Wall clock time and date at job start Mon Mar 30 2020 02:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46803 * 2 1 4 4 O 1.45196 * 109.46866 * 120.00072 * 2 1 3 5 5 C 1.34227 * 117.00042 * 269.99829 * 4 2 1 6 6 O 1.20828 * 120.00114 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99855 * 180.02562 * 5 4 2 8 8 H 1.08995 * 109.47687 * 299.99876 * 7 5 4 9 9 C 1.53005 * 109.47226 * 60.00429 * 7 5 4 10 10 C 1.50704 * 109.46986 * 180.02562 * 7 5 4 11 11 H 1.07996 * 120.00076 * 0.02562 * 10 7 5 12 12 C 1.37882 * 120.00010 * 180.02562 * 10 7 5 13 13 N 1.31510 * 120.00091 * 359.97438 * 12 10 7 14 14 Si 1.86795 * 119.99807 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47318 * 90.00124 * 14 12 10 16 16 H 1.48505 * 109.46919 * 210.00048 * 14 12 10 17 17 H 1.48504 * 109.47446 * 329.99553 * 14 12 10 18 18 C 1.50698 * 109.47113 * 240.00392 * 2 1 3 19 19 O 1.21252 * 119.99712 * 259.99987 * 18 2 1 20 20 C 1.47166 * 120.00376 * 79.99922 * 18 2 1 21 21 C 1.39847 * 120.17168 * 180.02562 * 20 18 2 22 22 C 1.37886 * 119.82116 * 180.02562 * 21 20 18 23 23 C 1.38406 * 120.17708 * 359.97438 * 22 21 20 24 24 C 1.38403 * 120.34455 * 0.28152 * 23 22 21 25 25 C 1.37892 * 120.17250 * 359.47904 * 24 23 22 26 26 H 1.08997 * 109.47275 * 299.99702 * 1 2 3 27 27 H 1.09008 * 109.47188 * 59.99780 * 1 2 3 28 28 H 1.08997 * 109.46880 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46981 * 180.02562 * 9 7 5 30 30 H 1.08996 * 109.46436 * 299.99982 * 9 7 5 31 31 H 1.09004 * 109.47015 * 59.99699 * 9 7 5 32 32 H 0.97002 * 120.00519 * 180.02562 * 13 12 10 33 33 H 1.07992 * 120.09103 * 359.97438 * 21 20 18 34 34 H 1.08001 * 119.91179 * 179.97438 * 22 21 20 35 35 H 1.08002 * 119.82516 * 179.97438 * 23 22 21 36 36 H 1.08005 * 119.91196 * 179.72500 * 24 23 22 37 37 H 1.07999 * 120.08484 * 180.23018 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0640 2.2811 6 8 1.9974 1.2517 2.2506 7 6 2.7192 -0.5771 3.5491 8 1 2.0105 -1.3373 3.8773 9 6 4.0796 -1.2269 3.2880 10 6 2.8610 0.4729 4.6208 11 1 2.6119 1.5014 4.4054 12 6 3.3086 0.1204 5.8764 13 7 3.6114 -1.1322 6.1389 14 14 3.4836 1.4218 7.2050 15 1 2.2104 1.5313 7.9615 16 1 4.5788 1.0387 8.1319 17 1 3.8009 2.7300 6.5778 18 6 2.0324 -0.7103 -1.2305 19 8 2.4064 -1.8613 -1.1558 20 6 2.0690 -0.0071 -2.5227 21 6 2.5340 -0.6631 -3.6670 22 6 2.5657 0.0029 -4.8739 23 6 2.1384 1.3169 -4.9550 24 6 1.6818 1.9745 -3.8260 25 6 1.6393 1.3207 -2.6127 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 4.4426 -1.6910 4.2051 30 1 3.9766 -1.9864 2.5130 31 1 4.7885 -0.4666 2.9599 32 1 3.9260 -1.3803 7.0223 33 1 2.8681 -1.6881 -3.6053 34 1 2.9249 -0.5021 -5.7584 35 1 2.1661 1.8332 -5.9032 36 1 1.3543 3.0013 -3.8964 37 1 1.2793 1.8342 -1.7334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330231620.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:03 Heat of formation + Delta-G solvation = -120.056914 kcal Electronic energy + Delta-G solvation = -20810.387180 eV Core-core repulsion = 17517.155597 eV Total energy + Delta-G solvation = -3293.231584 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.88789 -40.82025 -39.20885 -37.53171 -35.95899 -33.91517 -32.62632 -31.97270 -31.49200 -27.32355 -26.71382 -25.43118 -23.95316 -23.30942 -21.66359 -20.85188 -18.80565 -18.56386 -17.97902 -17.73167 -17.06951 -16.74613 -16.61333 -15.96040 -15.75783 -15.33085 -15.14682 -14.73781 -14.62742 -14.24747 -13.96932 -13.67059 -13.51245 -13.42582 -13.01687 -12.86089 -12.77867 -12.65192 -12.56513 -12.32241 -12.07485 -12.04807 -11.86957 -11.19969 -11.13884 -10.74721 -10.55205 -10.01414 -9.99418 -8.21202 -6.35586 -0.45992 0.38398 1.18706 1.35356 1.42511 1.43513 1.53737 1.66724 2.41847 2.78348 2.80270 3.08913 3.64081 3.80138 3.83371 3.95429 4.00140 4.10934 4.22941 4.42808 4.47220 4.56706 4.59718 4.63234 4.83895 4.84920 4.93495 4.97366 5.04051 5.26552 5.33014 5.38406 5.43193 5.46716 5.64875 5.83283 5.91232 6.05040 6.25657 6.71145 6.95151 7.33501 8.85741 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.034059 B = 0.003736 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.902026 B = 7491.858143 C = 7804.121116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.026 3.974 3 H 0.112 0.888 4 O -0.352 6.352 5 C 0.474 3.526 6 O -0.531 6.531 7 C 0.050 3.950 8 H 0.049 0.951 9 C -0.121 4.121 10 C -0.538 4.538 11 H 0.061 0.939 12 C 0.020 3.980 13 N -0.912 5.912 14 Si 0.968 3.032 15 H -0.272 1.272 16 H -0.275 1.275 17 H -0.272 1.272 18 C 0.404 3.596 19 O -0.467 6.467 20 C -0.185 4.185 21 C -0.075 4.075 22 C -0.132 4.132 23 C -0.078 4.078 24 C -0.130 4.130 25 C -0.080 4.080 26 H 0.068 0.932 27 H 0.113 0.887 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.030 0.970 32 H 0.269 0.731 33 H 0.125 0.875 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.674 4.977 -22.344 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.030 4.030 3 H 0.130 0.870 4 O -0.270 6.270 5 C 0.319 3.681 6 O -0.420 6.420 7 C 0.031 3.969 8 H 0.067 0.933 9 C -0.179 4.179 10 C -0.576 4.576 11 H 0.080 0.920 12 C -0.180 4.180 13 N -0.550 5.550 14 Si 0.793 3.207 15 H -0.197 1.197 16 H -0.200 1.200 17 H -0.197 1.197 18 C 0.282 3.718 19 O -0.342 6.342 20 C -0.186 4.186 21 C -0.093 4.093 22 C -0.150 4.150 23 C -0.096 4.096 24 C -0.148 4.148 25 C -0.098 4.098 26 H 0.087 0.913 27 H 0.132 0.868 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.143 0.857 34 H 0.173 0.827 35 H 0.180 0.820 36 H 0.177 0.823 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.488 4.597 -22.197 23.108 hybrid contribution 0.123 0.351 1.087 1.149 sum -4.366 4.948 -21.110 22.118 Atomic orbital electron populations 1.22101 0.89807 1.04173 1.05153 1.23276 0.98263 0.98512 0.82934 0.87018 1.86730 1.77301 1.42651 1.20300 1.24904 0.72190 0.85943 0.85053 1.90448 1.49455 1.17808 1.84245 1.18697 0.95893 0.96690 0.85620 0.93282 1.21570 0.96144 0.98587 1.01621 1.21252 1.46111 0.94610 0.95601 0.92029 1.25711 0.94191 0.97808 1.00245 1.69974 1.44588 1.17714 1.22701 0.85400 0.78181 0.78893 0.78267 1.19695 1.19997 1.19720 1.22639 0.73039 0.86951 0.89180 1.90518 1.36769 1.19227 1.87722 1.20188 1.08290 0.96809 0.93282 1.21536 0.95340 1.00256 0.92177 1.21491 1.00353 0.95676 0.97449 1.21924 0.93616 0.94120 0.99934 1.21556 0.99886 1.01644 0.91716 1.21758 0.95786 0.92290 0.99967 0.91280 0.86846 0.91222 0.90121 0.94179 0.95117 0.92216 0.85652 0.82686 0.81984 0.82333 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 9.42 71.98 0.68 -3.45 16 2 C 0.03 0.86 2.17 29.85 0.06 0.93 16 3 H 0.11 3.59 6.04 -2.39 -0.01 3.58 16 4 O -0.35 -15.30 9.40 -45.27 -0.43 -15.73 16 5 C 0.47 23.15 7.22 71.24 0.51 23.67 16 6 O -0.53 -26.85 14.68 21.96 0.32 -26.52 16 7 C 0.05 2.68 2.74 -12.28 -0.03 2.65 16 8 H 0.05 2.75 8.14 -2.39 -0.02 2.73 16 9 C -0.12 -6.14 8.90 71.98 0.64 -5.50 16 10 C -0.54 -30.98 8.38 25.60 0.21 -30.76 16 11 H 0.06 3.66 6.76 -2.91 -0.02 3.64 16 12 C 0.02 1.13 5.30 84.66 0.45 1.58 16 13 N -0.91 -51.72 11.32 21.45 0.24 -51.48 16 14 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 18 C 0.40 12.80 6.38 28.03 0.18 12.98 16 19 O -0.47 -17.97 16.61 15.00 0.25 -17.72 16 20 C -0.18 -4.44 5.87 -20.15 -0.12 -4.56 16 21 C -0.07 -1.57 9.60 22.58 0.22 -1.35 16 22 C -0.13 -1.84 10.03 22.23 0.22 -1.62 16 23 C -0.08 -0.85 10.04 22.35 0.22 -0.63 16 24 C -0.13 -1.66 10.03 22.23 0.22 -1.44 16 25 C -0.08 -1.47 8.87 22.58 0.20 -1.27 16 26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.11 2.10 7.29 -2.38 -0.02 2.09 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.08 4.34 6.07 -2.39 -0.01 4.32 16 30 H 0.04 1.85 8.11 -2.39 -0.02 1.83 16 31 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 33 H 0.13 2.78 7.65 -2.91 -0.02 2.75 16 34 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.16 0.67 8.06 -2.91 -0.02 0.64 16 36 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 37 H 0.14 2.33 6.17 -2.91 -0.02 2.31 16 Total: -1.00 -70.38 320.96 7.17 -63.21 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 1.08 Total: 10.94 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 3.68 Total: -8.78 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.24 Total: -51.48 kcal Atomic # 8 Polarization: -60.12 SS G_CDS: 0.15 Total: -59.98 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -70.38 7.17 -63.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330231620.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.847 kcal (2) G-P(sol) polarization free energy of solvation -70.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds