Wall clock time and date at job start Mon Mar 30 2020 02:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47151 * 2 1 4 4 C 1.52992 * 109.47223 * 239.99631 * 2 1 3 5 5 N 1.46502 * 109.47465 * 59.99911 * 4 2 1 6 6 C 1.35313 * 125.86779 * 125.32097 * 5 4 2 7 7 C 1.35349 * 106.17218 * 180.12213 * 6 5 4 8 8 C 1.50697 * 126.75364 * 179.85517 * 7 6 5 9 9 N 1.46499 * 109.47276 * 94.71254 * 8 7 6 10 10 C 1.36935 * 119.99938 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00518 * 359.72965 * 10 9 8 12 12 C 1.38817 * 119.99990 * 179.97438 * 10 9 8 13 13 N 1.31617 * 119.99869 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99909 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47028 * 60.00888 * 14 12 10 16 16 H 1.48503 * 109.46851 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47412 * 300.00497 * 14 12 10 18 18 N 1.33774 * 106.49914 * 359.59715 * 7 6 5 19 19 N 1.28635 * 108.88067 * 0.25663 * 18 7 6 20 20 C 1.53005 * 109.47140 * 119.99677 * 2 1 3 21 21 F 1.39896 * 109.47061 * 300.00143 * 20 2 1 22 22 F 1.39904 * 109.46940 * 60.00050 * 20 2 1 23 23 H 1.09008 * 109.47084 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47545 * 300.00287 * 1 2 3 25 25 H 1.08997 * 109.47705 * 60.00584 * 1 2 3 26 26 H 0.96696 * 113.99954 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47470 * 299.99529 * 4 2 1 28 28 H 1.09003 * 109.47475 * 180.02562 * 4 2 1 29 29 H 1.08001 * 126.91913 * 359.97438 * 6 5 4 30 30 H 1.09004 * 109.47205 * 334.71228 * 8 7 6 31 31 H 1.09005 * 109.47240 * 214.71438 * 8 7 6 32 32 H 0.96999 * 119.99984 * 0.02562 * 9 8 7 33 33 H 0.96996 * 119.99743 * 179.97438 * 13 12 10 34 34 H 1.09005 * 109.47158 * 180.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7213 -1.2491 5 7 1.5516 -0.0308 -2.4454 6 6 2.3167 0.4367 -3.4588 7 6 1.4640 1.0007 -4.3458 8 6 1.8277 1.6676 -5.6473 9 7 1.7158 0.6987 -6.7405 10 6 1.9996 1.0797 -8.0248 11 1 2.3016 2.0956 -8.2325 12 6 1.8941 0.1615 -9.0605 13 7 1.5209 -1.0752 -8.8082 14 14 2.2805 0.6814 -10.8126 15 1 3.6873 1.1503 -10.8909 16 1 2.0922 -0.4750 -11.7250 17 1 1.3687 1.7823 -11.2148 18 7 0.2344 0.8446 -3.8426 19 7 0.3206 0.2298 -2.7160 20 6 2.0399 -0.7212 1.2493 21 9 1.5736 -0.0617 2.3915 22 9 1.5736 -2.0402 1.2494 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 2.9702 1.4236 -0.0004 27 1 1.6767 -1.7490 -1.2491 28 1 3.1300 -0.7217 -1.2489 29 1 3.3918 0.3748 -3.5420 30 1 2.8517 2.0370 -5.5926 31 1 1.1499 2.5015 -5.8301 32 1 1.4407 -0.2127 -6.5545 33 1 1.4468 -1.7166 -9.5319 34 1 3.1300 -0.7208 1.2496 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337616475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:41 Heat of formation + Delta-G solvation = -28.944612 kcal Electronic energy + Delta-G solvation = -21393.193612 eV Core-core repulsion = 17614.268927 eV Total energy + Delta-G solvation = -3778.924685 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.52865 -47.50678 -43.04743 -38.75455 -35.17100 -34.19630 -32.03671 -31.84414 -29.88241 -27.88806 -26.90396 -25.73545 -22.82658 -22.16299 -21.36763 -20.59618 -18.70470 -18.07824 -17.71652 -17.23836 -16.86733 -16.55481 -15.63277 -15.09216 -14.67554 -14.56181 -14.36136 -13.84271 -13.78448 -13.71257 -13.18785 -12.99423 -12.95932 -12.83292 -12.50459 -12.39959 -11.81927 -11.56914 -11.19099 -10.86970 -10.80102 -10.66810 -10.46008 -10.12044 -9.85698 -9.69290 -8.87857 -8.83708 -6.91622 -5.73568 -3.03288 1.75853 2.16894 2.89944 3.07562 3.36381 3.46594 3.49035 3.50993 3.52216 3.65158 3.96003 4.10004 4.43962 4.61364 4.66448 4.74161 4.86520 5.22509 5.45830 5.46950 5.54843 5.62737 5.79145 6.08949 6.17801 6.41170 6.65701 6.69177 6.78247 6.89815 7.71071 8.43722 8.81087 9.55434 10.11089 10.47053 11.49150 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.049223 B = 0.003265 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.708756 B = 8574.604267 C = 8720.566774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.078 3.922 3 O -0.525 6.525 4 C 0.093 3.907 5 N -0.292 5.292 6 C -0.042 4.042 7 C -0.002 4.002 8 C 0.232 3.768 9 N -0.726 5.726 10 C -0.241 4.241 11 H 0.073 0.927 12 C -0.012 4.012 13 N -0.933 5.933 14 Si 0.910 3.090 15 H -0.286 1.286 16 H -0.291 1.291 17 H -0.285 1.285 18 N -0.252 5.252 19 N -0.089 5.089 20 C 0.245 3.755 21 F -0.190 7.190 22 F -0.194 7.194 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.110 0.890 26 H 0.379 0.621 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.189 0.811 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.385 0.615 33 H 0.256 0.744 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.788 -0.001 22.895 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 O -0.330 6.330 4 C -0.031 4.031 5 N -0.086 5.086 6 C -0.192 4.192 7 C -0.140 4.140 8 C 0.103 3.897 9 N -0.371 5.371 10 C -0.372 4.372 11 H 0.091 0.909 12 C -0.209 4.209 13 N -0.581 5.581 14 Si 0.741 3.259 15 H -0.212 1.212 16 H -0.217 1.217 17 H -0.212 1.212 18 N -0.119 5.119 19 N -0.068 5.068 20 C 0.190 3.810 21 F -0.171 7.171 22 F -0.176 7.176 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.129 0.871 26 H 0.227 0.773 27 H 0.134 0.866 28 H 0.130 0.870 29 H 0.206 0.794 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.219 0.781 33 H 0.065 0.935 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.714 0.083 23.253 23.548 hybrid contribution 1.945 -0.406 -0.989 2.219 sum 5.659 -0.323 22.264 22.974 Atomic orbital electron populations 1.22141 0.88893 1.04448 1.06314 1.22543 0.99524 0.83833 0.90673 1.86844 1.26956 1.22829 1.96390 1.22576 1.00968 0.97721 0.81798 1.46800 1.06181 1.39604 1.15979 1.23365 0.99999 1.05127 0.90682 1.22452 0.88796 1.03203 0.99501 1.18952 0.97868 0.91923 0.80925 1.42299 1.82447 1.10124 1.02208 1.19194 1.38421 0.95827 0.83779 0.90926 1.24758 1.02264 0.95782 0.98055 1.69670 1.53714 1.03194 1.31504 0.86230 0.78043 0.77157 0.84510 1.21238 1.21737 1.21171 1.75121 1.22237 1.12891 1.01640 1.78081 0.99940 1.16544 1.12202 1.22498 0.98212 0.75684 0.84566 1.93026 1.90950 1.80767 1.52322 1.93022 1.91009 1.36843 1.96692 0.90066 0.91013 0.87124 0.77289 0.86579 0.86954 0.79441 0.94490 0.94299 0.78115 0.93460 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.17 37.15 0.30 -1.40 16 2 C 0.08 0.61 0.83 -90.63 -0.08 0.54 16 3 O -0.52 -4.45 12.79 -35.23 -0.45 -4.90 16 4 C 0.09 0.71 5.53 -4.04 -0.02 0.69 16 5 N -0.29 -3.83 3.31 -61.26 -0.20 -4.03 16 6 C -0.04 -0.60 11.50 -17.05 -0.20 -0.79 16 7 C 0.00 -0.03 6.61 -82.78 -0.55 -0.58 16 8 C 0.23 4.86 6.82 -5.20 -0.04 4.82 16 9 N -0.73 -18.96 5.59 -61.08 -0.34 -19.30 16 10 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 11 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 12 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 13 N -0.93 -28.69 13.06 55.49 0.72 -27.96 16 14 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 N -0.25 -5.07 12.41 33.29 0.41 -4.66 16 19 N -0.09 -1.51 9.95 60.35 0.60 -0.91 16 20 C 0.25 1.50 4.52 37.16 0.17 1.67 16 21 F -0.19 -1.68 16.76 2.25 0.04 -1.64 16 22 F -0.19 -1.50 16.30 2.25 0.04 -1.47 16 23 H 0.08 0.79 7.80 -51.92 -0.41 0.38 16 24 H 0.07 0.75 7.80 -51.93 -0.41 0.35 16 25 H 0.11 1.49 5.32 -51.93 -0.28 1.21 16 26 H 0.38 1.33 9.04 45.56 0.41 1.74 16 27 H 0.12 0.83 7.80 -51.93 -0.41 0.43 16 28 H 0.11 0.39 8.07 -51.93 -0.42 -0.03 16 29 H 0.19 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.39 10.85 7.66 -40.82 -0.31 10.54 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 34 H 0.11 0.22 8.14 -51.93 -0.42 -0.21 16 LS Contribution 302.63 15.07 4.56 4.56 Total: -1.00 -36.39 302.63 -3.34 -39.73 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -3.05 Total: 5.60 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.65 Total: -2.46 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 1.19 Total: -56.86 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.45 Total: -4.90 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.07 Total: -3.11 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -36.39 -3.34 -39.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337616475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.786 kcal (2) G-P(sol) polarization free energy of solvation -36.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds