Wall clock time and date at job start Mon Mar 30 2020 01:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50695 * 119.99605 * 2 1 4 4 C 1.50694 * 120.00280 * 179.97438 * 2 1 3 5 5 C 1.53004 * 109.46637 * 94.99823 * 4 2 1 6 6 C 1.50705 * 109.47083 * 179.97438 * 5 4 2 7 7 O 1.20835 * 119.99757 * 0.02562 * 6 5 4 8 8 O 1.34254 * 120.00184 * 179.97438 * 6 5 4 9 9 C 1.35922 * 117.00375 * 185.33870 * 8 6 5 10 10 C 1.38817 * 120.02463 * 246.47514 * 9 8 6 11 11 C 1.38194 * 120.08482 * 179.74189 * 10 9 8 12 12 C 1.38153 * 120.12051 * 0.50611 * 11 10 9 13 13 C 1.38899 * 120.04028 * 359.76957 * 12 11 10 14 14 O 1.35753 * 120.04104 * 179.97438 * 13 12 11 15 15 C 1.34826 * 116.99922 * 185.96753 * 14 13 12 16 16 H 1.08001 * 120.00401 * 354.89598 * 15 14 13 17 17 C 1.38658 * 119.99888 * 174.90274 * 15 14 13 18 18 N 1.31551 * 119.99982 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99943 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47163 * 59.99845 * 19 17 15 21 21 H 1.48501 * 109.46937 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46788 * 299.99763 * 19 17 15 23 23 C 1.38577 * 120.01655 * 66.74292 * 9 8 6 24 24 H 1.07999 * 120.00140 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99188 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47038 * 269.99832 * 3 2 1 27 27 H 1.09002 * 109.47754 * 29.99630 * 3 2 1 28 28 H 1.08997 * 109.47226 * 149.99867 * 3 2 1 29 29 H 1.09006 * 109.47191 * 335.00780 * 4 2 1 30 30 H 1.08993 * 109.47518 * 215.00007 * 4 2 1 31 31 H 1.09001 * 109.46785 * 60.01001 * 5 4 2 32 32 H 1.08993 * 109.47317 * 300.00307 * 5 4 2 33 33 H 1.07998 * 119.96094 * 359.97438 * 10 9 8 34 34 H 1.07996 * 119.94582 * 180.22992 * 11 10 9 35 35 H 1.08004 * 119.98229 * 179.74841 * 12 11 10 36 36 H 0.97000 * 120.00267 * 180.02562 * 18 17 15 37 37 H 1.07996 * 120.06201 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3050 0.0006 5 6 2.4274 -1.6844 -1.4363 6 6 3.1816 -2.9892 -1.4358 7 8 3.4047 -3.5576 -0.3931 8 8 3.6046 -3.5205 -2.5939 9 6 4.1792 -4.7509 -2.5349 10 6 5.5262 -4.9034 -2.8341 11 6 6.1129 -6.1530 -2.7694 12 6 5.3588 -7.2556 -2.4170 13 6 4.0094 -7.1097 -2.1222 14 8 3.2682 -8.1932 -1.7765 15 6 1.9420 -8.0043 -1.6239 16 1 1.5265 -7.0099 -1.6947 17 6 1.1116 -9.0866 -1.3757 18 7 1.6177 -10.2977 -1.2887 19 14 -0.7258 -8.8247 -1.1634 20 1 -1.2854 -8.2188 -2.3983 21 1 -1.3859 -10.1306 -0.9103 22 1 -0.9667 -7.9165 -0.0134 23 6 3.4195 -5.8546 -2.1816 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 2.2451 1.6197 -1.0276 27 1 1.4744 2.0648 0.5138 28 1 3.0159 1.1749 0.5138 29 1 1.4387 -2.0853 0.4351 30 1 2.9743 -1.1985 0.5899 31 1 3.0524 -0.9042 -1.8709 32 1 1.5168 -1.7909 -2.0257 33 1 6.1172 -4.0440 -3.1141 34 1 7.1619 -6.2685 -2.9989 35 1 5.8188 -8.2317 -2.3711 36 1 1.0368 -11.0549 -1.1155 37 1 2.3706 -5.7384 -1.9523 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338199337.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:28 Heat of formation + Delta-G solvation = -70.624203 kcal Electronic energy + Delta-G solvation = -20489.897561 eV Core-core repulsion = 17198.809540 eV Total energy + Delta-G solvation = -3291.088020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.93633 -38.85175 -37.45928 -36.41856 -35.69336 -32.32310 -31.68173 -29.65957 -28.92176 -27.52703 -25.70406 -25.17390 -22.49062 -21.61709 -20.34435 -18.71611 -18.27651 -17.79394 -16.89841 -16.31887 -15.90606 -15.19103 -15.05008 -14.65361 -14.36442 -14.13922 -13.91414 -13.65369 -13.39088 -13.10935 -12.92901 -12.53104 -12.32797 -11.94798 -11.89556 -11.58173 -11.28633 -11.27226 -11.11553 -11.05965 -10.84606 -10.53156 -10.42073 -10.25292 -9.54771 -9.28604 -8.87892 -8.14348 -7.35780 -6.49025 -4.08546 1.73272 1.98210 2.20999 2.39457 3.08500 3.11499 3.15277 3.15498 3.93810 4.43746 4.59328 4.65818 4.76132 4.97958 5.02996 5.08410 5.21798 5.28278 5.34330 5.42706 5.59329 5.66042 5.69340 5.74617 5.77572 5.94614 5.99739 6.14909 6.30115 6.40158 6.56088 6.63119 6.89229 7.00249 7.08182 7.13243 7.32002 7.59293 7.94438 8.15773 8.95870 9.62290 10.68444 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.004997 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.626286 B = 5601.942065 C = 7377.832206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 C -0.121 4.121 4 C -0.077 4.077 5 C -0.103 4.103 6 C 0.451 3.549 7 O -0.483 6.483 8 O -0.297 6.297 9 C 0.122 3.878 10 C -0.212 4.212 11 C -0.064 4.064 12 C -0.189 4.189 13 C 0.165 3.835 14 O -0.170 6.170 15 C -0.394 4.394 16 H 0.090 0.910 17 C 0.042 3.958 18 N -0.860 5.860 19 Si 0.940 3.060 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.269 1.269 23 C -0.236 4.236 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.272 0.728 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.531 18.641 -0.707 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.127 4.127 3 C -0.178 4.178 4 C -0.115 4.115 5 C -0.141 4.141 6 C 0.293 3.707 7 O -0.368 6.368 8 O -0.213 6.213 9 C 0.082 3.918 10 C -0.231 4.231 11 C -0.082 4.082 12 C -0.208 4.208 13 C 0.111 3.889 14 O -0.073 6.073 15 C -0.470 4.470 16 H 0.107 0.893 17 C -0.162 4.162 18 N -0.494 5.494 19 Si 0.764 3.236 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.194 1.194 23 C -0.256 4.256 24 H 0.116 0.884 25 H 0.118 0.882 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.082 0.918 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.582 17.955 -0.278 17.967 hybrid contribution -1.000 0.091 0.102 1.010 sum -0.418 18.046 -0.176 18.052 Atomic orbital electron populations 1.23779 0.95238 1.02095 1.01744 1.21692 0.95401 0.95397 1.00173 1.20889 1.00271 0.94414 1.02192 1.20546 1.01355 0.94850 0.94727 1.21335 1.00999 0.91915 0.99812 1.24040 0.77333 0.87394 0.81893 1.90736 1.51889 1.61594 1.32533 1.84505 1.69787 1.31850 1.35122 1.18249 0.91443 0.81275 1.00856 1.20425 0.92382 0.98161 1.12158 1.20488 0.98582 0.91316 0.97829 1.20330 0.92222 0.99420 1.08859 1.19111 0.91469 0.86827 0.91497 1.83994 1.20285 1.29059 1.73967 1.21263 0.79221 0.95379 1.51112 0.89289 1.25281 1.00363 0.94220 0.96385 1.70020 1.36317 0.98599 1.44487 0.85792 0.80361 0.78128 0.79274 1.19395 1.20082 1.19410 1.21184 1.01264 0.92220 1.10904 0.88383 0.88212 0.91339 0.91861 0.91698 0.90038 0.90113 0.87634 0.87515 0.86703 0.85957 0.85871 0.91830 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 13.89 29.01 0.40 -1.26 16 2 C -0.13 -1.14 5.31 -101.07 -0.54 -1.67 16 3 C -0.12 -0.86 10.03 36.00 0.36 -0.50 16 4 C -0.08 -0.84 4.67 -27.88 -0.13 -0.97 16 5 C -0.10 -1.13 5.79 -27.88 -0.16 -1.30 16 6 C 0.45 7.43 7.72 36.01 0.28 7.71 16 7 O -0.48 -9.74 15.30 -18.76 -0.29 -10.03 16 8 O -0.30 -5.37 10.04 -23.58 -0.24 -5.61 16 9 C 0.12 2.54 5.34 -39.24 -0.21 2.33 16 10 C -0.21 -3.95 9.98 -39.38 -0.39 -4.34 16 11 C -0.06 -1.16 10.03 -39.63 -0.40 -1.56 16 12 C -0.19 -4.05 9.99 -39.37 -0.39 -4.45 16 13 C 0.17 4.15 6.64 -39.13 -0.26 3.89 16 14 O -0.17 -4.96 9.76 0.05 0.00 -4.96 16 15 C -0.39 -11.30 9.49 30.89 0.29 -11.00 16 16 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 17 C 0.04 1.18 5.49 -17.52 -0.10 1.08 16 18 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 19 Si 0.94 20.83 29.55 -169.99 -5.02 15.81 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 C -0.24 -5.57 8.30 -39.25 -0.33 -5.90 16 24 H 0.10 0.71 8.04 -52.49 -0.42 0.29 16 25 H 0.10 0.89 7.99 -52.49 -0.42 0.47 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 28 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.08 1.00 7.94 -51.93 -0.41 0.58 16 30 H 0.08 0.90 8.05 -51.93 -0.42 0.49 16 31 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.13 3.15 5.64 -52.49 -0.30 2.86 16 LS Contribution 328.24 15.07 4.95 4.95 Total: -1.00 -32.79 328.24 -6.16 -38.95 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.75 Total: 3.41 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -1.57 Total: -17.93 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.76 Total: -24.60 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.52 Total: -20.59 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.79 -6.16 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338199337.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.669 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds