Wall clock time and date at job start Mon Mar 30 2020 01:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00428 * 2 1 4 4 H 1.48502 * 109.46993 * 273.94143 * 3 2 1 5 5 H 1.48498 * 109.47368 * 33.93892 * 3 2 1 6 6 H 1.48502 * 109.47161 * 153.94333 * 3 2 1 7 7 C 1.37879 * 119.99263 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00793 * 353.57957 * 7 2 1 9 9 C 1.50700 * 119.99578 * 173.85808 * 7 2 1 10 10 C 1.53002 * 115.55153 * 294.60394 * 9 7 2 11 11 O 1.45200 * 109.47164 * 294.97985 * 10 9 7 12 12 C 1.34227 * 116.99930 * 184.16026 * 11 10 9 13 13 O 1.20822 * 120.00232 * 5.04268 * 12 11 10 14 14 C 1.50698 * 119.99940 * 185.04613 * 12 11 10 15 15 C 1.50703 * 109.47323 * 185.05684 * 14 12 11 16 16 C 1.38158 * 120.02814 * 264.99881 * 15 14 12 17 17 C 1.38240 * 120.06008 * 179.97438 * 16 15 14 18 18 C 1.38298 * 120.10627 * 0.02562 * 17 16 15 19 19 C 1.38119 * 120.05819 * 0.02562 * 18 17 16 20 20 C 1.38709 * 120.02718 * 84.71890 * 15 14 12 21 21 O 1.35909 * 120.05695 * 0.02562 * 20 15 14 22 22 C 1.52998 * 117.49769 * 148.93526 * 9 7 2 23 23 C 1.53003 * 117.49945 * 80.27839 * 9 7 2 24 24 H 0.97011 * 119.99680 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46632 * 54.97733 * 10 9 7 26 26 H 1.09002 * 109.47130 * 174.97890 * 10 9 7 27 27 H 1.09006 * 109.46984 * 305.05402 * 14 12 11 28 28 H 1.08997 * 109.47194 * 65.05276 * 14 12 11 29 29 H 1.08007 * 119.97199 * 359.97438 * 16 15 14 30 30 H 1.07998 * 119.95175 * 180.02562 * 17 16 15 31 31 H 1.07997 * 119.96975 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.03322 * 179.97438 * 19 18 17 33 33 H 0.96693 * 114.00341 * 89.99558 * 21 20 15 34 34 H 1.09006 * 117.50293 * 359.97438 * 22 9 7 35 35 H 1.09004 * 117.49920 * 145.02270 * 22 9 7 36 36 H 1.09000 * 117.49525 * 214.98009 * 23 9 7 37 37 H 1.09000 * 117.49837 * 359.97009 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4134 2.0944 -1.3968 5 1 1.4909 2.6272 0.7816 6 1 3.5860 1.4173 0.6150 7 6 2.0044 -1.1942 0.0005 8 1 1.4695 -2.1265 0.1055 9 6 3.5049 -1.1980 -0.1391 10 6 4.0443 -0.6936 -1.4791 11 8 3.6292 -1.5956 -2.5385 12 6 4.0938 -1.3417 -3.7719 13 8 4.8943 -0.4535 -3.9450 14 6 3.6169 -2.1646 -4.9409 15 6 4.3759 -1.7645 -6.1798 16 6 3.8430 -0.8286 -7.0451 17 6 4.5389 -0.4607 -8.1814 18 6 5.7697 -1.0287 -8.4554 19 6 6.3064 -1.9656 -7.5942 20 6 5.6129 -2.3314 -6.4493 21 8 6.1417 -3.2485 -5.5971 22 6 4.2760 -2.3229 0.5544 23 6 4.3317 -0.8989 1.1130 24 1 -0.4850 0.8402 -0.0004 25 1 3.6514 0.3039 -1.6765 26 1 5.1329 -0.6544 -1.4410 27 1 3.7881 -3.2213 -4.7353 28 1 2.5518 -1.9925 -5.0958 29 1 2.8817 -0.3838 -6.8335 30 1 4.1208 0.2714 -8.8564 31 1 6.3113 -0.7400 -9.3441 32 1 7.2674 -2.4092 -7.8087 33 1 5.8993 -4.1618 -5.8022 34 1 3.6980 -3.0600 1.1120 35 1 5.1678 -2.7033 0.0562 36 1 5.2601 -0.3429 0.9821 37 1 3.7904 -0.6988 2.0377 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330172790.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:50 Heat of formation + Delta-G solvation = -99.994639 kcal Electronic energy + Delta-G solvation = -21007.817355 eV Core-core repulsion = 17715.455737 eV Total energy + Delta-G solvation = -3292.361618 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.68527 -40.56756 -38.79212 -37.59797 -37.01666 -34.30785 -33.97062 -30.93607 -29.66095 -28.39418 -27.12361 -23.62260 -23.46219 -23.12983 -21.53854 -21.06657 -19.31852 -18.82837 -18.51567 -17.75310 -17.36331 -16.90920 -16.66779 -16.37789 -16.10239 -15.48710 -14.99845 -14.83443 -14.62121 -14.22818 -14.17263 -13.71883 -13.26821 -13.17828 -13.02358 -12.99014 -12.83324 -12.35771 -12.28046 -12.14376 -11.76712 -11.63958 -11.44510 -11.37897 -11.01487 -10.65132 -10.41978 -9.85922 -9.55348 -8.33182 -6.36583 0.21498 0.35046 1.19852 1.26667 1.32523 1.43212 1.79880 2.30586 2.73333 2.95066 3.25752 3.29208 3.53507 3.85179 3.86422 3.96925 4.10994 4.14124 4.26395 4.28528 4.38822 4.44018 4.53221 4.62422 4.64896 4.85244 4.93722 4.96529 5.01619 5.18243 5.39505 5.45576 5.47470 5.52940 5.58887 5.64729 5.92245 6.27863 6.67336 6.78626 6.85501 7.29353 8.82403 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.024256 B = 0.004718 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.092194 B = 5933.131867 C = 6456.198027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.029 3.971 3 Si 0.913 3.087 4 H -0.286 1.286 5 H -0.285 1.285 6 H -0.220 1.220 7 C -0.475 4.475 8 H 0.038 0.962 9 C -0.043 4.043 10 C 0.111 3.889 11 O -0.345 6.345 12 C 0.454 3.546 13 O -0.544 6.544 14 C -0.064 4.064 15 C -0.122 4.122 16 C -0.104 4.104 17 C -0.134 4.134 18 C -0.100 4.100 19 C -0.156 4.156 20 C 0.109 3.891 21 O -0.510 6.510 22 C -0.156 4.156 23 C -0.169 4.169 24 H 0.266 0.734 25 H 0.039 0.961 26 H 0.066 0.934 27 H 0.134 0.866 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.145 0.855 33 H 0.409 0.591 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.712 -4.819 -16.421 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.169 4.169 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.212 1.212 6 H -0.142 1.142 7 C -0.513 4.513 8 H 0.057 0.943 9 C -0.044 4.044 10 C 0.037 3.963 11 O -0.261 6.261 12 C 0.299 3.701 13 O -0.435 6.435 14 C -0.101 4.101 15 C -0.122 4.122 16 C -0.122 4.122 17 C -0.152 4.152 18 C -0.118 4.118 19 C -0.175 4.175 20 C 0.065 3.935 21 O -0.324 6.324 22 C -0.193 4.193 23 C -0.206 4.206 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.167 0.833 31 H 0.174 0.826 32 H 0.163 0.837 33 H 0.268 0.732 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.047 -3.984 -16.126 20.519 hybrid contribution -0.423 0.582 0.103 0.727 sum 11.624 -3.401 -16.022 20.085 Atomic orbital electron populations 1.70024 1.07963 1.27953 1.52181 1.25634 0.95139 1.02204 0.93966 0.86269 0.81883 0.79873 0.78161 1.21298 1.21163 1.14247 1.20355 0.89034 0.93016 1.48860 0.94326 1.19251 0.93041 1.03756 0.88328 1.22740 0.97494 0.90692 0.85339 1.86583 1.68154 1.53919 1.17458 1.24384 0.77991 0.82821 0.84864 1.90592 1.33681 1.33334 1.85901 1.20246 1.02197 1.01378 0.86267 1.19801 0.95298 1.00924 0.96199 1.21239 1.00885 0.95548 0.94553 1.21469 0.95594 1.00710 0.97411 1.21437 0.95435 0.95156 0.99786 1.21657 1.01390 1.00715 0.93715 1.18509 0.90960 0.93920 0.90136 1.84834 1.73983 1.20135 1.53410 1.22855 1.01441 0.91400 1.03605 1.23136 1.00978 0.98982 0.97540 0.92466 0.94235 0.91574 0.84804 0.85196 0.85022 0.83270 0.82635 0.83678 0.73184 0.89420 0.88234 0.88421 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.63 13.96 21.45 0.30 -58.33 16 2 C 0.03 1.67 5.47 84.66 0.46 2.13 16 3 Si 0.91 44.49 24.99 68.60 1.71 46.20 16 4 H -0.29 -14.17 7.04 99.48 0.70 -13.47 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.22 -9.60 5.70 99.48 0.57 -9.03 16 7 C -0.48 -27.09 9.33 25.60 0.24 -26.85 16 8 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 9 C -0.04 -2.00 1.06 -52.93 -0.06 -2.06 16 10 C 0.11 5.05 5.01 71.98 0.36 5.41 16 11 O -0.35 -15.26 10.15 -51.38 -0.52 -15.79 16 12 C 0.45 17.70 7.94 71.24 0.57 18.27 16 13 O -0.54 -24.01 15.71 21.97 0.35 -23.67 16 14 C -0.06 -1.77 5.66 29.10 0.16 -1.60 16 15 C -0.12 -3.19 4.39 -19.77 -0.09 -3.28 16 16 C -0.10 -2.47 9.68 22.25 0.22 -2.25 16 17 C -0.13 -2.57 10.04 22.28 0.22 -2.34 16 18 C -0.10 -1.75 10.04 22.26 0.22 -1.53 16 19 C -0.16 -3.16 9.99 22.37 0.22 -2.93 16 20 C 0.11 2.67 6.68 22.51 0.15 2.82 16 21 O -0.51 -11.68 12.65 -92.52 -1.17 -12.85 16 22 C -0.16 -6.08 9.96 30.62 0.30 -5.77 16 23 C -0.17 -6.69 8.00 30.62 0.24 -6.44 16 24 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 25 H 0.04 1.93 5.10 -2.39 -0.01 1.91 16 26 H 0.07 2.75 7.94 -2.39 -0.02 2.73 16 27 H 0.13 3.00 7.70 -2.38 -0.02 2.98 16 28 H 0.13 3.15 8.05 -2.39 -0.02 3.13 16 29 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.41 4.74 9.06 -74.06 -0.67 4.07 16 34 H 0.09 3.41 8.14 -2.38 -0.02 3.39 16 35 H 0.10 3.37 8.14 -2.38 -0.02 3.35 16 36 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 37 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 Total: -1.00 -75.93 319.57 4.17 -71.76 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.27 Total: 19.09 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 3.23 Total: -26.42 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.30 Total: -58.33 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -1.35 Total: -52.30 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.71 Total: 46.20 kcal Total: -75.93 4.17 -71.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330172790.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.239 kcal (2) G-P(sol) polarization free energy of solvation -75.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds