Wall clock time and date at job start Mon Mar 30 2020 02:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21261 * 119.99496 * 2 1 4 4 C 1.47163 * 120.00255 * 179.97438 * 2 1 3 5 5 C 1.39852 * 120.17085 * 179.97438 * 4 2 1 6 6 C 1.37892 * 119.82537 * 180.02562 * 5 4 2 7 7 C 1.38402 * 120.16762 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.82258 * 179.97438 * 7 6 5 9 9 O 1.45202 * 109.46995 * 89.99708 * 8 7 6 10 10 C 1.34228 * 117.00107 * 179.97438 * 9 8 7 11 11 O 1.20822 * 119.99844 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00316 * 180.02562 * 10 9 8 13 13 H 1.09007 * 109.46871 * 59.99983 * 12 10 9 14 14 C 1.53000 * 109.47177 * 300.00594 * 12 10 9 15 15 C 1.50694 * 109.47166 * 180.02562 * 12 10 9 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 12 10 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.38403 * 120.35270 * 0.23038 * 7 6 5 24 24 C 1.37889 * 120.17201 * 359.49094 * 23 7 6 25 25 H 1.08997 * 109.46689 * 239.99873 * 1 2 3 26 26 H 1.08994 * 109.47244 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46893 * 120.00403 * 1 2 3 28 28 H 1.08005 * 120.08977 * 0.02562 * 5 4 2 29 29 H 1.07997 * 119.91561 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.46984 * 330.00099 * 8 7 6 31 31 H 1.08998 * 109.47262 * 209.99527 * 8 7 6 32 32 H 1.08998 * 109.47089 * 59.99668 * 14 12 10 33 33 H 1.08995 * 109.47131 * 179.97438 * 14 12 10 34 34 H 1.09002 * 109.47106 * 299.99721 * 14 12 10 35 35 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 36 36 H 1.07999 * 119.91272 * 179.72543 * 23 7 6 37 37 H 1.07998 * 120.09001 * 180.23092 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2429 -1.2744 0.0006 5 6 3.6414 -1.2785 0.0000 6 6 4.3237 -2.4768 0.0000 7 6 3.6281 -3.6733 0.0000 8 6 4.3817 -4.9784 -0.0005 9 8 4.6242 -5.3978 1.3683 10 6 5.2892 -6.5505 1.5437 11 8 5.6569 -7.1877 0.5852 12 6 5.5773 -7.0499 2.9360 13 1 4.6386 -7.2039 3.4683 14 6 6.4238 -6.0174 3.6832 15 6 6.3299 -8.3531 2.8565 16 1 6.5755 -8.7772 1.8941 17 6 6.7050 -9.0042 4.0127 18 7 6.4064 -8.4876 5.1847 19 14 7.6372 -10.6199 3.9141 20 1 6.6716 -11.7478 3.8876 21 1 8.4591 -10.6426 2.6775 22 1 8.5222 -10.7538 5.0991 23 6 2.2441 -3.6776 -0.0048 24 6 1.5473 -2.4877 0.0010 25 1 -0.3632 -0.5138 0.8900 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 4.1857 -0.3456 -0.0004 29 1 5.4037 -2.4817 0.0000 30 1 5.3339 -4.8479 -0.5147 31 1 3.7924 -5.7380 -0.5142 32 1 5.8798 -5.0747 3.7407 33 1 6.6318 -6.3785 4.6904 34 1 7.3625 -5.8634 3.1510 35 1 6.6700 -8.9459 5.9980 36 1 1.7084 -4.6154 -0.0092 37 1 0.4673 -2.4926 0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327998042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:41 Heat of formation + Delta-G solvation = -126.978396 kcal Electronic energy + Delta-G solvation = -20141.446096 eV Core-core repulsion = 16847.914374 eV Total energy + Delta-G solvation = -3293.531722 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.49427 -40.94394 -39.38118 -37.43942 -35.92952 -33.72610 -32.64322 -32.21101 -30.70491 -27.89258 -27.27754 -25.01259 -23.65801 -23.33553 -21.63406 -20.82378 -18.67642 -18.19748 -18.02088 -17.58210 -17.34417 -16.53144 -16.48578 -16.01182 -15.80813 -15.36918 -15.02652 -14.75896 -14.55282 -14.35940 -13.90464 -13.59527 -13.43916 -13.07090 -12.99790 -12.97798 -12.81449 -12.63989 -12.55860 -12.29962 -12.13407 -12.05934 -11.63744 -11.11944 -11.10728 -10.82886 -10.54320 -10.02855 -9.98084 -8.20476 -6.33865 -0.52189 0.34723 1.23694 1.40884 1.43484 1.43885 1.54981 2.00810 2.43796 2.82078 3.05827 3.09817 3.56621 3.67562 3.92568 4.01256 4.15195 4.20627 4.35931 4.45691 4.47489 4.62980 4.68068 4.70358 4.76392 4.89249 4.98253 4.98861 5.10195 5.20696 5.35121 5.38244 5.45694 5.45942 5.68350 5.80301 5.87551 6.09553 6.49357 6.72816 7.02436 7.35195 8.85990 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041061 B = 0.003040 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.748777 B = 9209.079947 C = 9360.965137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.396 3.604 3 O -0.504 6.504 4 C -0.180 4.180 5 C -0.077 4.077 6 C -0.118 4.118 7 C -0.069 4.069 8 C 0.093 3.907 9 O -0.357 6.357 10 C 0.474 3.526 11 O -0.541 6.541 12 C 0.051 3.949 13 H 0.052 0.948 14 C -0.121 4.121 15 C -0.539 4.539 16 H 0.057 0.943 17 C 0.023 3.977 18 N -0.909 5.909 19 Si 0.964 3.036 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.275 1.275 23 C -0.114 4.114 24 C -0.058 4.058 25 H 0.117 0.883 26 H 0.084 0.916 27 H 0.120 0.880 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.029 0.971 35 H 0.268 0.732 36 H 0.149 0.851 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.874 13.575 -9.462 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.278 3.722 3 O -0.383 6.383 4 C -0.181 4.181 5 C -0.095 4.095 6 C -0.136 4.136 7 C -0.070 4.070 8 C 0.020 3.980 9 O -0.275 6.275 10 C 0.320 3.680 11 O -0.430 6.430 12 C 0.032 3.968 13 H 0.070 0.930 14 C -0.179 4.179 15 C -0.577 4.577 16 H 0.075 0.925 17 C -0.177 4.177 18 N -0.548 5.548 19 Si 0.789 3.211 20 H -0.197 1.197 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.132 4.132 24 C -0.076 4.076 25 H 0.136 0.864 26 H 0.103 0.897 27 H 0.139 0.861 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.167 0.833 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -12.452 13.928 -9.583 20.997 hybrid contribution 0.926 -0.986 -0.084 1.355 sum -11.526 12.942 -9.667 19.844 Atomic orbital electron populations 1.22306 0.89950 1.06051 1.06840 1.23142 0.93647 0.86473 0.68950 1.90534 1.73465 1.35556 1.38713 1.20844 0.94428 0.95967 1.06811 1.21501 0.94143 0.98262 0.95626 1.21185 1.00982 0.91508 0.99891 1.19866 0.94834 0.92930 0.99327 1.21973 1.00467 0.94246 0.81346 1.86639 1.69352 1.39706 1.31779 1.24836 0.72259 0.77006 0.93908 1.90482 1.50676 1.57681 1.44169 1.18681 0.98092 0.95266 0.84800 0.93003 1.21566 0.97813 0.96011 1.02514 1.21262 1.37354 1.05618 0.93457 0.92466 1.25644 0.96389 1.01051 0.94665 1.69961 1.46969 1.40073 0.97769 0.85468 0.78603 0.79396 0.77681 1.19740 1.20046 1.19954 1.21383 0.92677 1.00144 0.98981 1.21775 1.01986 0.89628 0.94221 0.86448 0.89684 0.86135 0.84992 0.84827 0.90595 0.89731 0.93456 0.90384 0.95219 0.92242 0.83308 0.80611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.57 8.93 71.24 0.64 -0.93 16 2 C 0.40 7.11 7.23 28.03 0.20 7.31 16 3 O -0.50 -13.18 17.08 -2.97 -0.05 -13.23 16 4 C -0.18 -3.39 5.87 -20.15 -0.12 -3.51 16 5 C -0.08 -1.72 9.60 22.58 0.22 -1.51 16 6 C -0.12 -2.78 9.68 22.23 0.22 -2.56 16 7 C -0.07 -1.69 5.53 -19.78 -0.11 -1.80 16 8 C 0.09 2.78 5.58 71.24 0.40 3.17 16 9 O -0.36 -13.71 10.11 -51.39 -0.52 -14.23 16 10 C 0.47 21.99 7.25 71.24 0.52 22.51 16 11 O -0.54 -27.25 15.21 21.98 0.33 -26.92 16 12 C 0.05 2.58 2.74 -12.29 -0.03 2.54 16 13 H 0.05 2.74 8.14 -2.38 -0.02 2.72 16 14 C -0.12 -5.72 8.90 71.98 0.64 -5.08 16 15 C -0.54 -30.40 8.37 25.60 0.21 -30.19 16 16 H 0.06 3.38 6.76 -2.91 -0.02 3.36 16 17 C 0.02 1.23 5.30 84.66 0.45 1.68 16 18 N -0.91 -50.21 11.32 21.45 0.24 -49.97 16 19 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 23 C -0.11 -2.17 9.67 22.23 0.22 -1.96 16 24 C -0.06 -0.86 9.47 22.58 0.21 -0.64 16 25 H 0.12 0.49 8.09 -2.39 -0.02 0.47 16 26 H 0.08 0.73 8.12 -2.39 -0.02 0.71 16 27 H 0.12 0.38 8.09 -2.39 -0.02 0.36 16 28 H 0.13 2.92 7.65 -2.91 -0.02 2.90 16 29 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 30 H 0.08 2.25 8.07 -2.39 -0.02 2.23 16 31 H 0.08 2.37 8.07 -2.39 -0.02 2.35 16 32 H 0.05 1.95 8.11 -2.39 -0.02 1.93 16 33 H 0.08 3.98 6.07 -2.39 -0.01 3.97 16 34 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 36 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.18 1.06 7.05 -2.91 -0.02 1.04 16 Total: -1.00 -68.89 325.50 6.76 -62.13 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 1.07 Total: 7.67 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 3.66 Total: -10.97 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.24 Total: -49.97 kcal Atomic # 8 Polarization: -54.14 SS G_CDS: -0.24 Total: -54.38 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -68.89 6.76 -62.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327998042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.849 kcal (2) G-P(sol) polarization free energy of solvation -68.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds