Wall clock time and date at job start Mon Mar 30 2020 01:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99490 * 2 1 4 4 C 1.50702 * 109.46988 * 270.00160 * 3 2 1 5 5 C 1.28877 * 121.25069 * 95.02420 * 4 3 2 6 6 C 1.51428 * 117.49633 * 180.02562 * 5 4 3 7 7 S 1.83830 * 102.54277 * 16.28812 * 6 5 4 8 8 C 1.51431 * 121.24776 * 274.74626 * 4 3 2 9 9 C 1.38814 * 120.00341 * 180.02562 * 2 1 3 10 10 C 1.39799 * 119.58449 * 5.27567 * 9 2 1 11 11 C 1.38599 * 119.49028 * 180.25490 * 10 9 2 12 12 C 1.38387 * 118.68061 * 359.47582 * 11 10 9 13 13 C 1.40554 * 119.14849 * 0.25032 * 12 11 10 14 14 C 1.41321 * 119.78258 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00145 * 0.02562 * 14 13 12 16 16 C 1.40023 * 119.99910 * 180.02562 * 14 13 12 17 17 N 1.30751 * 119.99768 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00318 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46828 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46849 * 119.99999 * 18 16 14 21 21 H 1.48491 * 109.47654 * 240.00200 * 18 16 14 22 22 N 1.31959 * 119.58875 * 184.99690 * 9 2 1 23 23 H 1.08997 * 109.46650 * 269.99385 * 1 2 3 24 24 H 1.08992 * 109.47385 * 29.99939 * 1 2 3 25 25 H 1.09000 * 109.46617 * 150.00346 * 1 2 3 26 26 H 1.08999 * 109.47245 * 29.99984 * 3 2 1 27 27 H 1.09000 * 109.47046 * 150.00446 * 3 2 1 28 28 H 1.07996 * 121.25263 * 359.97438 * 5 4 3 29 29 H 1.08994 * 110.79336 * 134.55347 * 6 5 4 30 30 H 1.09006 * 110.79109 * 257.83165 * 6 5 4 31 31 H 1.08996 * 110.79353 * 281.97150 * 8 4 3 32 32 H 1.08996 * 110.79662 * 45.44951 * 8 4 3 33 33 H 1.07994 * 120.25853 * 0.02562 * 10 9 2 34 34 H 1.08002 * 120.66287 * 179.75684 * 11 10 9 35 35 H 1.08003 * 120.43145 * 180.23235 * 12 11 10 36 36 H 0.97005 * 119.99447 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 6 1.6549 2.5244 -2.0190 6 6 1.9877 2.9037 -3.4467 7 16 3.1937 1.6047 -3.9341 8 6 3.6463 1.1982 -2.1972 9 6 2.1592 -1.2021 -0.0005 10 6 1.4560 -2.4051 -0.1129 11 6 2.1505 -3.6045 -0.1078 12 6 3.5300 -3.5727 -0.0020 13 6 4.1802 -2.3309 0.1021 14 6 5.5883 -2.2828 0.2114 15 1 6.1613 -3.1983 0.2144 16 6 6.2406 -1.0482 0.3159 17 7 5.5469 0.0601 0.3127 18 14 8.1019 -0.9845 0.4611 19 1 8.6474 -2.3656 0.4413 20 1 8.6613 -0.2154 -0.6794 21 1 8.4766 -0.3222 1.7362 22 7 3.4750 -1.1948 0.0994 23 1 -0.3632 -0.0001 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3632 -0.8900 -0.5138 26 1 1.6083 2.0284 0.5138 27 1 3.1499 1.1385 0.5138 28 1 0.7846 2.9257 -1.5211 29 1 1.0985 2.8616 -4.0756 30 1 2.4426 3.8934 -3.4881 31 1 4.5523 1.7247 -1.8971 32 1 3.7631 0.1219 -2.0708 33 1 0.3795 -2.4002 -0.1991 34 1 1.6261 -4.5451 -0.1896 35 1 4.0997 -4.4902 0.0010 36 1 5.9988 0.9153 0.3855 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328057603.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:38 Heat of formation + Delta-G solvation = 56.302723 kcal Electronic energy + Delta-G solvation = -19477.300214 eV Core-core repulsion = 16666.761780 eV Total energy + Delta-G solvation = -2810.538434 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.31573 -38.50775 -36.43850 -35.07702 -32.31149 -31.26251 -30.57250 -28.69465 -27.23232 -26.69445 -24.66780 -22.98833 -21.64744 -19.30474 -19.26202 -17.92149 -17.32236 -16.63004 -16.52118 -16.25583 -15.94544 -15.55864 -15.06232 -14.77890 -14.43287 -14.14139 -13.93040 -13.76611 -13.59533 -12.96074 -12.85717 -12.78960 -12.69530 -12.53986 -12.42328 -12.24854 -12.03482 -11.69729 -11.40278 -11.22021 -10.45882 -10.04954 -9.74818 -9.32922 -8.81392 -8.19292 -8.10600 -6.40799 0.89075 0.96416 1.09561 1.38190 1.43017 1.43332 1.54404 1.57407 2.26274 2.62084 2.96254 3.64137 3.87620 4.10155 4.26891 4.33594 4.40411 4.48568 4.50271 4.52397 4.66072 4.77200 4.82657 4.90968 4.94732 5.03293 5.06837 5.12811 5.29558 5.37532 5.37707 5.73191 5.86300 6.01486 6.15112 6.19761 6.65153 6.71336 6.94415 7.24388 8.36738 8.53044 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.008312 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.499649 B = 3367.809505 C = 4619.987921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.617 5.617 3 C 0.177 3.823 4 C -0.130 4.130 5 C -0.157 4.157 6 C -0.017 4.017 7 S -0.378 6.378 8 C 0.011 3.989 9 C 0.394 3.606 10 C -0.371 4.371 11 C -0.032 4.032 12 C -0.349 4.349 13 C 0.260 3.740 14 C -0.467 4.467 15 H 0.077 0.923 16 C 0.037 3.963 17 N -0.729 5.729 18 Si 0.971 3.029 19 H -0.264 1.264 20 H -0.271 1.271 21 H -0.266 1.266 22 N -0.538 5.538 23 H 0.050 0.950 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.167 0.833 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.095 0.905 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.766 8.679 -1.799 11.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.333 5.333 3 C 0.052 3.948 4 C -0.133 4.133 5 C -0.177 4.177 6 C -0.164 4.164 7 S -0.152 6.152 8 C -0.137 4.137 9 C 0.155 3.845 10 C -0.397 4.397 11 C -0.056 4.056 12 C -0.372 4.372 13 C 0.133 3.867 14 C -0.499 4.499 15 H 0.095 0.905 16 C -0.186 4.186 17 N -0.350 5.350 18 Si 0.793 3.207 19 H -0.187 1.187 20 H -0.196 1.196 21 H -0.191 1.191 22 N -0.260 5.260 23 H 0.069 0.931 24 H 0.103 0.897 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.101 0.899 28 H 0.184 0.816 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.113 0.887 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.030 9.340 -2.825 12.027 hybrid contribution 0.378 -0.929 0.956 1.386 sum -6.652 8.411 -1.869 10.885 Atomic orbital electron populations 1.21653 0.78072 1.03032 1.01223 1.46167 1.04972 1.01843 1.80340 1.20080 0.98689 0.84910 0.91118 1.22001 0.94616 0.97798 0.98893 1.22709 1.00578 0.99241 0.95153 1.23184 0.98922 0.97959 0.96322 1.88100 1.57705 1.52177 1.17230 1.22761 0.99366 1.03935 0.87594 1.18943 0.90229 0.85833 0.89529 1.21025 0.99420 0.92271 1.26948 1.20953 0.93517 0.97299 0.93850 1.21675 0.95224 0.97818 1.22481 1.18625 0.93922 0.86829 0.87344 1.19809 0.90956 0.94199 1.44890 0.90524 1.26644 1.04104 0.94814 0.93033 1.70175 1.37643 0.98275 1.28948 0.85316 0.77537 0.79247 0.78575 1.18743 1.19577 1.19114 1.68189 1.03378 1.28911 1.25524 0.93132 0.89722 0.91948 0.88645 0.89933 0.81563 0.85696 0.86407 0.89789 0.90394 0.86356 0.85955 0.88721 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.80 10.28 127.77 1.31 4.11 16 2 N -0.62 -23.02 2.97 -733.11 -2.18 -25.19 16 3 C 0.18 6.10 5.71 85.63 0.49 6.58 16 4 C -0.13 -4.25 5.52 -14.14 -0.08 -4.32 16 5 C -0.16 -3.86 9.88 28.00 0.28 -3.58 16 6 C -0.02 -0.40 7.46 71.47 0.53 0.13 16 7 S -0.38 -13.37 23.55 -56.49 -1.33 -14.70 16 8 C 0.01 0.43 7.32 71.47 0.52 0.96 16 9 C 0.39 18.52 7.37 133.42 0.98 19.51 16 10 C -0.37 -16.63 9.29 22.73 0.21 -16.42 16 11 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 12 C -0.35 -18.00 9.83 22.87 0.22 -17.78 16 13 C 0.26 14.47 6.55 40.18 0.26 14.74 16 14 C -0.47 -25.42 9.14 23.46 0.21 -25.21 16 15 H 0.08 4.05 7.85 -2.91 -0.02 4.03 16 16 C 0.04 1.85 5.50 85.29 0.47 2.32 16 17 N -0.73 -36.13 10.98 21.84 0.24 -35.89 16 18 Si 0.97 38.31 29.56 68.60 2.03 40.34 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 20 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 21 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 22 N -0.54 -28.35 5.73 -186.59 -1.07 -29.42 16 23 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.08 1.77 8.07 -2.39 -0.02 1.75 16 25 H 0.06 1.74 5.95 -2.39 -0.01 1.73 16 26 H 0.10 2.54 7.98 -2.39 -0.02 2.52 16 27 H 0.08 3.51 6.81 -2.39 -0.02 3.49 16 28 H 0.17 2.88 8.05 -2.91 -0.02 2.86 16 29 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 32 H 0.08 3.89 7.30 -2.39 -0.02 3.87 16 33 H 0.12 4.56 6.00 -2.91 -0.02 4.54 16 34 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 35 H 0.09 4.66 8.06 -2.91 -0.02 4.63 16 36 H 0.27 12.36 8.29 -92.70 -0.77 11.59 16 Total: -1.00 -63.25 313.10 4.42 -58.83 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 1.08 Total: 26.23 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 5.65 Total: -20.20 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -3.01 Total: -90.51 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Atomic # 16 Polarization: -13.37 SS G_CDS: -1.33 Total: -14.70 kcal Total: -63.25 4.42 -58.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328057603.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.132 kcal (2) G-P(sol) polarization free energy of solvation -63.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds