Wall clock time and date at job start Mon Mar 30 2020 02:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46952 * 2 1 4 4 C 1.50696 * 109.47149 * 240.00115 * 2 1 3 5 5 H 1.08002 * 119.99904 * 333.63246 * 4 2 1 6 6 C 1.37873 * 119.99928 * 153.63751 * 4 2 1 7 7 N 1.31519 * 120.00329 * 6.96731 * 6 4 2 8 8 Si 1.86799 * 120.00031 * 186.96864 * 6 4 2 9 9 H 1.48501 * 109.47236 * 269.99917 * 8 6 4 10 10 H 1.48501 * 109.47172 * 30.00154 * 8 6 4 11 11 H 1.48506 * 109.47110 * 150.00016 * 8 6 4 12 12 C 1.50704 * 109.47097 * 119.99854 * 2 1 3 13 13 O 1.20827 * 119.99552 * 120.00195 * 12 2 1 14 14 O 1.34231 * 120.00035 * 300.00247 * 12 2 1 15 15 C 1.45189 * 117.00014 * 180.02562 * 14 12 2 16 16 C 1.53004 * 109.47294 * 180.02562 * 15 14 12 17 17 H 1.08997 * 110.66273 * 303.23947 * 16 15 14 18 18 C 1.54705 * 110.74676 * 179.82759 * 16 15 14 19 19 C 1.51646 * 101.90580 * 216.31880 * 18 16 15 20 20 C 1.37738 * 132.17548 * 195.85128 * 19 18 16 21 21 C 1.38345 * 119.97772 * 179.51414 * 20 19 18 22 22 C 1.38278 * 119.76706 * 359.97438 * 21 20 19 23 23 C 1.37934 * 120.35016 * 0.13131 * 22 21 20 24 24 C 1.38876 * 107.03068 * 15.67791 * 19 18 16 25 25 O 1.36133 * 111.25190 * 0.63890 * 24 19 18 26 26 H 1.08998 * 109.47207 * 295.61311 * 1 2 3 27 27 H 1.09000 * 109.47134 * 55.61184 * 1 2 3 28 28 H 1.09000 * 109.46661 * 175.61159 * 1 2 3 29 29 H 0.97001 * 119.99807 * 355.19899 * 7 6 4 30 30 H 1.09002 * 109.47167 * 300.00287 * 15 14 12 31 31 H 1.09006 * 109.47261 * 59.99866 * 15 14 12 32 32 H 1.09004 * 110.94632 * 334.47315 * 18 16 15 33 33 H 1.09002 * 110.94378 * 98.16577 * 18 16 15 34 34 H 1.08004 * 120.01153 * 359.49721 * 20 19 18 35 35 H 1.08005 * 120.12096 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.82686 * 180.16550 * 22 21 20 37 37 H 1.08003 * 119.87559 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 1.4223 -1.4643 -1.7056 6 6 3.2708 -0.3978 -1.7495 7 7 4.0705 0.4176 -1.0974 8 14 3.8129 -1.1325 -3.3792 9 1 4.5157 -2.4174 -3.1335 10 1 2.6226 -1.3748 -4.2334 11 1 4.7315 -0.1894 -4.0662 12 6 2.0324 -0.7104 1.2305 13 8 2.7271 -1.6928 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2277 -0.9856 3.5896 16 6 1.7555 -0.3192 4.8834 17 1 2.0596 0.7272 4.9103 18 6 2.2898 -1.0813 6.1191 19 6 1.1284 -0.9616 7.0869 20 6 1.0329 -1.1622 8.4462 21 6 -0.1758 -0.9674 9.0905 22 6 -1.2843 -0.5708 8.3651 23 6 -1.1913 -0.3714 7.0034 24 6 0.0208 -0.5697 6.3465 25 8 0.3302 -0.4391 5.0272 26 1 -0.3633 0.4442 0.9267 27 1 -0.3633 0.5804 -0.8481 28 1 -0.3633 -1.0247 -0.0786 29 1 3.7630 0.8536 -0.2873 30 1 1.8643 -2.0127 3.5568 31 1 3.3172 -0.9844 3.5566 32 1 2.4891 -2.1253 5.8769 33 1 3.1815 -0.5986 6.5191 34 1 1.9012 -1.4718 9.0089 35 1 -0.2534 -1.1244 10.1562 36 1 -2.2276 -0.4158 8.8675 37 1 -2.0619 -0.0613 6.4445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342708998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:46 Heat of formation + Delta-G solvation = -122.971297 kcal Electronic energy + Delta-G solvation = -20742.569843 eV Core-core repulsion = 17449.211882 eV Total energy + Delta-G solvation = -3293.357961 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.27501 -41.24587 -38.55452 -37.44607 -35.99032 -34.07549 -32.98717 -31.57458 -30.99762 -27.54779 -26.77827 -25.00227 -23.53116 -22.85640 -22.60640 -21.79807 -19.02970 -18.71466 -18.48851 -17.88378 -17.57220 -17.00753 -16.56600 -15.93637 -15.69953 -15.65376 -15.14246 -14.68371 -14.36032 -14.21045 -13.95687 -13.86143 -13.73082 -13.32757 -12.96583 -12.92788 -12.86164 -12.64011 -12.61209 -12.01527 -11.96594 -11.84329 -11.77232 -11.67554 -11.12640 -10.85832 -10.59162 -9.87893 -9.17076 -8.77203 -6.48329 0.29491 0.38245 1.47247 1.52278 1.56403 1.79078 1.80302 2.12844 2.53554 2.73112 3.11530 3.25245 3.45835 3.70308 3.80408 3.90792 4.09518 4.16472 4.22491 4.31920 4.36228 4.37703 4.52058 4.54480 4.59455 4.71151 4.76655 4.81861 5.06706 5.11903 5.25214 5.36408 5.43212 5.47432 5.52570 5.67884 5.80941 6.06268 6.18581 6.43753 7.07601 7.32008 8.63283 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.045144 B = 0.003431 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.094258 B = 8159.845266 C = 8547.088131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.024 3.976 3 H 0.056 0.944 4 C -0.591 4.591 5 H 0.055 0.945 6 C -0.021 4.021 7 N -0.920 5.920 8 Si 1.119 2.881 9 H -0.284 1.284 10 H -0.261 1.261 11 H -0.276 1.276 12 C 0.450 3.550 13 O -0.537 6.537 14 O -0.367 6.367 15 C 0.062 3.938 16 C 0.088 3.912 17 H 0.103 0.897 18 C -0.094 4.094 19 C -0.186 4.186 20 C -0.073 4.073 21 C -0.147 4.147 22 C -0.084 4.084 23 C -0.156 4.156 24 C 0.068 3.932 25 O -0.322 6.322 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.255 0.745 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.150 0.850 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.535 -0.770 20.813 22.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.004 3.996 3 H 0.073 0.927 4 C -0.627 4.627 5 H 0.073 0.927 6 C -0.221 4.221 7 N -0.556 5.556 8 Si 0.940 3.060 9 H -0.210 1.210 10 H -0.185 1.185 11 H -0.201 1.201 12 C 0.295 3.705 13 O -0.425 6.425 14 O -0.285 6.285 15 C -0.012 4.012 16 C 0.033 3.967 17 H 0.121 0.879 18 C -0.131 4.131 19 C -0.187 4.187 20 C -0.091 4.091 21 C -0.165 4.165 22 C -0.102 4.102 23 C -0.174 4.174 24 C 0.024 3.976 25 O -0.237 6.237 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.168 0.832 35 H 0.178 0.822 36 H 0.178 0.822 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.207 -1.142 19.560 20.553 hybrid contribution -0.856 -0.083 0.972 1.298 sum -7.063 -1.225 20.531 21.747 Atomic orbital electron populations 1.21544 0.92396 1.01306 1.01939 1.19095 0.96536 0.96710 0.87230 0.92656 1.21998 1.06177 1.24750 1.09799 0.92710 1.27430 0.93036 0.95549 1.06111 1.70908 1.36817 1.29520 1.18356 0.82927 0.76508 0.75503 0.71056 1.20981 1.18548 1.20108 1.26277 0.76403 0.83381 0.84489 1.90469 1.36793 1.27983 1.87267 1.86636 1.70377 1.56050 1.15411 1.23193 0.99524 0.95627 0.82897 1.23424 0.78535 1.01330 0.93449 0.87885 1.21756 0.98172 1.02466 0.90709 1.20962 0.95194 1.06613 0.95951 1.20690 0.99589 0.97532 0.91275 1.21482 0.91897 1.01466 1.01612 1.21273 1.00497 0.96676 0.91740 1.20614 0.95517 1.05901 0.95417 1.20091 0.96627 0.97697 0.83216 1.86920 1.25331 1.88781 1.22661 0.92193 0.90809 0.93819 0.93523 0.91665 0.89026 0.88353 0.85796 0.83186 0.82234 0.82234 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.84 9.13 71.98 0.66 -4.18 16 2 C 0.02 1.24 2.38 -12.28 -0.03 1.21 16 3 H 0.06 2.98 6.93 -2.39 -0.02 2.96 16 4 C -0.59 -33.84 7.55 25.60 0.19 -33.65 16 5 H 0.05 3.11 7.82 -2.91 -0.02 3.09 16 6 C -0.02 -1.24 5.45 84.65 0.46 -0.78 16 7 N -0.92 -56.59 13.63 21.45 0.29 -56.30 16 8 Si 1.12 51.02 29.91 68.60 2.05 53.07 16 9 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 10 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 12 C 0.45 23.37 7.08 71.24 0.50 23.87 16 13 O -0.54 -31.06 15.78 21.96 0.35 -30.72 16 14 O -0.37 -16.26 10.04 -49.93 -0.50 -16.76 16 15 C 0.06 2.19 5.14 71.98 0.37 2.56 16 16 C 0.09 2.55 3.92 31.18 0.12 2.67 16 17 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 18 C -0.09 -2.01 6.65 30.73 0.20 -1.81 16 19 C -0.19 -4.21 6.27 -19.53 -0.12 -4.33 16 20 C -0.07 -1.22 10.03 22.18 0.22 -1.00 16 21 C -0.15 -2.07 10.07 22.30 0.22 -1.84 16 22 C -0.08 -1.34 10.02 22.21 0.22 -1.11 16 23 C -0.16 -3.51 10.06 22.45 0.23 -3.28 16 24 C 0.07 1.88 7.04 22.68 0.16 2.04 16 25 O -0.32 -10.68 10.80 -94.70 -1.02 -11.71 16 26 H 0.06 2.29 8.01 -2.39 -0.02 2.27 16 27 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.25 15.77 6.64 -92.71 -0.62 15.16 16 30 H 0.06 2.38 8.13 -2.39 -0.02 2.37 16 31 H 0.09 3.11 8.13 -2.38 -0.02 3.09 16 32 H 0.10 2.01 7.93 -2.38 -0.02 1.99 16 33 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -74.22 320.66 5.80 -68.42 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 1.22 Total: 13.61 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 3.42 Total: -19.62 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.29 Total: -56.30 kcal Atomic # 8 Polarization: -58.01 SS G_CDS: -1.18 Total: -59.18 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.07 kcal Total: -74.22 5.80 -68.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342708998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.550 kcal (2) G-P(sol) polarization free energy of solvation -74.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds