Wall clock time and date at job start Mon Mar 30 2020 01:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46494 * 125.87155 * 180.11507 * 13 12 11 15 15 C 1.52996 * 109.47251 * 125.32590 * 14 13 12 16 16 O 1.42901 * 109.46882 * 180.02562 * 15 14 13 17 17 C 1.42907 * 113.99741 * 179.97438 * 16 15 14 18 18 C 1.52993 * 109.47210 * 179.97438 * 17 16 15 19 19 F 1.39900 * 109.47075 * 300.00116 * 18 17 16 20 20 F 1.39903 * 109.47200 * 59.99787 * 18 17 16 21 21 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 22 22 N 1.28636 * 110.17920 * 359.73997 * 21 13 12 23 23 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 25 25 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 26 26 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 27 27 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 28 28 H 1.08998 * 109.46924 * 245.32891 * 14 13 12 29 29 H 1.09000 * 109.46687 * 5.32699 * 14 13 12 30 30 H 1.09006 * 109.46841 * 300.00288 * 15 14 13 31 31 H 1.08997 * 109.47339 * 59.99904 * 15 14 13 32 32 H 1.08997 * 109.47030 * 299.99872 * 17 16 15 33 33 H 1.08996 * 109.46869 * 59.99478 * 17 16 15 34 34 H 1.08995 * 109.47596 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6204 -5.4811 -1.0649 13 7 -0.2302 -6.4183 -0.5863 14 6 -0.9699 -7.3959 -1.3883 15 6 -0.6764 -8.8059 -0.8719 16 8 -1.3976 -9.7595 -1.6547 17 6 -1.1919 -11.1155 -1.2533 18 6 -2.0082 -12.0437 -2.1549 19 9 -3.3660 -11.7255 -2.0444 20 9 -1.5982 -11.8831 -3.4828 21 7 -0.2825 -6.2992 0.6943 22 7 0.4867 -5.3442 1.0829 23 1 -0.4850 0.8401 -0.0004 24 1 0.3555 -2.3880 0.0005 25 1 2.6849 -3.7190 -0.8822 26 1 2.6842 -3.7101 0.8977 27 1 0.8827 -5.3105 -2.0986 28 1 -2.0385 -7.1956 -1.3105 29 1 -0.6608 -7.3190 -2.4307 30 1 0.3923 -9.0061 -0.9497 31 1 -0.9855 -8.8828 0.1705 32 1 -0.1339 -11.3633 -1.3390 33 1 -1.5116 -11.2407 -0.2189 34 1 -1.8509 -13.0780 -1.8491 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333125519.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:15 Heat of formation + Delta-G solvation = -32.412412 kcal Electronic energy + Delta-G solvation = -20214.674219 eV Core-core repulsion = 16435.599158 eV Total energy + Delta-G solvation = -3779.075060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.34527 -47.38030 -43.00136 -38.71964 -35.43436 -34.36796 -31.86135 -31.20456 -29.94082 -29.06683 -25.79374 -24.39483 -23.47920 -22.80429 -21.55488 -20.46283 -18.45106 -17.96053 -17.59528 -17.12207 -17.03170 -16.60721 -16.07095 -15.86252 -14.72122 -14.51625 -14.40962 -14.26051 -13.98864 -13.73207 -13.57975 -13.17770 -12.93728 -12.67966 -12.28954 -12.12496 -11.87916 -11.48113 -11.25588 -10.89591 -10.79723 -10.49161 -10.36782 -10.08827 -9.91350 -9.72096 -8.89034 -8.85293 -6.90708 -5.72600 -3.02461 1.75649 2.08004 2.88039 2.97652 3.37574 3.46790 3.51770 3.54048 3.66514 3.93911 4.15253 4.30477 4.53554 4.62042 4.63556 4.72398 4.75440 4.84634 5.03936 5.17162 5.30681 5.46650 5.63647 5.82369 6.18272 6.26845 6.39305 6.64940 6.72626 6.78066 7.72244 8.44617 8.79558 9.56308 10.11941 10.47765 11.50184 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.053042 B = 0.002471 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.756368 B =11330.982579 C =11405.233949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.240 4.240 8 H 0.073 0.927 9 N -0.726 5.726 10 C 0.233 3.767 11 C -0.005 4.005 12 C -0.038 4.038 13 N -0.300 5.300 14 C 0.123 3.877 15 C 0.054 3.946 16 O -0.374 6.374 17 C 0.011 3.989 18 C 0.272 3.728 19 F -0.198 7.198 20 F -0.199 7.199 21 N -0.098 5.098 22 N -0.250 5.250 23 H 0.255 0.745 24 H 0.386 0.614 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.191 0.809 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 -27.124 -5.712 27.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.371 5.371 10 C 0.104 3.896 11 C -0.143 4.143 12 C -0.188 4.188 13 N -0.096 5.096 14 C 0.001 3.999 15 C -0.024 4.024 16 O -0.292 6.292 17 C -0.066 4.066 18 C 0.218 3.782 19 F -0.180 7.180 20 F -0.181 7.181 21 N -0.078 5.078 22 N -0.118 5.118 23 H 0.065 0.935 24 H 0.219 0.781 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.208 0.792 28 H 0.126 0.874 29 H 0.133 0.867 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.737 -27.505 -4.599 28.020 hybrid contribution 0.520 1.206 -0.990 1.645 sum -2.216 -26.299 -5.589 26.977 Atomic orbital electron populations 1.69686 1.05186 1.25669 1.57501 1.24772 0.95534 0.97759 1.02912 0.86146 0.78642 0.83677 0.77450 1.21727 1.21796 1.20667 1.19231 0.91094 0.83811 1.42963 0.90865 1.42319 1.06002 0.99267 1.89525 1.18954 0.90025 0.81358 0.99302 1.22505 1.02585 1.00852 0.88359 1.23461 0.98286 0.94902 1.02189 1.47052 1.31175 1.24490 1.06834 1.21619 0.98250 0.85247 0.94805 1.22658 0.96413 0.87451 0.95862 1.87858 1.69813 1.14166 1.57378 1.23718 1.00815 0.83017 0.99087 1.22021 0.76966 0.99896 0.79312 1.93027 1.34331 1.94765 1.95853 1.93023 1.90023 1.97152 1.37871 1.78239 1.19802 1.17200 0.92512 1.75101 1.06354 1.04044 1.26306 0.93496 0.78088 0.94408 0.94299 0.79198 0.87405 0.86733 0.91946 0.90781 0.89838 0.89681 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -19.14 5.59 -61.09 -0.34 -19.48 16 10 C 0.23 4.89 6.82 -5.19 -0.04 4.86 16 11 C -0.01 -0.10 6.61 -82.78 -0.55 -0.65 16 12 C -0.04 -0.57 11.50 -17.04 -0.20 -0.77 16 13 N -0.30 -4.17 3.44 -61.27 -0.21 -4.38 16 14 C 0.12 1.15 6.82 -4.05 -0.03 1.12 16 15 C 0.05 0.44 6.06 37.16 0.23 0.67 16 16 O -0.37 -3.19 10.23 -35.23 -0.36 -3.55 16 17 C 0.01 0.06 6.16 37.15 0.23 0.29 16 18 C 0.27 1.46 5.63 37.15 0.21 1.67 16 19 F -0.20 -1.70 17.28 2.25 0.04 -1.66 16 20 F -0.20 -1.66 17.28 2.25 0.04 -1.62 16 21 N -0.10 -1.71 12.91 60.35 0.78 -0.93 16 22 N -0.25 -5.08 12.41 33.29 0.41 -4.67 16 23 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.39 10.98 7.66 -40.82 -0.31 10.67 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.19 2.17 8.06 -52.49 -0.42 1.75 16 28 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.11 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.13 0.12 8.14 -51.93 -0.42 -0.30 16 LS Contribution 313.22 15.07 4.72 4.72 Total: -1.00 -36.12 313.22 -3.69 -39.81 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.08 Total: 2.64 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -0.39 Total: -0.27 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 1.36 Total: -57.70 kcal Atomic # 8 Polarization: -3.19 SS G_CDS: -0.36 Total: -3.55 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.08 Total: -3.27 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.12 -3.69 -39.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333125519.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.402 kcal (2) G-P(sol) polarization free energy of solvation -36.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds