Wall clock time and date at job start Mon Mar 30 2020 01:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99490 * 2 1 4 4 C 1.50702 * 109.46988 * 270.00160 * 3 2 1 5 5 C 1.28877 * 121.25069 * 95.02420 * 4 3 2 6 6 C 1.51428 * 117.49633 * 180.02562 * 5 4 3 7 7 S 1.83830 * 102.54277 * 16.28812 * 6 5 4 8 8 C 1.51431 * 121.24776 * 274.74626 * 4 3 2 9 9 C 1.38814 * 120.00341 * 180.02562 * 2 1 3 10 10 C 1.39799 * 119.58449 * 5.27567 * 9 2 1 11 11 C 1.38599 * 119.49028 * 180.25490 * 10 9 2 12 12 C 1.38387 * 118.68061 * 359.47582 * 11 10 9 13 13 C 1.40554 * 119.14849 * 0.25032 * 12 11 10 14 14 C 1.41321 * 119.78258 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00145 * 0.02562 * 14 13 12 16 16 C 1.40023 * 119.99910 * 180.02562 * 14 13 12 17 17 N 1.30751 * 119.99768 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00318 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46828 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46849 * 119.99999 * 18 16 14 21 21 H 1.48491 * 109.47654 * 240.00200 * 18 16 14 22 22 N 1.31959 * 119.58875 * 184.99690 * 9 2 1 23 23 H 1.08997 * 109.46650 * 269.99385 * 1 2 3 24 24 H 1.08992 * 109.47385 * 29.99939 * 1 2 3 25 25 H 1.09000 * 109.46617 * 150.00346 * 1 2 3 26 26 H 1.08999 * 109.47245 * 29.99984 * 3 2 1 27 27 H 1.09000 * 109.47046 * 150.00446 * 3 2 1 28 28 H 1.07996 * 121.25263 * 359.97438 * 5 4 3 29 29 H 1.08994 * 110.79336 * 134.55347 * 6 5 4 30 30 H 1.09006 * 110.79109 * 257.83165 * 6 5 4 31 31 H 1.08996 * 110.79353 * 281.97150 * 8 4 3 32 32 H 1.08996 * 110.79662 * 45.44951 * 8 4 3 33 33 H 1.07994 * 120.25853 * 0.02562 * 10 9 2 34 34 H 1.08002 * 120.66287 * 179.75684 * 11 10 9 35 35 H 1.08003 * 120.43145 * 180.23235 * 12 11 10 36 36 H 0.97005 * 119.99447 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 6 1.6549 2.5244 -2.0190 6 6 1.9877 2.9037 -3.4467 7 16 3.1937 1.6047 -3.9341 8 6 3.6463 1.1982 -2.1972 9 6 2.1592 -1.2021 -0.0005 10 6 1.4560 -2.4051 -0.1129 11 6 2.1505 -3.6045 -0.1078 12 6 3.5300 -3.5727 -0.0020 13 6 4.1802 -2.3309 0.1021 14 6 5.5883 -2.2828 0.2114 15 1 6.1613 -3.1983 0.2144 16 6 6.2406 -1.0482 0.3159 17 7 5.5469 0.0601 0.3127 18 14 8.1019 -0.9845 0.4611 19 1 8.6474 -2.3656 0.4413 20 1 8.6613 -0.2154 -0.6794 21 1 8.4766 -0.3222 1.7362 22 7 3.4750 -1.1948 0.0994 23 1 -0.3632 -0.0001 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3632 -0.8900 -0.5138 26 1 1.6083 2.0284 0.5138 27 1 3.1499 1.1385 0.5138 28 1 0.7846 2.9257 -1.5211 29 1 1.0985 2.8616 -4.0756 30 1 2.4426 3.8934 -3.4881 31 1 4.5523 1.7247 -1.8971 32 1 3.7631 0.1219 -2.0708 33 1 0.3795 -2.4002 -0.1991 34 1 1.6261 -4.5451 -0.1896 35 1 4.0997 -4.4902 0.0010 36 1 5.9988 0.9153 0.3855 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328057603.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:39 Heat of formation + Delta-G solvation = 68.401842 kcal Electronic energy + Delta-G solvation = -19476.775557 eV Core-core repulsion = 16666.761780 eV Total energy + Delta-G solvation = -2810.013777 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.65777 -37.05957 -34.93287 -33.32079 -30.54196 -29.65940 -29.12978 -27.25472 -25.52356 -25.26816 -23.21708 -21.20540 -20.00575 -17.96269 -17.49640 -16.41398 -15.79991 -15.08246 -14.93112 -14.78818 -14.25515 -14.14287 -13.62361 -13.16421 -12.95907 -12.75949 -12.46683 -12.16176 -12.04922 -11.59368 -11.40782 -11.25537 -11.15273 -11.02599 -10.80706 -10.60562 -10.41624 -10.04897 -9.92800 -9.47675 -8.76994 -8.76169 -7.93649 -7.53250 -7.38422 -6.46995 -6.39867 -4.50457 2.18031 2.27486 2.74779 2.82774 3.10368 3.13776 3.19267 3.26199 3.95381 4.06245 4.78364 4.90252 5.13798 5.39755 5.51755 5.56745 5.67604 5.81243 5.90796 6.03781 6.06947 6.12622 6.21865 6.37963 6.50944 6.59710 6.67453 6.75057 6.87480 6.92919 7.14730 7.20972 7.55783 7.79226 7.91572 7.96005 8.32908 8.48051 8.76247 9.06371 10.16859 10.33064 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.008312 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.499649 B = 3367.809505 C = 4619.987921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.616 5.616 3 C 0.173 3.827 4 C -0.097 4.097 5 C -0.193 4.193 6 C -0.031 4.031 7 S -0.329 6.329 8 C -0.003 4.003 9 C 0.410 3.590 10 C -0.364 4.364 11 C -0.031 4.031 12 C -0.315 4.315 13 C 0.292 3.708 14 C -0.431 4.431 15 H 0.082 0.918 16 C 0.076 3.924 17 N -0.717 5.717 18 Si 0.901 3.099 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.275 1.275 22 N -0.525 5.525 23 H 0.036 0.964 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.693 6.386 -1.584 8.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.333 5.333 3 C 0.048 3.952 4 C -0.101 4.101 5 C -0.214 4.214 6 C -0.179 4.179 7 S -0.103 6.103 8 C -0.149 4.149 9 C 0.172 3.828 10 C -0.390 4.390 11 C -0.055 4.055 12 C -0.338 4.338 13 C 0.165 3.835 14 C -0.463 4.463 15 H 0.100 0.900 16 C -0.148 4.148 17 N -0.340 5.340 18 Si 0.726 3.274 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.200 1.200 22 N -0.246 5.246 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.138 0.862 28 H 0.145 0.855 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.145 0.855 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.913 7.026 -2.609 8.961 hybrid contribution -0.109 -0.315 0.947 1.004 sum -5.022 6.711 -1.662 8.545 Atomic orbital electron populations 1.21417 0.80691 1.01635 0.99916 1.45888 1.03407 1.02655 1.81350 1.20126 0.99778 0.84760 0.90536 1.22214 0.93981 0.94910 0.98962 1.22366 1.01296 1.02284 0.95430 1.22929 0.99470 0.98871 0.96611 1.87966 1.55348 1.49581 1.17430 1.23130 0.98314 1.07187 0.86316 1.18487 0.90401 0.83811 0.90092 1.20653 0.98046 0.92489 1.27799 1.20595 0.94112 0.95674 0.95157 1.21548 0.93967 0.98165 1.20092 1.18200 0.93060 0.85653 0.86603 1.19587 0.90504 0.93381 1.42809 0.90010 1.25960 0.99937 0.95535 0.93389 1.70103 1.36069 0.97940 1.29855 0.86370 0.83059 0.79522 0.78457 1.18569 1.19930 1.20008 1.68179 1.02203 1.29279 1.24921 0.94517 0.92903 0.91591 0.92271 0.86181 0.85527 0.88512 0.89055 0.88198 0.85465 0.88966 0.88956 0.88772 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.65 10.28 59.85 0.62 2.27 16 2 N -0.62 -11.93 2.97 -183.07 -0.54 -12.47 16 3 C 0.17 3.11 5.71 -5.19 -0.03 3.08 16 4 C -0.10 -1.67 5.52 -100.14 -0.55 -2.23 16 5 C -0.19 -2.81 9.88 -35.10 -0.35 -3.16 16 6 C -0.03 -0.43 7.46 36.36 0.27 -0.16 16 7 S -0.33 -5.93 23.55 -107.50 -2.53 -8.46 16 8 C 0.00 -0.05 7.32 36.36 0.27 0.22 16 9 C 0.41 9.54 7.37 -155.33 -1.15 8.39 16 10 C -0.36 -8.23 9.29 -38.86 -0.36 -8.59 16 11 C -0.03 -0.71 10.15 -39.39 -0.40 -1.11 16 12 C -0.31 -7.76 9.83 -38.65 -0.38 -8.14 16 13 C 0.29 7.70 6.55 -85.00 -0.56 7.14 16 14 C -0.43 -11.08 9.14 -37.74 -0.34 -11.43 16 15 H 0.08 2.02 7.85 -52.48 -0.41 1.61 16 16 C 0.08 1.83 5.50 -17.34 -0.10 1.73 16 17 N -0.72 -17.04 10.98 55.55 0.61 -16.43 16 18 Si 0.90 18.06 29.56 -169.99 -5.02 13.03 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 N -0.52 -13.27 5.73 -10.33 -0.06 -13.33 16 23 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 25 H 0.07 1.02 5.95 -51.93 -0.31 0.72 16 26 H 0.06 0.89 7.98 -51.93 -0.41 0.48 16 27 H 0.12 2.51 6.81 -51.93 -0.35 2.16 16 28 H 0.13 1.54 8.05 -52.49 -0.42 1.12 16 29 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 32 H 0.13 2.99 7.30 -51.93 -0.38 2.61 16 33 H 0.09 1.87 6.00 -52.49 -0.31 1.55 16 34 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 36 H 0.27 5.82 8.29 -40.82 -0.34 5.48 16 LS Contribution 313.10 15.07 4.72 4.72 Total: -1.00 -27.09 313.10 -10.59 -37.68 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -4.70 Total: 7.24 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -3.06 Total: -11.97 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.01 Total: -42.24 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.02 Total: 13.03 kcal Atomic # 16 Polarization: -5.93 SS G_CDS: -2.53 Total: -8.46 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.09 -10.59 -37.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328057603.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.083 kcal (2) G-P(sol) polarization free energy of solvation -27.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds