 0.95060 1.69881 1.46758 1.39033 0.97352 0.86372 0.79683 0.83037 0.77670 1.20509 1.19675 1.21106 1.21107 0.93464 0.98606 0.99714 1.21399 1.00056 0.91225 0.96588 0.88648 0.89744 0.88783 0.84759 0.84953 0.90611 0.90575 0.95756 0.88530 0.94967 0.92656 0.84923 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.18 8.93 36.01 0.32 -0.86 16 2 C 0.40 3.94 7.23 -30.68 -0.22 3.72 16 3 O -0.46 -6.14 17.08 5.57 0.10 -6.05 16 4 C -0.17 -1.82 5.87 -105.07 -0.62 -2.44 16 5 C -0.06 -0.72 9.60 -39.10 -0.38 -1.09 16 6 C -0.11 -1.31 9.68 -39.65 -0.38 -1.69 16 7 C -0.05 -0.64 5.53 -104.50 -0.58 -1.22 16 8 C 0.10 1.45 5.58 36.01 0.20 1.65 16 9 O -0.36 -6.96 10.11 -39.25 -0.40 -7.36 16 10 C 0.47 10.70 7.25 36.00 0.26 10.96 16 11 O -0.52 -12.84 15.21 -18.75 -0.29 -13.13 16 12 C 0.06 1.47 2.74 -92.93 -0.25 1.22 16 13 H 0.06 1.66 8.14 -51.92 -0.42 1.24 16 14 C -0.13 -3.15 8.90 37.16 0.33 -2.81 16 15 C -0.51 -14.27 8.37 -34.44 -0.29 -14.56 16 16 H 0.08 2.19 6.76 -52.49 -0.35 1.83 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 19 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 23 C -0.11 -1.20 9.67 -39.65 -0.38 -1.58 16 24 C -0.07 -0.68 9.47 -39.11 -0.37 -1.05 16 25 H 0.10 0.42 8.09 -51.93 -0.42 0.00 16 26 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 27 H 0.09 0.38 8.09 -51.93 -0.42 -0.04 16 28 H 0.13 1.45 7.65 -52.48 -0.40 1.05 16 29 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 30 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 31 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 32 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 33 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.13 0.77 7.05 -52.49 -0.37 0.40 16 LS Contribution 325.50 15.07 4.91 4.91 Total: -1.00 -31.64 325.50 -7.32 -38.96 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -4.79 Total: -1.42 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -2.45 Total: -8.16 kcal Atomic # 7 Polarization: -24.63 SS G_CDS: 0.63 Total: -24.00 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.59 Total: -26.53 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.64 -7.32 -38.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327998042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.300 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds