Wall clock time and date at job start Mon Mar 30 2020 01:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00428 * 2 1 4 4 H 1.48502 * 109.46993 * 273.94143 * 3 2 1 5 5 H 1.48498 * 109.47368 * 33.93892 * 3 2 1 6 6 H 1.48502 * 109.47161 * 153.94333 * 3 2 1 7 7 C 1.37879 * 119.99263 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00793 * 353.57957 * 7 2 1 9 9 C 1.50700 * 119.99578 * 173.85808 * 7 2 1 10 10 C 1.53002 * 115.55153 * 294.60394 * 9 7 2 11 11 O 1.45200 * 109.47164 * 294.97985 * 10 9 7 12 12 C 1.34227 * 116.99930 * 184.16026 * 11 10 9 13 13 O 1.20822 * 120.00232 * 5.04268 * 12 11 10 14 14 C 1.50698 * 119.99940 * 185.04613 * 12 11 10 15 15 C 1.50703 * 109.47323 * 185.05684 * 14 12 11 16 16 C 1.38158 * 120.02814 * 264.99881 * 15 14 12 17 17 C 1.38240 * 120.06008 * 179.97438 * 16 15 14 18 18 C 1.38298 * 120.10627 * 0.02562 * 17 16 15 19 19 C 1.38119 * 120.05819 * 0.02562 * 18 17 16 20 20 C 1.38709 * 120.02718 * 84.71890 * 15 14 12 21 21 O 1.35909 * 120.05695 * 0.02562 * 20 15 14 22 22 C 1.52998 * 117.49769 * 148.93526 * 9 7 2 23 23 C 1.53003 * 117.49945 * 80.27839 * 9 7 2 24 24 H 0.97011 * 119.99680 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46632 * 54.97733 * 10 9 7 26 26 H 1.09002 * 109.47130 * 174.97890 * 10 9 7 27 27 H 1.09006 * 109.46984 * 305.05402 * 14 12 11 28 28 H 1.08997 * 109.47194 * 65.05276 * 14 12 11 29 29 H 1.08007 * 119.97199 * 359.97438 * 16 15 14 30 30 H 1.07998 * 119.95175 * 180.02562 * 17 16 15 31 31 H 1.07997 * 119.96975 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.03322 * 179.97438 * 19 18 17 33 33 H 0.96693 * 114.00341 * 89.99558 * 21 20 15 34 34 H 1.09006 * 117.50293 * 359.97438 * 22 9 7 35 35 H 1.09004 * 117.49920 * 145.02270 * 22 9 7 36 36 H 1.09000 * 117.49525 * 214.98009 * 23 9 7 37 37 H 1.09000 * 117.49837 * 359.97009 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4134 2.0944 -1.3968 5 1 1.4909 2.6272 0.7816 6 1 3.5860 1.4173 0.6150 7 6 2.0044 -1.1942 0.0005 8 1 1.4695 -2.1265 0.1055 9 6 3.5049 -1.1980 -0.1391 10 6 4.0443 -0.6936 -1.4791 11 8 3.6292 -1.5956 -2.5385 12 6 4.0938 -1.3417 -3.7719 13 8 4.8943 -0.4535 -3.9450 14 6 3.6169 -2.1646 -4.9409 15 6 4.3759 -1.7645 -6.1798 16 6 3.8430 -0.8286 -7.0451 17 6 4.5389 -0.4607 -8.1814 18 6 5.7697 -1.0287 -8.4554 19 6 6.3064 -1.9656 -7.5942 20 6 5.6129 -2.3314 -6.4493 21 8 6.1417 -3.2485 -5.5971 22 6 4.2760 -2.3229 0.5544 23 6 4.3317 -0.8989 1.1130 24 1 -0.4850 0.8402 -0.0004 25 1 3.6514 0.3039 -1.6765 26 1 5.1329 -0.6544 -1.4410 27 1 3.7881 -3.2213 -4.7353 28 1 2.5518 -1.9925 -5.0958 29 1 2.8817 -0.3838 -6.8335 30 1 4.1208 0.2714 -8.8564 31 1 6.3113 -0.7400 -9.3441 32 1 7.2674 -2.4092 -7.8087 33 1 5.8993 -4.1618 -5.8022 34 1 3.6980 -3.0600 1.1120 35 1 5.1678 -2.7033 0.0562 36 1 5.2601 -0.3429 0.9821 37 1 3.7904 -0.6988 2.0377 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330172790.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:51 Heat of formation + Delta-G solvation = -77.111228 kcal Electronic energy + Delta-G solvation = -21006.825056 eV Core-core repulsion = 17715.455737 eV Total energy + Delta-G solvation = -3291.369319 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38403 -39.37650 -37.06805 -36.73569 -35.34302 -32.94219 -32.13973 -30.07208 -28.31989 -26.83562 -25.15028 -22.74133 -22.25719 -21.58490 -20.20846 -19.14217 -18.44304 -17.18273 -16.74445 -16.38730 -16.09593 -15.60458 -15.26880 -15.19584 -14.67597 -14.01212 -13.76987 -13.30000 -13.17973 -12.73343 -12.57849 -12.28970 -12.16220 -11.97179 -11.95613 -11.46530 -11.06728 -10.88289 -10.61501 -10.56307 -10.33287 -10.02139 -9.91759 -9.51796 -9.06352 -8.97895 -8.69662 -8.67098 -8.48318 -6.13048 -4.13030 1.09930 1.20090 2.72594 3.17378 3.26097 3.36443 3.41757 3.67018 4.07595 4.39246 4.54114 4.72821 4.85676 4.89019 5.11987 5.18970 5.30521 5.39499 5.45173 5.51109 5.68917 5.77948 5.85005 5.90210 6.02200 6.16310 6.20574 6.32338 6.36790 6.38999 6.47685 6.67158 6.69498 6.89168 7.09135 7.21270 7.55011 7.69921 8.34715 8.49270 8.90801 9.49809 10.98801 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.024256 B = 0.004718 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.092194 B = 5933.131867 C = 6456.198027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.079 3.921 3 Si 0.859 3.141 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.249 1.249 7 C -0.477 4.477 8 H 0.080 0.920 9 C -0.009 4.009 10 C 0.108 3.892 11 O -0.328 6.328 12 C 0.459 3.541 13 O -0.516 6.516 14 C -0.071 4.071 15 C -0.096 4.096 16 C -0.088 4.088 17 C -0.129 4.129 18 C -0.105 4.105 19 C -0.148 4.148 20 C 0.122 3.878 21 O -0.493 6.493 22 C -0.175 4.175 23 C -0.182 4.182 24 H 0.265 0.735 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.388 0.612 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.405 -5.001 -15.276 18.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.123 4.123 3 Si 0.686 3.314 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.172 1.172 7 C -0.514 4.514 8 H 0.098 0.902 9 C -0.010 4.010 10 C 0.034 3.966 11 O -0.244 6.244 12 C 0.302 3.698 13 O -0.405 6.405 14 C -0.108 4.108 15 C -0.096 4.096 16 C -0.106 4.106 17 C -0.147 4.147 18 C -0.123 4.123 19 C -0.166 4.166 20 C 0.077 3.923 21 O -0.303 6.303 22 C -0.212 4.212 23 C -0.220 4.220 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.244 0.756 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.724 -4.130 -14.982 18.332 hybrid contribution 0.292 0.754 -0.180 0.829 sum 10.015 -3.376 -15.162 18.482 Atomic orbital electron populations 1.69896 1.06231 1.27047 1.49971 1.24909 0.94554 0.98814 0.94032 0.87142 0.81773 0.84039 0.78443 1.20584 1.21396 1.17215 1.20231 0.86492 0.94706 1.49945 0.90194 1.19339 0.95143 0.99751 0.86719 1.22922 0.96843 0.91472 0.85333 1.86562 1.67540 1.53850 1.16402 1.23325 0.78833 0.82816 0.84825 1.90624 1.32300 1.31881 1.85729 1.20116 1.01449 1.01124 0.88136 1.19731 0.94428 0.99410 0.96074 1.21004 1.00295 0.95484 0.93819 1.21128 0.95418 1.00463 0.97698 1.21022 0.95698 0.96347 0.99230 1.21365 1.00732 1.00443 0.94085 1.18289 0.90973 0.93531 0.89497 1.84902 1.73829 1.18623 1.52985 1.22787 1.01551 0.91782 1.05101 1.23080 1.00963 0.98413 0.99525 0.92533 0.92291 0.93204 0.87042 0.86624 0.85369 0.85679 0.85717 0.85458 0.75626 0.89320 0.90807 0.91098 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.96 55.43 0.77 -26.24 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 3 Si 0.86 21.53 24.99 -169.99 -4.25 17.28 16 4 H -0.28 -7.07 7.04 56.52 0.40 -6.68 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.25 -5.84 5.70 56.52 0.32 -5.51 16 7 C -0.48 -13.33 9.33 -34.44 -0.32 -13.65 16 8 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 9 C -0.01 -0.20 1.06 -155.66 -0.17 -0.37 16 10 C 0.11 2.51 5.01 37.16 0.19 2.69 16 11 O -0.33 -7.29 10.15 -39.25 -0.40 -7.69 16 12 C 0.46 9.04 7.94 36.00 0.29 9.32 16 13 O -0.52 -11.48 15.71 -18.75 -0.29 -11.77 16 14 C -0.07 -1.00 5.66 -29.03 -0.16 -1.17 16 15 C -0.10 -1.30 4.39 -104.48 -0.46 -1.76 16 16 C -0.09 -1.09 9.68 -39.61 -0.38 -1.47 16 17 C -0.13 -1.38 10.04 -39.56 -0.40 -1.77 16 18 C -0.10 -1.06 10.04 -39.60 -0.40 -1.46 16 19 C -0.15 -1.65 9.99 -39.43 -0.39 -2.05 16 20 C 0.12 1.57 6.68 -39.22 -0.26 1.31 16 21 O -0.49 -5.99 12.65 -19.45 -0.25 -6.24 16 22 C -0.18 -3.61 9.96 -26.70 -0.27 -3.87 16 23 C -0.18 -3.86 8.00 -26.69 -0.21 -4.08 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.06 1.45 5.10 -51.93 -0.27 1.19 16 26 H 0.05 1.09 7.94 -51.93 -0.41 0.67 16 27 H 0.11 1.31 7.70 -51.93 -0.40 0.91 16 28 H 0.12 1.43 8.05 -51.93 -0.42 1.01 16 29 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.39 2.54 9.06 45.56 0.41 2.95 16 34 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 LS Contribution 319.57 15.07 4.82 4.82 Total: -1.00 -34.58 319.57 -6.75 -41.33 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.11 Total: 4.67 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -3.05 Total: -16.15 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.77 Total: -26.24 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.94 Total: -25.70 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.25 Total: 17.28 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.58 -6.75 -41.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330172790.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.777 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds