Wall clock time and date at job start Mon Mar 30 2020 02:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46942 * 2 1 4 4 C 1.50699 * 109.47069 * 120.00398 * 2 1 3 5 5 H 1.07995 * 120.00344 * 120.00455 * 4 2 1 6 6 C 1.37880 * 119.99620 * 299.99824 * 4 2 1 7 7 N 1.31512 * 120.00170 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47130 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.46851 * 120.00012 * 8 6 4 11 11 H 1.48498 * 109.46751 * 239.99776 * 8 6 4 12 12 C 1.50701 * 109.46879 * 239.99722 * 2 1 3 13 13 O 1.20825 * 120.00130 * 239.99739 * 12 2 1 14 14 O 1.34234 * 119.99897 * 60.00313 * 12 2 1 15 15 C 1.45196 * 116.99959 * 179.97438 * 14 12 2 16 16 H 1.08993 * 109.47422 * 329.99879 * 15 14 12 17 17 C 1.52997 * 109.47128 * 90.00244 * 15 14 12 18 18 C 1.50704 * 109.47276 * 209.99958 * 15 14 12 19 19 O 1.21256 * 119.99507 * 345.00237 * 18 15 14 20 20 C 1.47166 * 120.00398 * 164.99949 * 18 15 14 21 21 C 1.39846 * 120.17201 * 179.97438 * 20 18 15 22 22 C 1.37891 * 119.82489 * 179.75025 * 21 20 18 23 23 C 1.38412 * 120.16717 * 0.25583 * 22 21 20 24 24 C 1.38402 * 120.34971 * 359.97438 * 23 22 21 25 25 C 1.37883 * 120.17569 * 0.02562 * 24 23 22 26 26 H 1.08998 * 109.47272 * 299.99909 * 1 2 3 27 27 H 1.09002 * 109.47256 * 60.00143 * 1 2 3 28 28 H 1.09005 * 109.47281 * 179.97438 * 1 2 3 29 29 H 0.97000 * 120.00115 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47409 * 180.02562 * 17 15 14 31 31 H 1.09004 * 109.46921 * 300.00036 * 17 15 14 32 32 H 1.09000 * 109.47654 * 59.99621 * 17 15 14 33 33 H 1.08002 * 120.09198 * 0.03340 * 21 20 18 34 34 H 1.07994 * 119.91964 * 180.28383 * 22 21 20 35 35 H 1.08001 * 119.81783 * 180.02562 * 23 22 21 36 36 H 1.08002 * 119.90871 * 180.02562 * 24 23 22 37 37 H 1.07998 * 120.08969 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.1473 -2.2865 3.6037 10 1 3.1471 -0.1859 4.8160 11 1 1.1677 -1.5867 4.8164 12 6 2.0323 -0.7105 -1.2305 13 8 2.7269 -1.6928 -1.1196 14 8 1.7080 -0.2519 -2.4496 15 6 2.2275 -0.9858 -3.5896 16 1 3.1805 -1.4431 -3.3238 17 6 1.2325 -2.0767 -3.9903 18 6 2.4292 -0.0406 -4.7460 19 8 1.9197 1.0595 -4.7258 20 6 3.2447 -0.4528 -5.8997 21 6 3.4337 0.4213 -6.9749 22 6 4.2034 0.0296 -8.0499 23 6 4.7837 -1.2268 -8.0689 24 6 4.5974 -2.0992 -7.0108 25 6 3.8305 -1.7224 -5.9286 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7087 1.1612 3.4844 30 1 1.6227 -2.6280 -4.8459 31 1 1.0866 -2.7604 -3.1539 32 1 0.2795 -1.6195 -4.2563 33 1 2.9819 1.4021 -6.9613 34 1 4.3542 0.7051 -8.8790 35 1 5.3858 -1.5275 -8.9136 36 1 5.0539 -3.0778 -7.0328 37 1 3.6863 -2.4042 -5.1035 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330231618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:01 Heat of formation + Delta-G solvation = -120.081267 kcal Electronic energy + Delta-G solvation = -20788.879819 eV Core-core repulsion = 17495.647180 eV Total energy + Delta-G solvation = -3293.232640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.88985 -40.82313 -39.20578 -37.53082 -35.95738 -33.95808 -32.62860 -31.97367 -31.44810 -27.32792 -26.67814 -25.42952 -23.95974 -23.33457 -21.63428 -20.85749 -18.84641 -18.57271 -17.89287 -17.74318 -17.11579 -16.73280 -16.60398 -15.98448 -15.80623 -15.30649 -15.07114 -14.81344 -14.51774 -14.31652 -14.06820 -13.60907 -13.52462 -13.32711 -13.05600 -12.87867 -12.76481 -12.63385 -12.52558 -12.32837 -12.07152 -12.05011 -11.87944 -11.18498 -11.12424 -10.75979 -10.55334 -10.01243 -9.99201 -8.21402 -6.35780 -0.45746 0.38478 1.20826 1.35207 1.41992 1.42258 1.54066 1.65386 2.41747 2.78786 2.79944 3.08608 3.64577 3.79506 3.84567 3.95061 3.99396 4.11414 4.22875 4.42658 4.47073 4.57485 4.60388 4.64771 4.83955 4.86194 4.94845 4.98461 5.04343 5.26942 5.33362 5.39117 5.43429 5.46884 5.65683 5.84519 5.91344 6.05679 6.25775 6.71315 6.95266 7.33415 8.85684 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.035145 B = 0.003679 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.504184 B = 7607.966162 C = 7928.260824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.049 3.951 3 H 0.045 0.955 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.968 3.032 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.272 1.272 12 C 0.474 3.526 13 O -0.531 6.531 14 O -0.352 6.352 15 C 0.026 3.974 16 H 0.112 0.888 17 C -0.155 4.155 18 C 0.403 3.597 19 O -0.469 6.469 20 C -0.184 4.184 21 C -0.075 4.075 22 C -0.132 4.132 23 C -0.078 4.078 24 C -0.130 4.130 25 C -0.080 4.080 26 H 0.079 0.921 27 H 0.042 0.958 28 H 0.034 0.966 29 H 0.268 0.732 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.854 -5.986 -22.001 23.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.030 3.970 3 H 0.063 0.937 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.793 3.207 9 H -0.197 1.197 10 H -0.200 1.200 11 H -0.197 1.197 12 C 0.319 3.681 13 O -0.420 6.420 14 O -0.270 6.270 15 C -0.030 4.030 16 H 0.130 0.870 17 C -0.212 4.212 18 C 0.281 3.719 19 O -0.344 6.344 20 C -0.185 4.185 21 C -0.093 4.093 22 C -0.150 4.150 23 C -0.096 4.096 24 C -0.148 4.148 25 C -0.098 4.098 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.143 0.857 34 H 0.173 0.827 35 H 0.180 0.820 36 H 0.177 0.823 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.703 -5.585 -21.855 23.267 hybrid contribution 0.148 -0.114 1.148 1.163 sum 5.851 -5.699 -20.707 22.260 Atomic orbital electron populations 1.21558 0.94379 1.00099 1.01773 1.18706 0.96001 0.96014 0.86303 0.93749 1.21282 1.32684 1.13346 0.90180 0.92053 1.25716 0.94837 0.95644 1.01795 1.69986 1.36705 1.23537 1.24766 0.85347 0.78366 0.78509 0.78500 1.19720 1.19977 1.19747 1.24903 0.75971 0.82684 0.84522 1.90448 1.37201 1.27341 1.87006 1.86731 1.69632 1.55697 1.14891 1.23266 1.01420 0.93920 0.84375 0.87017 1.22124 0.98700 0.96492 1.03910 1.22671 0.76819 0.86072 0.86297 1.90523 1.41617 1.22708 1.79568 1.20175 1.04285 0.97950 0.96110 1.21535 0.96321 0.98957 0.92533 1.21490 0.97276 0.97881 0.98329 1.21926 0.96316 0.92702 0.98653 1.21557 0.98392 1.01687 0.93126 1.21769 0.94659 0.93910 0.99449 0.90278 0.93941 0.94710 0.92232 0.86794 0.91308 0.91144 0.85719 0.82722 0.81989 0.82274 0.84096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.97 8.90 71.98 0.64 -5.33 16 2 C 0.05 2.62 2.74 -12.29 -0.03 2.59 16 3 H 0.04 2.54 8.14 -2.39 -0.02 2.52 16 4 C -0.54 -31.01 8.37 25.60 0.21 -30.80 16 5 H 0.06 3.66 6.76 -2.91 -0.02 3.64 16 6 C 0.02 1.11 5.30 84.66 0.45 1.56 16 7 N -0.91 -51.81 11.32 21.45 0.24 -51.56 16 8 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 C 0.47 23.22 7.22 71.24 0.51 23.73 16 13 O -0.53 -26.95 14.68 21.97 0.32 -26.63 16 14 O -0.35 -15.32 9.36 -45.23 -0.42 -15.74 16 15 C 0.03 0.86 2.16 29.85 0.06 0.93 16 16 H 0.11 3.61 6.35 -2.39 -0.02 3.59 16 17 C -0.16 -4.08 9.33 71.98 0.67 -3.41 16 18 C 0.40 12.80 6.42 28.03 0.18 12.98 16 19 O -0.47 -18.19 16.56 15.38 0.25 -17.93 16 20 C -0.18 -4.40 5.86 -20.15 -0.12 -4.52 16 21 C -0.08 -1.58 9.60 22.58 0.22 -1.36 16 22 C -0.13 -1.83 10.03 22.23 0.22 -1.60 16 23 C -0.08 -0.84 10.04 22.35 0.22 -0.61 16 24 C -0.13 -1.61 10.03 22.22 0.22 -1.39 16 25 C -0.08 -1.44 8.64 22.58 0.19 -1.24 16 26 H 0.08 4.21 6.07 -2.39 -0.01 4.19 16 27 H 0.04 1.90 8.11 -2.39 -0.02 1.88 16 28 H 0.03 1.64 8.14 -2.38 -0.02 1.63 16 29 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.11 2.08 6.63 -2.39 -0.02 2.06 16 31 H 0.07 1.96 8.14 -2.38 -0.02 1.95 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 33 H 0.12 2.77 7.65 -2.91 -0.02 2.75 16 34 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 35 H 0.16 0.64 8.06 -2.91 -0.02 0.61 16 36 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 37 H 0.14 2.27 5.93 -2.91 -0.02 2.25 16 Total: -1.00 -70.88 319.98 7.17 -63.72 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.08 Total: 10.46 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 3.66 Total: -8.48 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.24 Total: -51.56 kcal Atomic # 8 Polarization: -60.45 SS G_CDS: 0.15 Total: -60.30 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -70.88 7.17 -63.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330231618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.363 kcal (2) G-P(sol) polarization free energy of solvation -70.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds