Wall clock time and date at job start Mon Mar 30 2020 02:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47507 * 2 1 4 4 C 1.50699 * 109.46920 * 239.99835 * 2 1 3 5 5 H 1.08005 * 119.99804 * 240.00549 * 4 2 1 6 6 C 1.37872 * 120.00267 * 59.99882 * 4 2 1 7 7 N 1.31515 * 119.99964 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00340 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47047 * 60.00245 * 8 6 4 10 10 H 1.48497 * 109.47086 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46716 * 300.00265 * 8 6 4 12 12 C 1.50706 * 109.47111 * 119.99930 * 2 1 3 13 13 O 1.20823 * 119.99622 * 119.99506 * 12 2 1 14 14 O 1.34224 * 119.99737 * 299.99988 * 12 2 1 15 15 C 1.45201 * 116.99592 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.47228 * 179.97438 * 15 14 12 17 17 H 1.09004 * 110.66922 * 56.75799 * 16 15 14 18 18 C 1.54702 * 110.75494 * 180.18309 * 16 15 14 19 19 C 1.51646 * 101.93580 * 143.59946 * 18 16 15 20 20 C 1.37738 * 132.17454 * 164.14087 * 19 18 16 21 21 C 1.38355 * 119.97742 * 180.92064 * 20 19 18 22 22 C 1.38293 * 119.76398 * 359.97438 * 21 20 19 23 23 C 1.37932 * 120.35136 * 0.08852 * 22 21 20 24 24 C 1.38882 * 107.03438 * 344.66561 * 19 18 16 25 25 O 1.36135 * 111.23601 * 358.85277 * 24 19 18 26 26 H 1.09009 * 109.46715 * 300.00257 * 1 2 3 27 27 H 1.09003 * 109.47151 * 59.99650 * 1 2 3 28 28 H 1.08992 * 109.47585 * 180.02562 * 1 2 3 29 29 H 0.97003 * 120.00231 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47568 * 59.99408 * 15 14 12 31 31 H 1.09007 * 109.47275 * 299.99158 * 15 14 12 32 32 H 1.09004 * 110.93911 * 25.43610 * 18 16 15 33 33 H 1.09005 * 110.93948 * 261.75774 * 18 16 15 34 34 H 1.08001 * 120.01166 * 0.90173 * 20 19 18 35 35 H 1.07993 * 120.11968 * 180.02562 * 21 20 19 36 36 H 1.08002 * 119.81918 * 179.80445 * 22 21 20 37 37 H 1.08002 * 119.87461 * 179.73118 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3212 -1.1206 -4.0080 9 1 1.8256 -2.5203 -4.0077 10 1 1.8268 -0.4201 -5.2204 11 1 3.8062 -1.1212 -4.0081 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2277 -0.9857 3.5896 16 6 1.7566 -0.3185 4.8834 17 1 0.6686 -0.2573 4.9107 18 6 2.2982 -1.0753 6.1192 19 6 2.5739 0.0598 7.0862 20 6 2.7962 0.0834 8.4453 21 6 3.0075 1.2890 9.0904 22 6 2.9951 2.4668 8.3657 23 6 2.7714 2.4455 7.0048 24 6 2.5654 1.2354 6.3467 25 8 2.3437 0.9860 5.0269 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.7088 1.1612 -3.4844 30 1 3.3172 -0.9847 3.5565 31 1 1.8641 -2.0128 3.5570 32 1 3.2156 -1.6116 5.8764 33 1 1.5461 -1.7548 6.5204 34 1 2.8052 -0.8388 9.0073 35 1 3.1825 1.3102 10.1559 36 1 3.1568 3.4087 8.8689 37 1 2.7590 3.3703 6.4472 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342709002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:49 Heat of formation + Delta-G solvation = -98.484294 kcal Electronic energy + Delta-G solvation = -20530.657648 eV Core-core repulsion = 17238.361524 eV Total energy + Delta-G solvation = -3292.296125 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.29830 -39.53232 -37.63308 -35.73968 -33.88211 -33.08958 -30.94378 -30.26464 -30.17441 -26.40222 -25.19643 -23.14379 -22.59547 -21.87611 -21.59765 -19.78728 -17.72046 -16.99293 -16.86628 -16.17223 -16.08141 -15.65610 -15.45979 -14.90531 -14.31951 -14.05386 -13.71782 -13.34549 -13.25980 -12.84471 -12.79583 -12.48143 -12.03825 -11.92372 -11.85377 -11.50901 -11.04744 -11.02538 -10.84634 -10.79532 -10.69440 -10.34641 -10.11199 -10.05456 -9.13939 -9.09927 -9.04928 -8.44058 -8.29008 -6.09703 -4.15451 1.08164 1.19791 3.05161 3.28240 3.31345 3.33444 3.35872 3.43416 3.54663 4.17645 4.37711 4.47656 4.67538 4.79051 4.85496 4.96184 5.05441 5.18677 5.23345 5.31180 5.37793 5.45103 5.56638 5.69596 5.87097 6.10818 6.13751 6.23257 6.27288 6.45845 6.67353 6.87259 6.88475 7.07902 7.18378 7.44599 7.74654 7.94856 8.14551 8.82646 8.93389 9.49978 10.97703 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.043765 B = 0.003203 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.628084 B = 8738.662207 C = 9010.609711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.058 3.942 3 H 0.065 0.935 4 C -0.514 4.514 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.906 3.094 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.466 3.534 13 O -0.518 6.518 14 O -0.359 6.359 15 C 0.066 3.934 16 C 0.086 3.914 17 H 0.099 0.901 18 C -0.102 4.102 19 C -0.177 4.177 20 C -0.070 4.070 21 C -0.155 4.155 22 C -0.085 4.085 23 C -0.140 4.140 24 C 0.111 3.889 25 O -0.288 6.288 26 H 0.024 0.976 27 H 0.096 0.904 28 H 0.031 0.969 29 H 0.264 0.736 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.901 0.493 21.815 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.083 0.917 4 C -0.552 4.552 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.311 3.689 13 O -0.405 6.405 14 O -0.277 6.277 15 C -0.009 4.009 16 C 0.030 3.970 17 H 0.117 0.883 18 C -0.140 4.140 19 C -0.178 4.178 20 C -0.088 4.088 21 C -0.173 4.173 22 C -0.103 4.103 23 C -0.159 4.159 24 C 0.065 3.935 25 O -0.201 6.201 26 H 0.043 0.957 27 H 0.115 0.885 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.072 0.428 21.444 21.475 hybrid contribution 0.389 -0.682 -0.685 1.042 sum 1.460 -0.253 20.758 20.811 Atomic orbital electron populations 1.21736 0.95585 1.00007 1.01802 1.18764 0.94879 0.97043 0.85396 0.91713 1.21095 1.32027 1.13270 0.88802 0.90697 1.24936 0.94896 0.95011 0.99118 1.69872 1.36454 1.22757 1.23976 0.86426 0.79301 0.79642 0.81319 1.20091 1.21199 1.20079 1.25403 0.76503 0.83141 0.83831 1.90494 1.36456 1.26840 1.86743 1.86671 1.70179 1.55632 1.15203 1.22912 0.99849 0.95128 0.82979 1.23434 0.98868 0.80711 0.93983 0.88307 1.21756 1.02993 0.96842 0.92362 1.20769 1.07602 0.94443 0.95011 1.20289 0.98005 0.98402 0.92089 1.21009 1.04102 0.92194 0.99990 1.20882 0.98034 0.98611 0.92797 1.20336 1.05831 0.95570 0.94145 1.19706 0.95529 0.94403 0.83822 1.87022 1.76800 1.35728 1.20581 0.95736 0.88532 0.95000 0.92616 0.90719 0.89528 0.88667 0.88470 0.85851 0.85597 0.85222 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.90 37.16 0.33 -2.86 16 2 C 0.06 1.50 2.74 -92.92 -0.25 1.25 16 3 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 4 C -0.51 -14.59 8.37 -34.44 -0.29 -14.87 16 5 H 0.07 2.20 6.76 -52.48 -0.35 1.85 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.06 11.32 55.43 0.63 -24.43 16 8 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.47 11.14 7.25 36.01 0.26 11.41 16 13 O -0.52 -13.26 15.21 -18.75 -0.29 -13.55 16 14 O -0.36 -7.34 10.12 -40.80 -0.41 -7.75 16 15 C 0.07 1.05 5.14 37.16 0.19 1.24 16 16 C 0.09 1.14 3.92 -25.84 -0.10 1.04 16 17 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 18 C -0.10 -1.05 6.65 -26.52 -0.18 -1.23 16 19 C -0.18 -2.02 6.27 -104.10 -0.65 -2.68 16 20 C -0.07 -0.65 10.03 -39.72 -0.40 -1.05 16 21 C -0.15 -1.33 10.07 -39.52 -0.40 -1.72 16 22 C -0.09 -0.77 10.02 -39.67 -0.40 -1.17 16 23 C -0.14 -1.60 10.06 -39.30 -0.40 -2.00 16 24 C 0.11 1.49 7.04 -38.95 -0.27 1.22 16 25 O -0.29 -4.52 10.81 -20.54 -0.22 -4.74 16 26 H 0.02 0.51 8.11 -51.92 -0.42 0.09 16 27 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.07 1.21 8.13 -51.93 -0.42 0.78 16 31 H 0.09 1.23 8.13 -51.92 -0.42 0.81 16 32 H 0.10 0.91 7.92 -51.93 -0.41 0.50 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 318.32 15.07 4.80 4.80 Total: -1.00 -31.64 318.32 -8.03 -39.67 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -4.86 Total: -0.78 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -2.65 Total: -9.81 kcal Atomic # 7 Polarization: -25.06 SS G_CDS: 0.63 Total: -24.43 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.92 Total: -26.04 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.64 -8.03 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342709002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.814 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds