Wall clock time and date at job start Mon Mar 30 2020 02:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47151 * 2 1 4 4 C 1.52992 * 109.47223 * 239.99631 * 2 1 3 5 5 N 1.46502 * 109.47465 * 59.99911 * 4 2 1 6 6 C 1.35313 * 125.86779 * 125.32097 * 5 4 2 7 7 C 1.35349 * 106.17218 * 180.12213 * 6 5 4 8 8 C 1.50697 * 126.75364 * 179.85517 * 7 6 5 9 9 N 1.46499 * 109.47276 * 94.71254 * 8 7 6 10 10 C 1.36935 * 119.99938 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00518 * 359.72965 * 10 9 8 12 12 C 1.38817 * 119.99990 * 179.97438 * 10 9 8 13 13 N 1.31617 * 119.99869 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99909 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47028 * 60.00888 * 14 12 10 16 16 H 1.48503 * 109.46851 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47412 * 300.00497 * 14 12 10 18 18 N 1.33774 * 106.49914 * 359.59715 * 7 6 5 19 19 N 1.28635 * 108.88067 * 0.25663 * 18 7 6 20 20 C 1.53005 * 109.47140 * 119.99677 * 2 1 3 21 21 F 1.39896 * 109.47061 * 300.00143 * 20 2 1 22 22 F 1.39904 * 109.46940 * 60.00050 * 20 2 1 23 23 H 1.09008 * 109.47084 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47545 * 300.00287 * 1 2 3 25 25 H 1.08997 * 109.47705 * 60.00584 * 1 2 3 26 26 H 0.96696 * 113.99954 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47470 * 299.99529 * 4 2 1 28 28 H 1.09003 * 109.47475 * 180.02562 * 4 2 1 29 29 H 1.08001 * 126.91913 * 359.97438 * 6 5 4 30 30 H 1.09004 * 109.47205 * 334.71228 * 8 7 6 31 31 H 1.09005 * 109.47240 * 214.71438 * 8 7 6 32 32 H 0.96999 * 119.99984 * 0.02562 * 9 8 7 33 33 H 0.96996 * 119.99743 * 179.97438 * 13 12 10 34 34 H 1.09005 * 109.47158 * 180.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7213 -1.2491 5 7 1.5516 -0.0308 -2.4454 6 6 2.3167 0.4367 -3.4588 7 6 1.4640 1.0007 -4.3458 8 6 1.8277 1.6676 -5.6473 9 7 1.7158 0.6987 -6.7405 10 6 1.9996 1.0797 -8.0248 11 1 2.3016 2.0956 -8.2325 12 6 1.8941 0.1615 -9.0605 13 7 1.5209 -1.0752 -8.8082 14 14 2.2805 0.6814 -10.8126 15 1 3.6873 1.1503 -10.8909 16 1 2.0922 -0.4750 -11.7250 17 1 1.3687 1.7823 -11.2148 18 7 0.2344 0.8446 -3.8426 19 7 0.3206 0.2298 -2.7160 20 6 2.0399 -0.7212 1.2493 21 9 1.5736 -0.0617 2.3915 22 9 1.5736 -2.0402 1.2494 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 2.9702 1.4236 -0.0004 27 1 1.6767 -1.7490 -1.2491 28 1 3.1300 -0.7217 -1.2489 29 1 3.3918 0.3748 -3.5420 30 1 2.8517 2.0370 -5.5926 31 1 1.1499 2.5015 -5.8301 32 1 1.4407 -0.2127 -6.5545 33 1 1.4468 -1.7166 -9.5319 34 1 3.1300 -0.7208 1.2496 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337616475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:41 Heat of formation + Delta-G solvation = -59.006952 kcal Electronic energy + Delta-G solvation = -21394.497213 eV Core-core repulsion = 17614.268927 eV Total energy + Delta-G solvation = -3780.228286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.05656 -48.05502 -44.23203 -39.41814 -36.82176 -35.38698 -33.63809 -32.86333 -31.52816 -28.69515 -27.82584 -27.22113 -24.74552 -23.16008 -22.41124 -21.64103 -19.52910 -19.17869 -18.58760 -18.25547 -17.72748 -17.47113 -16.70807 -16.29095 -15.90356 -15.81253 -15.44522 -15.07298 -14.91419 -14.45372 -14.40171 -14.24771 -13.78716 -13.74670 -13.59473 -13.27094 -13.11420 -12.93881 -12.71086 -12.27024 -12.21753 -12.06185 -11.86088 -11.70524 -11.44892 -10.93693 -10.80412 -10.13162 -9.00468 -7.92044 -5.22336 0.65326 1.31201 1.48927 1.54290 1.55394 1.61419 2.52681 2.60983 2.81645 3.04278 3.15420 3.39489 3.40085 3.48738 3.72634 3.94294 4.01880 4.17084 4.23574 4.23738 4.31112 4.60846 4.68323 4.69717 4.89439 5.09165 5.20287 5.32422 5.52072 5.72323 6.27681 6.56384 7.34586 7.56330 8.06377 8.32237 9.31710 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.049223 B = 0.003265 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.708756 B = 8574.604267 C = 8720.566774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.084 3.916 3 O -0.547 6.547 4 C 0.080 3.920 5 N -0.276 5.276 6 C -0.013 4.013 7 C -0.041 4.041 8 C 0.236 3.764 9 N -0.739 5.739 10 C -0.246 4.246 11 H 0.084 0.916 12 C -0.076 4.076 13 N -0.973 5.973 14 Si 0.979 3.021 15 H -0.271 1.271 16 H -0.298 1.298 17 H -0.280 1.280 18 N -0.305 5.305 19 N -0.104 5.104 20 C 0.247 3.753 21 F -0.208 7.208 22 F -0.205 7.205 23 H 0.082 0.918 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.402 0.598 27 H 0.124 0.876 28 H 0.170 0.830 29 H 0.235 0.765 30 H 0.064 0.936 31 H 0.024 0.976 32 H 0.371 0.629 33 H 0.251 0.749 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.591 0.035 23.978 25.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.041 3.959 3 O -0.356 6.356 4 C -0.041 4.041 5 N -0.069 5.069 6 C -0.164 4.164 7 C -0.180 4.180 8 C 0.108 3.892 9 N -0.382 5.382 10 C -0.377 4.377 11 H 0.102 0.898 12 C -0.268 4.268 13 N -0.624 5.624 14 Si 0.807 3.193 15 H -0.196 1.196 16 H -0.224 1.224 17 H -0.206 1.206 18 N -0.171 5.171 19 N -0.083 5.083 20 C 0.193 3.807 21 F -0.189 7.189 22 F -0.186 7.186 23 H 0.101 0.899 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.254 0.746 27 H 0.142 0.858 28 H 0.188 0.812 29 H 0.251 0.749 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.202 0.798 33 H 0.059 0.941 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.531 0.156 24.392 25.252 hybrid contribution 1.073 -0.388 -1.161 1.628 sum 7.604 -0.232 23.232 24.445 Atomic orbital electron populations 1.22091 0.91931 1.03989 1.04341 1.22354 0.97432 0.84178 0.91968 1.86812 1.29315 1.22980 1.96489 1.23187 1.04348 0.97260 0.79278 1.47189 1.04964 1.37925 1.16872 1.23858 1.01352 1.02115 0.89107 1.22279 0.89700 1.06009 0.99986 1.18955 0.98736 0.90619 0.80882 1.42510 1.82312 1.10326 1.03030 1.19677 1.36932 0.96196 0.84932 0.89819 1.25633 1.03054 0.95878 1.02280 1.69847 1.55758 1.04394 1.32354 0.85133 0.78459 0.76447 0.79230 1.19616 1.22408 1.20638 1.75049 1.23904 1.14908 1.03267 1.78040 1.01975 1.16917 1.11353 1.22878 1.00809 0.74433 0.82600 1.92993 1.91456 1.81192 1.53260 1.93007 1.91438 1.37549 1.96614 0.89881 0.91785 0.90188 0.74630 0.85760 0.81232 0.74912 0.91781 0.95820 0.79831 0.94075 0.81100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.49 8.17 71.98 0.59 -2.90 16 2 C 0.08 1.10 0.83 -10.80 -0.01 1.09 16 3 O -0.55 -7.70 12.79 -148.98 -1.90 -9.61 16 4 C 0.08 0.91 5.53 86.38 0.48 1.39 16 5 N -0.28 -6.60 3.31 -347.73 -1.15 -7.75 16 6 C -0.01 -0.33 11.50 83.49 0.96 0.63 16 7 C -0.04 -1.53 6.61 41.59 0.28 -1.25 16 8 C 0.24 9.81 6.82 85.63 0.58 10.40 16 9 N -0.74 -38.88 5.59 -347.17 -1.94 -40.82 16 10 C -0.25 -13.85 9.99 84.04 0.84 -13.01 16 11 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 12 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 13 N -0.97 -60.83 13.06 21.65 0.28 -60.55 16 14 Si 0.98 46.23 29.55 68.60 2.03 48.25 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 16 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 N -0.30 -12.57 12.41 -48.60 -0.60 -13.18 16 19 N -0.10 -3.54 9.95 37.02 0.37 -3.17 16 20 C 0.25 2.13 4.52 71.98 0.33 2.46 16 21 F -0.21 -3.23 16.76 44.97 0.75 -2.47 16 22 F -0.20 -2.59 16.30 44.97 0.73 -1.86 16 23 H 0.08 1.63 7.80 -2.38 -0.02 1.61 16 24 H 0.06 1.38 7.80 -2.38 -0.02 1.37 16 25 H 0.08 2.23 5.32 -2.39 -0.01 2.22 16 26 H 0.40 1.05 9.04 -74.06 -0.67 0.38 16 27 H 0.12 1.34 7.80 -2.39 -0.02 1.32 16 28 H 0.17 0.02 8.07 -2.39 -0.02 0.00 16 29 H 0.23 3.60 8.06 -2.91 -0.02 3.58 16 30 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.37 21.32 7.66 -92.71 -0.71 20.61 16 33 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 34 H 0.17 -0.39 8.14 -2.38 -0.02 -0.41 16 Total: -1.00 -83.35 302.63 2.85 -80.50 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -0.22 Total: 15.83 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 4.51 Total: -5.18 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -3.04 Total: -125.46 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -1.90 Total: -9.61 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 1.49 Total: -4.33 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -83.35 2.85 -80.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337616475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.493 kcal (2) G-P(sol) polarization free energy of solvation -83.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds