Wall clock time and date at job start Mon Mar 30 2020 01:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46494 * 125.87155 * 180.11507 * 13 12 11 15 15 C 1.52996 * 109.47251 * 125.32590 * 14 13 12 16 16 O 1.42901 * 109.46882 * 180.02562 * 15 14 13 17 17 C 1.42907 * 113.99741 * 179.97438 * 16 15 14 18 18 C 1.52993 * 109.47210 * 179.97438 * 17 16 15 19 19 F 1.39900 * 109.47075 * 300.00116 * 18 17 16 20 20 F 1.39903 * 109.47200 * 59.99787 * 18 17 16 21 21 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 22 22 N 1.28636 * 110.17920 * 359.73997 * 21 13 12 23 23 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 25 25 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 26 26 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 27 27 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 28 28 H 1.08998 * 109.46924 * 245.32891 * 14 13 12 29 29 H 1.09000 * 109.46687 * 5.32699 * 14 13 12 30 30 H 1.09006 * 109.46841 * 300.00288 * 15 14 13 31 31 H 1.08997 * 109.47339 * 59.99904 * 15 14 13 32 32 H 1.08997 * 109.47030 * 299.99872 * 17 16 15 33 33 H 1.08996 * 109.46869 * 59.99478 * 17 16 15 34 34 H 1.08995 * 109.47596 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6204 -5.4811 -1.0649 13 7 -0.2302 -6.4183 -0.5863 14 6 -0.9699 -7.3959 -1.3883 15 6 -0.6764 -8.8059 -0.8719 16 8 -1.3976 -9.7595 -1.6547 17 6 -1.1919 -11.1155 -1.2533 18 6 -2.0082 -12.0437 -2.1549 19 9 -3.3660 -11.7255 -2.0444 20 9 -1.5982 -11.8831 -3.4828 21 7 -0.2825 -6.2992 0.6943 22 7 0.4867 -5.3442 1.0829 23 1 -0.4850 0.8401 -0.0004 24 1 0.3555 -2.3880 0.0005 25 1 2.6849 -3.7190 -0.8822 26 1 2.6842 -3.7101 0.8977 27 1 0.8827 -5.3105 -2.0986 28 1 -2.0385 -7.1956 -1.3105 29 1 -0.6608 -7.3190 -2.4307 30 1 0.3923 -9.0061 -0.9497 31 1 -0.9855 -8.8828 0.1705 32 1 -0.1339 -11.3633 -1.3390 33 1 -1.5116 -11.2407 -0.2189 34 1 -1.8509 -13.0780 -1.8491 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333125519.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:15 Heat of formation + Delta-G solvation = -59.666384 kcal Electronic energy + Delta-G solvation = -20215.856040 eV Core-core repulsion = 16435.599158 eV Total energy + Delta-G solvation = -3780.256881 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.84886 -47.91092 -44.26783 -39.30367 -36.96063 -35.81003 -33.67142 -31.92443 -31.55043 -29.84893 -27.58317 -25.28719 -24.73192 -23.88955 -22.78676 -21.74977 -19.33918 -18.98264 -18.45362 -18.23241 -17.80101 -17.31656 -16.86713 -16.80915 -16.46720 -15.86644 -15.51974 -15.19707 -14.94371 -14.84794 -14.53456 -14.29153 -14.25498 -13.64733 -13.53209 -13.05189 -12.86669 -12.79402 -12.71093 -12.46406 -12.08406 -11.90995 -11.86521 -11.78980 -11.10577 -10.94877 -10.90494 -10.23138 -9.01417 -7.92740 -5.23254 0.57362 1.17133 1.44569 1.51872 1.53198 1.61998 2.40008 2.60364 2.94987 3.31420 3.37094 3.41262 3.57185 3.60551 3.69450 3.97639 4.10547 4.13643 4.21857 4.25614 4.26980 4.31544 4.48496 4.52348 4.66552 4.88758 5.13722 5.18339 5.51895 5.58311 5.80211 6.27098 7.33731 7.48195 8.05293 8.30793 9.31351 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.053042 B = 0.002471 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.756368 B =11330.982579 C =11405.233949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.080 4.080 3 Si 0.980 3.020 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.267 1.267 7 C -0.243 4.243 8 H 0.086 0.914 9 N -0.740 5.740 10 C 0.235 3.765 11 C -0.039 4.039 12 C -0.013 4.013 13 N -0.284 5.284 14 C 0.113 3.887 15 C 0.062 3.938 16 O -0.394 6.394 17 C 0.003 3.997 18 C 0.262 3.738 19 F -0.220 7.220 20 F -0.219 7.219 21 N -0.111 5.111 22 N -0.295 5.295 23 H 0.250 0.750 24 H 0.370 0.630 25 H 0.065 0.935 26 H 0.030 0.970 27 H 0.231 0.769 28 H 0.111 0.889 29 H 0.145 0.855 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.048 -28.465 -6.882 29.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.272 4.272 3 Si 0.809 3.191 4 H -0.209 1.209 5 H -0.226 1.226 6 H -0.192 1.192 7 C -0.374 4.374 8 H 0.104 0.896 9 N -0.383 5.383 10 C 0.108 3.892 11 C -0.177 4.177 12 C -0.165 4.165 13 N -0.079 5.079 14 C -0.007 4.007 15 C -0.015 4.015 16 O -0.313 6.313 17 C -0.074 4.074 18 C 0.209 3.791 19 F -0.202 7.202 20 F -0.200 7.200 21 N -0.090 5.090 22 N -0.162 5.162 23 H 0.059 0.941 24 H 0.201 0.799 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.247 0.753 28 H 0.129 0.871 29 H 0.163 0.837 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -1.664 -28.911 -5.766 29.527 hybrid contribution 0.175 1.439 -0.667 1.596 sum -1.489 -27.472 -6.433 28.254 Atomic orbital electron populations 1.69863 1.06934 1.26083 1.59625 1.25668 0.96397 1.01444 1.03655 0.85041 0.77602 0.78919 0.77578 1.20946 1.22622 1.19152 1.19712 0.91836 0.84770 1.41076 0.89645 1.42541 1.05493 1.00768 1.89514 1.18986 0.90336 0.80141 0.99770 1.22322 1.04016 1.01683 0.89682 1.23909 0.96447 0.93263 1.02838 1.47352 1.30132 1.24354 1.06109 1.22043 0.98055 0.84970 0.95619 1.22496 0.96855 0.86912 0.95266 1.87824 1.70138 1.15626 1.57719 1.24020 1.02236 0.81295 0.99863 1.22696 0.75629 1.02460 0.78291 1.92980 1.36209 1.95116 1.95880 1.92979 1.90123 1.97388 1.39529 1.78139 1.19760 1.16890 0.94258 1.75033 1.07789 1.05479 1.27942 0.94092 0.79867 0.91721 0.95240 0.75274 0.87053 0.83718 0.91047 0.91636 0.87688 0.88147 0.80786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.54 13.06 21.65 0.28 -61.26 16 2 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 3 Si 0.98 46.59 29.55 68.60 2.03 48.62 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.24 -13.69 9.99 84.03 0.84 -12.85 16 8 H 0.09 4.50 7.83 -2.91 -0.02 4.48 16 9 N -0.74 -39.16 5.59 -347.18 -1.94 -41.11 16 10 C 0.24 9.77 6.82 85.63 0.58 10.35 16 11 C -0.04 -1.44 6.61 41.60 0.28 -1.17 16 12 C -0.01 -0.36 11.50 83.49 0.96 0.60 16 13 N -0.28 -7.38 3.44 -347.75 -1.20 -8.57 16 14 C 0.11 1.85 6.82 86.38 0.59 2.44 16 15 C 0.06 0.90 6.06 71.98 0.44 1.34 16 16 O -0.39 -5.95 10.23 -148.98 -1.52 -7.47 16 17 C 0.00 0.02 6.16 71.98 0.44 0.47 16 18 C 0.26 2.28 5.63 71.98 0.41 2.68 16 19 F -0.22 -3.53 17.28 44.97 0.78 -2.75 16 20 F -0.22 -3.32 17.28 44.97 0.78 -2.54 16 21 N -0.11 -3.82 12.91 37.02 0.48 -3.34 16 22 N -0.30 -12.07 12.41 -48.60 -0.60 -12.67 16 23 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 24 H 0.37 21.50 7.66 -92.71 -0.71 20.79 16 25 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 26 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.23 4.29 8.06 -2.91 -0.02 4.27 16 28 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.14 1.53 8.07 -2.39 -0.02 1.51 16 30 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 32 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.18 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: -1.00 -79.74 313.22 4.50 -75.25 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.42 Total: 16.21 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 5.00 Total: -0.36 kcal Atomic # 7 Polarization: -123.97 SS G_CDS: -2.98 Total: -126.95 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -1.52 Total: -7.47 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 1.55 Total: -5.29 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -79.74 4.50 -75.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333125519.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.580 kcal (2) G-P(sol) polarization free energy of solvation -79.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds