Wall clock time and date at job start Mon Mar 30 2020 01:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50695 * 119.99605 * 2 1 4 4 C 1.50694 * 120.00280 * 179.97438 * 2 1 3 5 5 C 1.53004 * 109.46637 * 94.99823 * 4 2 1 6 6 C 1.50705 * 109.47083 * 179.97438 * 5 4 2 7 7 O 1.20835 * 119.99757 * 0.02562 * 6 5 4 8 8 O 1.34254 * 120.00184 * 179.97438 * 6 5 4 9 9 C 1.35922 * 117.00375 * 185.33870 * 8 6 5 10 10 C 1.38817 * 120.02463 * 246.47514 * 9 8 6 11 11 C 1.38194 * 120.08482 * 179.74189 * 10 9 8 12 12 C 1.38153 * 120.12051 * 0.50611 * 11 10 9 13 13 C 1.38899 * 120.04028 * 359.76957 * 12 11 10 14 14 O 1.35753 * 120.04104 * 179.97438 * 13 12 11 15 15 C 1.34826 * 116.99922 * 185.96753 * 14 13 12 16 16 H 1.08001 * 120.00401 * 354.89598 * 15 14 13 17 17 C 1.38658 * 119.99888 * 174.90274 * 15 14 13 18 18 N 1.31551 * 119.99982 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99943 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47163 * 59.99845 * 19 17 15 21 21 H 1.48501 * 109.46937 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46788 * 299.99763 * 19 17 15 23 23 C 1.38577 * 120.01655 * 66.74292 * 9 8 6 24 24 H 1.07999 * 120.00140 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99188 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47038 * 269.99832 * 3 2 1 27 27 H 1.09002 * 109.47754 * 29.99630 * 3 2 1 28 28 H 1.08997 * 109.47226 * 149.99867 * 3 2 1 29 29 H 1.09006 * 109.47191 * 335.00780 * 4 2 1 30 30 H 1.08993 * 109.47518 * 215.00007 * 4 2 1 31 31 H 1.09001 * 109.46785 * 60.01001 * 5 4 2 32 32 H 1.08993 * 109.47317 * 300.00307 * 5 4 2 33 33 H 1.07998 * 119.96094 * 359.97438 * 10 9 8 34 34 H 1.07996 * 119.94582 * 180.22992 * 11 10 9 35 35 H 1.08004 * 119.98229 * 179.74841 * 12 11 10 36 36 H 0.97000 * 120.00267 * 180.02562 * 18 17 15 37 37 H 1.07996 * 120.06201 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3050 0.0006 5 6 2.4274 -1.6844 -1.4363 6 6 3.1816 -2.9892 -1.4358 7 8 3.4047 -3.5576 -0.3931 8 8 3.6046 -3.5205 -2.5939 9 6 4.1792 -4.7509 -2.5349 10 6 5.5262 -4.9034 -2.8341 11 6 6.1129 -6.1530 -2.7694 12 6 5.3588 -7.2556 -2.4170 13 6 4.0094 -7.1097 -2.1222 14 8 3.2682 -8.1932 -1.7765 15 6 1.9420 -8.0043 -1.6239 16 1 1.5265 -7.0099 -1.6947 17 6 1.1116 -9.0866 -1.3757 18 7 1.6177 -10.2977 -1.2887 19 14 -0.7258 -8.8247 -1.1634 20 1 -1.2854 -8.2188 -2.3983 21 1 -1.3859 -10.1306 -0.9103 22 1 -0.9667 -7.9165 -0.0134 23 6 3.4195 -5.8546 -2.1816 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 2.2451 1.6197 -1.0276 27 1 1.4744 2.0648 0.5138 28 1 3.0159 1.1749 0.5138 29 1 1.4387 -2.0853 0.4351 30 1 2.9743 -1.1985 0.5899 31 1 3.0524 -0.9042 -1.8709 32 1 1.5168 -1.7909 -2.0257 33 1 6.1172 -4.0440 -3.1141 34 1 7.1619 -6.2685 -2.9989 35 1 5.8188 -8.2317 -2.3711 36 1 1.0368 -11.0549 -1.1155 37 1 2.3706 -5.7384 -1.9523 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338199337.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:27 Heat of formation + Delta-G solvation = -89.370075 kcal Electronic energy + Delta-G solvation = -20490.710443 eV Core-core repulsion = 17198.809540 eV Total energy + Delta-G solvation = -3291.900902 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.40470 -40.61783 -38.89916 -37.55296 -37.18240 -34.37121 -32.65767 -31.27794 -30.64150 -28.11193 -27.54689 -26.48549 -23.94880 -23.32056 -21.80094 -20.15717 -19.71000 -19.22782 -18.27061 -17.74149 -17.47462 -16.89286 -16.35780 -16.09831 -15.68809 -15.59727 -15.30517 -15.11931 -14.67859 -14.48941 -14.09570 -13.86203 -13.62822 -13.30827 -13.09898 -12.97385 -12.78778 -12.53455 -12.50829 -12.21556 -12.09353 -11.97587 -11.94764 -11.76085 -11.45613 -10.87800 -9.97678 -9.79608 -9.17667 -8.55313 -6.25122 0.12428 0.52922 1.04736 1.23618 1.28467 1.39135 1.45091 1.79069 2.11305 2.70943 3.03153 3.34826 3.51731 3.88885 3.90083 3.96489 4.07947 4.18866 4.26568 4.29943 4.48250 4.51740 4.66395 4.80269 4.89346 4.90576 4.92971 4.98737 5.05787 5.07969 5.19794 5.32641 5.42627 5.49889 5.53157 5.72754 5.91402 5.96046 5.98534 6.71331 6.88071 7.63390 8.66898 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.004997 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.626286 B = 5601.942065 C = 7377.832206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 C -0.120 4.120 4 C -0.076 4.076 5 C -0.092 4.092 6 C 0.449 3.551 7 O -0.526 6.526 8 O -0.293 6.293 9 C 0.114 3.886 10 C -0.192 4.192 11 C -0.046 4.046 12 C -0.198 4.198 13 C 0.128 3.872 14 O -0.221 6.221 15 C -0.421 4.421 16 H 0.090 0.910 17 C -0.015 4.015 18 N -0.913 5.913 19 Si 1.014 2.986 20 H -0.255 1.255 21 H -0.263 1.263 22 H -0.262 1.262 23 C -0.254 4.254 24 H 0.116 0.884 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.125 0.875 33 H 0.159 0.841 34 H 0.177 0.823 35 H 0.131 0.869 36 H 0.276 0.724 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 21.924 -1.722 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.130 4.130 3 C -0.176 4.176 4 C -0.114 4.114 5 C -0.128 4.128 6 C 0.294 3.706 7 O -0.413 6.413 8 O -0.208 6.208 9 C 0.073 3.927 10 C -0.210 4.210 11 C -0.064 4.064 12 C -0.217 4.217 13 C 0.077 3.923 14 O -0.127 6.127 15 C -0.497 4.497 16 H 0.108 0.892 17 C -0.213 4.213 18 N -0.550 5.550 19 Si 0.833 3.167 20 H -0.179 1.179 21 H -0.187 1.187 22 H -0.187 1.187 23 C -0.274 4.274 24 H 0.134 0.866 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.160 0.840 32 H 0.143 0.857 33 H 0.177 0.823 34 H 0.194 0.806 35 H 0.148 0.852 36 H 0.085 0.915 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.266 21.293 -1.316 21.371 hybrid contribution -0.958 -0.696 0.358 1.237 sum 0.308 20.597 -0.958 20.622 Atomic orbital electron populations 1.23918 0.95293 1.02602 1.01164 1.21691 0.95463 0.95158 1.00721 1.20918 1.00128 0.93374 1.03217 1.20504 1.00952 0.95439 0.94467 1.21535 1.01418 0.89457 1.00435 1.25207 0.76333 0.88350 0.80686 1.90728 1.53636 1.63066 1.33865 1.84539 1.69849 1.30398 1.36039 1.18469 0.92359 0.81600 1.00284 1.21049 0.91459 0.99840 1.08668 1.21090 1.00662 0.89714 0.94886 1.20718 0.91029 1.01341 1.08644 1.19711 0.92858 0.86747 0.92986 1.83951 1.20664 1.31094 1.76991 1.21657 0.79886 0.95954 1.52178 0.89229 1.26542 1.05642 0.93594 0.95562 1.70145 1.38414 0.99665 1.46773 0.84730 0.73521 0.78710 0.79774 1.17949 1.18665 1.18661 1.21169 1.00814 0.93106 1.12336 0.86629 0.89057 0.89992 0.90935 0.91656 0.92354 0.90725 0.84044 0.85722 0.82337 0.80575 0.85153 0.91458 0.87319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.98 13.89 67.77 0.94 -2.03 16 2 C -0.13 -2.07 5.31 -16.50 -0.09 -2.16 16 3 C -0.12 -1.36 10.03 71.23 0.71 -0.64 16 4 C -0.08 -1.57 4.67 29.85 0.14 -1.43 16 5 C -0.09 -1.81 5.79 29.85 0.17 -1.64 16 6 C 0.45 14.37 7.72 71.24 0.55 14.92 16 7 O -0.53 -21.49 15.30 21.94 0.34 -21.16 16 8 O -0.29 -10.11 10.04 4.66 0.05 -10.06 16 9 C 0.11 4.61 5.34 22.49 0.12 4.73 16 10 C -0.19 -6.42 9.98 22.40 0.22 -6.20 16 11 C -0.05 -1.50 10.03 22.24 0.22 -1.28 16 12 C -0.20 -8.45 9.99 22.41 0.22 -8.23 16 13 C 0.13 6.71 6.64 22.56 0.15 6.86 16 14 O -0.22 -13.75 9.76 -22.73 -0.22 -13.97 16 15 C -0.42 -25.70 9.49 67.92 0.64 -25.06 16 16 H 0.09 5.21 5.21 -2.91 -0.02 5.20 16 17 C -0.01 -0.86 5.49 84.84 0.47 -0.40 16 18 N -0.91 -56.62 13.67 21.61 0.30 -56.32 16 19 Si 1.01 44.10 29.55 68.60 2.03 46.13 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 22 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 23 C -0.25 -12.44 8.30 22.49 0.19 -12.25 16 24 H 0.12 1.37 8.04 -2.91 -0.02 1.35 16 25 H 0.09 1.54 7.99 -2.91 -0.02 1.52 16 26 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.70 8.06 -2.39 -0.02 0.68 16 28 H 0.06 0.74 8.08 -2.39 -0.02 0.72 16 29 H 0.06 1.46 7.94 -2.38 -0.02 1.44 16 30 H 0.07 1.62 8.05 -2.39 -0.02 1.60 16 31 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 34 H 0.18 3.95 8.06 -2.91 -0.02 3.92 16 35 H 0.13 5.26 8.06 -2.91 -0.02 5.24 16 36 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 37 H 0.11 5.64 5.64 -2.91 -0.02 5.63 16 Total: -1.00 -77.62 328.24 8.22 -69.40 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 1.07 Total: 20.80 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 4.67 Total: -34.81 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.30 Total: -56.32 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: 0.16 Total: -45.20 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -77.62 8.22 -69.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338199337.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.969 kcal (2) G-P(sol) polarization free energy of solvation -77.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds