Wall clock time and date at job start Mon Mar 30 2020 02:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.46745 * 2 1 4 4 C 1.50699 * 109.47154 * 119.99294 * 2 1 3 5 5 H 1.07999 * 119.99801 * 119.99990 * 4 2 1 6 6 C 1.37882 * 120.00283 * 300.00299 * 4 2 1 7 7 N 1.31517 * 119.99722 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00027 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47259 * 59.99955 * 8 6 4 10 10 H 1.48500 * 109.47183 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47040 * 299.99658 * 8 6 4 12 12 C 1.50698 * 109.47337 * 239.99651 * 2 1 3 13 13 O 1.20822 * 119.99804 * 240.00057 * 12 2 1 14 14 O 1.34231 * 120.00053 * 60.00042 * 12 2 1 15 15 C 1.45198 * 116.99983 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.46884 * 179.97438 * 15 14 12 17 17 H 1.09006 * 110.66536 * 303.23550 * 16 15 14 18 18 C 1.54705 * 110.74554 * 179.82727 * 16 15 14 19 19 C 1.51644 * 101.90612 * 216.31834 * 18 16 15 20 20 C 1.37749 * 132.17183 * 195.85058 * 19 18 16 21 21 C 1.38352 * 119.97376 * 179.51502 * 20 19 18 22 22 C 1.38286 * 119.76311 * 359.97438 * 21 20 19 23 23 C 1.37933 * 120.35535 * 0.13549 * 22 21 20 24 24 C 1.38872 * 107.03374 * 15.67278 * 19 18 16 25 25 O 1.36130 * 111.25352 * 0.64331 * 24 19 18 26 26 H 1.08998 * 109.46920 * 60.00438 * 1 2 3 27 27 H 1.08998 * 109.46765 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46835 * 300.00287 * 1 2 3 29 29 H 0.97000 * 119.99888 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47379 * 59.99613 * 15 14 12 31 31 H 1.09001 * 109.46782 * 299.99696 * 15 14 12 32 32 H 1.09001 * 110.94440 * 334.47158 * 18 16 15 33 33 H 1.09004 * 110.94939 * 98.16366 * 18 16 15 34 34 H 1.07995 * 120.01114 * 359.49436 * 20 19 18 35 35 H 1.08001 * 120.11584 * 179.97438 * 21 20 19 36 36 H 1.08003 * 119.81909 * 180.16266 * 22 21 20 37 37 H 1.08005 * 119.87662 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7102 1.2305 5 1 2.6533 -1.5883 1.1315 6 6 1.6993 -0.2391 2.4828 7 7 0.9435 0.8305 2.6034 8 14 2.3226 -1.1191 4.0080 9 1 3.8075 -1.1185 4.0078 10 1 1.8269 -0.4195 5.2205 11 1 1.8281 -2.5194 4.0084 12 6 2.0324 -0.7105 -1.2304 13 8 2.7271 -1.6928 -1.1194 14 8 1.7082 -0.2520 -2.4496 15 6 2.2269 -0.9865 -3.5895 16 6 1.7549 -0.3200 -4.8833 17 1 0.6669 -0.2589 -4.9098 18 6 2.2954 -1.0779 -6.1190 19 6 2.5684 0.0568 -7.0873 20 6 2.7888 0.0795 -8.4468 21 6 3.0068 1.2840 -9.0916 22 6 3.0018 2.4616 -8.3666 23 6 2.7836 2.4408 -7.0048 24 6 2.5675 1.2320 -6.3474 25 8 2.3420 0.9843 -5.0280 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7089 1.1617 3.4843 30 1 1.8628 -2.0134 -3.5564 31 1 3.3165 -0.9862 -3.5567 32 1 3.2137 -1.6130 -5.8770 33 1 1.5435 -1.7585 -6.5184 34 1 2.7917 -0.8425 -9.0090 35 1 3.1803 1.3045 -10.1574 36 1 3.1693 3.4026 -8.8695 37 1 2.7809 3.3651 -6.4462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342708994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:45 Heat of formation + Delta-G solvation = -115.831351 kcal Electronic energy + Delta-G solvation = -20531.377303 eV Core-core repulsion = 17238.328953 eV Total energy + Delta-G solvation = -3293.048350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.24108 -41.29042 -38.52417 -37.44057 -35.94533 -34.03170 -32.74999 -31.51148 -30.96751 -27.52047 -27.26849 -24.90540 -23.49657 -22.80394 -22.56098 -21.61478 -18.79998 -18.58792 -18.08691 -17.88308 -17.67914 -17.01163 -16.73907 -16.38155 -15.71229 -15.21627 -14.84046 -14.56644 -14.36495 -14.13137 -14.07308 -13.85190 -13.48382 -13.18502 -12.98190 -12.91305 -12.72911 -12.63224 -12.60190 -12.31082 -12.05792 -11.93290 -11.74653 -11.66001 -11.14321 -11.06867 -10.55020 -9.84996 -9.13721 -8.21345 -6.35436 0.32431 0.40956 1.38280 1.41766 1.44417 1.51670 1.76077 2.17989 2.42545 2.76075 3.08577 3.28501 3.45884 3.76091 3.85747 3.94978 4.13650 4.18569 4.25547 4.36654 4.41025 4.55685 4.63204 4.66597 4.77245 4.81892 4.87891 4.97337 5.10235 5.33413 5.39018 5.42367 5.45841 5.55137 5.66437 5.71457 5.86403 6.07819 6.22226 6.70824 6.98799 7.33483 8.85183 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.043769 B = 0.003203 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.567222 B = 8739.638017 C = 9010.019003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.049 3.951 3 H 0.047 0.953 4 C -0.541 4.541 5 H 0.058 0.942 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.966 3.034 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.271 1.271 12 C 0.474 3.526 13 O -0.540 6.540 14 O -0.361 6.361 15 C 0.061 3.939 16 C 0.085 3.915 17 H 0.106 0.894 18 C -0.092 4.092 19 C -0.186 4.186 20 C -0.072 4.072 21 C -0.148 4.148 22 C -0.085 4.085 23 C -0.159 4.159 24 C 0.069 3.931 25 O -0.325 6.325 26 H 0.047 0.953 27 H 0.032 0.968 28 H 0.078 0.922 29 H 0.269 0.731 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.127 0.873 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.893 -0.227 -23.901 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.030 3.970 3 H 0.064 0.936 4 C -0.579 4.579 5 H 0.076 0.924 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.791 3.209 9 H -0.200 1.200 10 H -0.198 1.198 11 H -0.197 1.197 12 C 0.320 3.680 13 O -0.430 6.430 14 O -0.278 6.278 15 C -0.013 4.013 16 C 0.029 3.971 17 H 0.124 0.876 18 C -0.129 4.129 19 C -0.187 4.187 20 C -0.090 4.090 21 C -0.166 4.166 22 C -0.103 4.103 23 C -0.177 4.177 24 C 0.024 3.976 25 O -0.240 6.240 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.145 0.855 34 H 0.170 0.830 35 H 0.177 0.823 36 H 0.175 0.825 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.053 -0.273 -23.562 23.587 hybrid contribution 0.417 -0.381 1.166 1.296 sum 1.470 -0.654 -22.396 22.453 Atomic orbital electron populations 1.21561 0.94196 1.00088 1.01965 1.18686 0.96091 0.95993 0.86207 0.93572 1.21236 1.32829 1.13400 0.90449 0.92387 1.25679 0.94837 0.95641 1.01673 1.69963 1.36602 1.23383 1.24886 0.85488 0.78680 0.78714 0.78050 1.19957 1.19841 1.19651 1.24845 0.76029 0.82507 0.84638 1.90469 1.37396 1.27753 1.87376 1.86604 1.69940 1.56008 1.15238 1.23310 0.99608 0.96147 0.82218 1.23501 0.99222 0.80718 0.93633 0.87613 1.21760 1.03994 0.96650 0.90490 1.20994 1.07902 0.93835 0.95924 1.20695 0.96929 1.00055 0.91335 1.21479 1.01975 0.91531 1.01573 1.21255 0.96934 1.00373 0.91754 1.20610 1.06514 0.95163 0.95437 1.20076 0.98155 0.96082 0.83284 1.86940 1.77655 1.36806 1.22595 0.93431 0.94843 0.90362 0.92193 0.87601 0.91387 0.88099 0.85494 0.83032 0.82320 0.82471 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.90 71.98 0.64 -5.17 16 2 C 0.05 2.62 2.74 -12.29 -0.03 2.58 16 3 H 0.05 2.59 8.14 -2.38 -0.02 2.57 16 4 C -0.54 -31.39 8.37 25.60 0.21 -31.18 16 5 H 0.06 3.50 6.76 -2.91 -0.02 3.48 16 6 C 0.02 1.21 5.30 84.66 0.45 1.66 16 7 N -0.91 -51.47 11.32 21.45 0.24 -51.23 16 8 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 C 0.47 23.13 7.25 71.24 0.52 23.65 16 13 O -0.54 -28.19 15.21 21.98 0.33 -27.85 16 14 O -0.36 -14.95 10.12 -49.93 -0.51 -15.45 16 15 C 0.06 1.93 5.14 71.98 0.37 2.30 16 16 C 0.08 2.23 3.92 31.18 0.12 2.35 16 17 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 18 C -0.09 -1.73 6.65 30.73 0.20 -1.52 16 19 C -0.19 -3.94 6.27 -19.53 -0.12 -4.07 16 20 C -0.07 -1.13 10.03 22.18 0.22 -0.91 16 21 C -0.15 -2.02 10.07 22.31 0.22 -1.80 16 22 C -0.09 -1.37 10.02 22.21 0.22 -1.14 16 23 C -0.16 -3.60 10.06 22.45 0.23 -3.38 16 24 C 0.07 1.85 7.04 22.67 0.16 2.01 16 25 O -0.32 -10.52 10.80 -94.67 -1.02 -11.54 16 26 H 0.05 2.02 8.11 -2.39 -0.02 2.00 16 27 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 4.08 6.07 -2.39 -0.01 4.06 16 29 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.11 2.92 8.13 -2.39 -0.02 2.90 16 31 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 32 H 0.10 1.76 7.92 -2.39 -0.02 1.74 16 33 H 0.13 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -69.43 318.32 5.56 -63.88 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 1.07 Total: 10.47 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 3.42 Total: -14.62 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.24 Total: -51.23 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -1.19 Total: -54.84 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -69.43 5.56 -63.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342708994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.955 kcal (2) G-P(sol) polarization free energy of solvation -69.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds