Wall clock time and date at job start Mon Mar 30 2020 02:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46952 * 2 1 4 4 C 1.50696 * 109.47149 * 240.00115 * 2 1 3 5 5 H 1.08002 * 119.99904 * 333.63246 * 4 2 1 6 6 C 1.37873 * 119.99928 * 153.63751 * 4 2 1 7 7 N 1.31519 * 120.00329 * 6.96731 * 6 4 2 8 8 Si 1.86799 * 120.00031 * 186.96864 * 6 4 2 9 9 H 1.48501 * 109.47236 * 269.99917 * 8 6 4 10 10 H 1.48501 * 109.47172 * 30.00154 * 8 6 4 11 11 H 1.48506 * 109.47110 * 150.00016 * 8 6 4 12 12 C 1.50704 * 109.47097 * 119.99854 * 2 1 3 13 13 O 1.20827 * 119.99552 * 120.00195 * 12 2 1 14 14 O 1.34231 * 120.00035 * 300.00247 * 12 2 1 15 15 C 1.45189 * 117.00014 * 180.02562 * 14 12 2 16 16 C 1.53004 * 109.47294 * 180.02562 * 15 14 12 17 17 H 1.08997 * 110.66273 * 303.23947 * 16 15 14 18 18 C 1.54705 * 110.74676 * 179.82759 * 16 15 14 19 19 C 1.51646 * 101.90580 * 216.31880 * 18 16 15 20 20 C 1.37738 * 132.17548 * 195.85128 * 19 18 16 21 21 C 1.38345 * 119.97772 * 179.51414 * 20 19 18 22 22 C 1.38278 * 119.76706 * 359.97438 * 21 20 19 23 23 C 1.37934 * 120.35016 * 0.13131 * 22 21 20 24 24 C 1.38876 * 107.03068 * 15.67791 * 19 18 16 25 25 O 1.36133 * 111.25190 * 0.63890 * 24 19 18 26 26 H 1.08998 * 109.47207 * 295.61311 * 1 2 3 27 27 H 1.09000 * 109.47134 * 55.61184 * 1 2 3 28 28 H 1.09000 * 109.46661 * 175.61159 * 1 2 3 29 29 H 0.97001 * 119.99807 * 355.19899 * 7 6 4 30 30 H 1.09002 * 109.47167 * 300.00287 * 15 14 12 31 31 H 1.09006 * 109.47261 * 59.99866 * 15 14 12 32 32 H 1.09004 * 110.94632 * 334.47315 * 18 16 15 33 33 H 1.09002 * 110.94378 * 98.16577 * 18 16 15 34 34 H 1.08004 * 120.01153 * 359.49721 * 20 19 18 35 35 H 1.08005 * 120.12096 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.82686 * 180.16550 * 22 21 20 37 37 H 1.08003 * 119.87559 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 1.4223 -1.4643 -1.7056 6 6 3.2708 -0.3978 -1.7495 7 7 4.0705 0.4176 -1.0974 8 14 3.8129 -1.1325 -3.3792 9 1 4.5157 -2.4174 -3.1335 10 1 2.6226 -1.3748 -4.2334 11 1 4.7315 -0.1894 -4.0662 12 6 2.0324 -0.7104 1.2305 13 8 2.7271 -1.6928 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2277 -0.9856 3.5896 16 6 1.7555 -0.3192 4.8834 17 1 2.0596 0.7272 4.9103 18 6 2.2898 -1.0813 6.1191 19 6 1.1284 -0.9616 7.0869 20 6 1.0329 -1.1622 8.4462 21 6 -0.1758 -0.9674 9.0905 22 6 -1.2843 -0.5708 8.3651 23 6 -1.1913 -0.3714 7.0034 24 6 0.0208 -0.5697 6.3465 25 8 0.3302 -0.4391 5.0272 26 1 -0.3633 0.4442 0.9267 27 1 -0.3633 0.5804 -0.8481 28 1 -0.3633 -1.0247 -0.0786 29 1 3.7630 0.8536 -0.2873 30 1 1.8643 -2.0127 3.5568 31 1 3.3172 -0.9844 3.5566 32 1 2.4891 -2.1253 5.8769 33 1 3.1815 -0.5986 6.5191 34 1 1.9012 -1.4718 9.0089 35 1 -0.2534 -1.1244 10.1562 36 1 -2.2276 -0.4158 8.8675 37 1 -2.0619 -0.0613 6.4445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342708998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:47 Heat of formation + Delta-G solvation = -103.720000 kcal Electronic energy + Delta-G solvation = -20741.735044 eV Core-core repulsion = 17449.211882 eV Total energy + Delta-G solvation = -3292.523162 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.27471 -39.35706 -37.61466 -35.61548 -33.89931 -33.05958 -31.08120 -30.38883 -30.16995 -26.36801 -24.70413 -23.20268 -22.59185 -21.85409 -21.57101 -19.89265 -17.68484 -17.01233 -16.87177 -16.66883 -16.02987 -15.63919 -15.32871 -14.52565 -14.20041 -13.83841 -13.72950 -13.54999 -13.33515 -13.20060 -12.77414 -12.30565 -12.01099 -11.94112 -11.84499 -11.65798 -11.20949 -11.05696 -10.97867 -10.79958 -10.71625 -10.17164 -9.97963 -9.87993 -9.09960 -9.08694 -8.77610 -8.45534 -8.27637 -6.52275 -4.22890 1.08990 1.20510 3.08105 3.36055 3.43051 3.50119 3.50301 3.57973 3.61237 4.21166 4.45514 4.49333 4.69004 4.82927 4.85697 5.02096 5.07315 5.19313 5.33261 5.37512 5.39878 5.52011 5.64200 5.74136 5.89955 6.12207 6.16481 6.24148 6.25437 6.27635 6.39631 6.46407 6.57713 6.96778 7.08755 7.09627 7.40428 7.91854 8.30810 8.68396 9.06205 9.49301 10.87351 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.045144 B = 0.003431 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.094258 B = 8159.845266 C = 8547.088131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.036 3.964 3 H 0.067 0.933 4 C -0.576 4.576 5 H 0.059 0.941 6 C 0.028 3.972 7 N -0.894 5.894 8 Si 1.077 2.923 9 H -0.286 1.286 10 H -0.285 1.285 11 H -0.283 1.283 12 C 0.445 3.555 13 O -0.501 6.501 14 O -0.368 6.368 15 C 0.065 3.935 16 C 0.087 3.913 17 H 0.098 0.902 18 C -0.103 4.103 19 C -0.177 4.177 20 C -0.069 4.069 21 C -0.155 4.155 22 C -0.085 4.085 23 C -0.141 4.141 24 C 0.111 3.889 25 O -0.289 6.289 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.267 0.733 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.935 -0.427 18.802 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.016 3.984 3 H 0.084 0.916 4 C -0.613 4.613 5 H 0.078 0.922 6 C -0.178 4.178 7 N -0.529 5.529 8 Si 0.904 3.096 9 H -0.212 1.212 10 H -0.211 1.211 11 H -0.208 1.208 12 C 0.287 3.713 13 O -0.386 6.386 14 O -0.287 6.287 15 C -0.010 4.010 16 C 0.031 3.969 17 H 0.116 0.884 18 C -0.140 4.140 19 C -0.178 4.178 20 C -0.088 4.088 21 C -0.173 4.173 22 C -0.103 4.103 23 C -0.160 4.160 24 C 0.065 3.935 25 O -0.202 6.202 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.566 -0.817 17.510 18.392 hybrid contribution -0.934 -0.194 1.375 1.673 sum -6.500 -1.011 18.885 19.997 Atomic orbital electron populations 1.21632 0.95462 1.00867 1.00280 1.19038 0.93936 0.97773 0.87617 0.91562 1.21707 1.06082 1.24916 1.08560 0.92224 1.26015 0.92668 0.95760 1.03373 1.70786 1.36185 1.27805 1.18093 0.83442 0.75794 0.76134 0.74254 1.21224 1.21109 1.20827 1.26625 0.77226 0.84150 0.83259 1.90498 1.35215 1.26397 1.86478 1.86717 1.70661 1.55932 1.15346 1.22870 0.99008 0.95861 0.83236 1.23443 0.78417 1.00903 0.94138 0.88409 1.21769 0.97387 1.02495 0.92375 1.20782 0.95822 1.06171 0.94998 1.20295 0.98052 0.98302 0.92107 1.21002 0.92697 1.03637 0.99991 1.20869 0.98831 0.97874 0.92775 1.20315 0.95996 1.05539 0.94145 1.19716 0.94933 0.94941 0.83867 1.86997 1.24736 1.87888 1.20604 0.93932 0.92354 0.93734 0.92210 0.91073 0.89730 0.88678 0.88467 0.85834 0.85592 0.85241 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.13 37.16 0.34 -2.32 16 2 C 0.04 0.92 2.38 -92.92 -0.22 0.70 16 3 H 0.07 1.73 6.93 -51.93 -0.36 1.37 16 4 C -0.58 -16.30 7.55 -34.44 -0.26 -16.56 16 5 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 6 C 0.03 0.81 5.45 -17.82 -0.10 0.71 16 7 N -0.89 -26.95 13.63 55.43 0.76 -26.20 16 8 Si 1.08 25.39 29.91 -169.99 -5.08 20.30 16 9 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.44 11.27 7.08 36.01 0.25 11.53 16 13 O -0.50 -14.12 15.78 -18.75 -0.30 -14.42 16 14 O -0.37 -7.98 10.04 -40.82 -0.41 -8.39 16 15 C 0.07 1.14 5.14 37.16 0.19 1.33 16 16 C 0.09 1.25 3.92 -25.83 -0.10 1.15 16 17 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 18 C -0.10 -1.16 6.65 -26.52 -0.18 -1.34 16 19 C -0.18 -2.13 6.27 -104.10 -0.65 -2.78 16 20 C -0.07 -0.69 10.03 -39.72 -0.40 -1.08 16 21 C -0.16 -1.38 10.07 -39.53 -0.40 -1.78 16 22 C -0.09 -0.80 10.02 -39.68 -0.40 -1.19 16 23 C -0.14 -1.65 10.06 -39.30 -0.40 -2.04 16 24 C 0.11 1.54 7.04 -38.95 -0.27 1.27 16 25 O -0.29 -4.68 10.80 -20.54 -0.22 -4.91 16 26 H 0.04 0.82 8.01 -51.93 -0.42 0.41 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.27 7.99 6.64 -40.82 -0.27 7.72 16 30 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 31 H 0.08 1.41 8.13 -51.93 -0.42 0.99 16 32 H 0.09 1.02 7.93 -51.93 -0.41 0.61 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -33.58 320.66 -7.90 -41.49 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.89 Total: -0.29 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.59 Total: -12.42 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.76 Total: -26.20 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.93 Total: -27.71 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.58 -7.90 -41.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342708998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.233 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds