Wall clock time and date at job start Mon Mar 30 2020 02:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47507 * 2 1 4 4 C 1.50699 * 109.46920 * 239.99835 * 2 1 3 5 5 H 1.08005 * 119.99804 * 240.00549 * 4 2 1 6 6 C 1.37872 * 120.00267 * 59.99882 * 4 2 1 7 7 N 1.31515 * 119.99964 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00340 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47047 * 60.00245 * 8 6 4 10 10 H 1.48497 * 109.47086 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46716 * 300.00265 * 8 6 4 12 12 C 1.50706 * 109.47111 * 119.99930 * 2 1 3 13 13 O 1.20823 * 119.99622 * 119.99506 * 12 2 1 14 14 O 1.34224 * 119.99737 * 299.99988 * 12 2 1 15 15 C 1.45201 * 116.99592 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.47228 * 179.97438 * 15 14 12 17 17 H 1.09004 * 110.66922 * 56.75799 * 16 15 14 18 18 C 1.54702 * 110.75494 * 180.18309 * 16 15 14 19 19 C 1.51646 * 101.93580 * 143.59946 * 18 16 15 20 20 C 1.37738 * 132.17454 * 164.14087 * 19 18 16 21 21 C 1.38355 * 119.97742 * 180.92064 * 20 19 18 22 22 C 1.38293 * 119.76398 * 359.97438 * 21 20 19 23 23 C 1.37932 * 120.35136 * 0.08852 * 22 21 20 24 24 C 1.38882 * 107.03438 * 344.66561 * 19 18 16 25 25 O 1.36135 * 111.23601 * 358.85277 * 24 19 18 26 26 H 1.09009 * 109.46715 * 300.00257 * 1 2 3 27 27 H 1.09003 * 109.47151 * 59.99650 * 1 2 3 28 28 H 1.08992 * 109.47585 * 180.02562 * 1 2 3 29 29 H 0.97003 * 120.00231 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47568 * 59.99408 * 15 14 12 31 31 H 1.09007 * 109.47275 * 299.99158 * 15 14 12 32 32 H 1.09004 * 110.93911 * 25.43610 * 18 16 15 33 33 H 1.09005 * 110.93948 * 261.75774 * 18 16 15 34 34 H 1.08001 * 120.01166 * 0.90173 * 20 19 18 35 35 H 1.07993 * 120.11968 * 180.02562 * 21 20 19 36 36 H 1.08002 * 119.81918 * 179.80445 * 22 21 20 37 37 H 1.08002 * 119.87461 * 179.73118 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3212 -1.1206 -4.0080 9 1 1.8256 -2.5203 -4.0077 10 1 1.8268 -0.4201 -5.2204 11 1 3.8062 -1.1212 -4.0081 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2277 -0.9857 3.5896 16 6 1.7566 -0.3185 4.8834 17 1 0.6686 -0.2573 4.9107 18 6 2.2982 -1.0753 6.1192 19 6 2.5739 0.0598 7.0862 20 6 2.7962 0.0834 8.4453 21 6 3.0075 1.2890 9.0904 22 6 2.9951 2.4668 8.3657 23 6 2.7714 2.4455 7.0048 24 6 2.5654 1.2354 6.3467 25 8 2.3437 0.9860 5.0269 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.7088 1.1612 -3.4844 30 1 3.3172 -0.9847 3.5565 31 1 1.8641 -2.0128 3.5570 32 1 3.2156 -1.6116 5.8764 33 1 1.5461 -1.7548 6.5204 34 1 2.8052 -0.8388 9.0073 35 1 3.1825 1.3102 10.1559 36 1 3.1568 3.4087 8.8689 37 1 2.7590 3.3703 6.4472 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342709002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:48 Heat of formation + Delta-G solvation = -115.804780 kcal Electronic energy + Delta-G solvation = -20531.408721 eV Core-core repulsion = 17238.361524 eV Total energy + Delta-G solvation = -3293.047197 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.24030 -41.29064 -38.52364 -37.44060 -35.94582 -34.03078 -32.74999 -31.51143 -30.96698 -27.52030 -27.26850 -24.90520 -23.49487 -22.80265 -22.56290 -21.61520 -18.79969 -18.58658 -18.08644 -17.88360 -17.67902 -17.01154 -16.74153 -16.38064 -15.71096 -15.21787 -14.83980 -14.56567 -14.36691 -14.13202 -14.07031 -13.85284 -13.48368 -13.18428 -12.98240 -12.91196 -12.72887 -12.63161 -12.60201 -12.31161 -12.05815 -11.93473 -11.74387 -11.65901 -11.14286 -11.06852 -10.55037 -9.85002 -9.13913 -8.21296 -6.35441 0.32372 0.40862 1.38296 1.41758 1.44427 1.51682 1.76076 2.18264 2.42536 2.76007 3.08620 3.28618 3.45855 3.76024 3.85791 3.94974 4.13628 4.18533 4.25558 4.36667 4.41006 4.55656 4.63239 4.66585 4.77260 4.81848 4.87901 4.97323 5.10240 5.33413 5.39051 5.42382 5.45846 5.55097 5.66414 5.71357 5.86377 6.07795 6.22159 6.70813 6.98805 7.33530 8.85215 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.043765 B = 0.003203 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.628084 B = 8738.662207 C = 9010.609711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.049 3.951 3 H 0.047 0.953 4 C -0.541 4.541 5 H 0.058 0.942 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.966 3.034 9 H -0.271 1.271 10 H -0.274 1.274 11 H -0.274 1.274 12 C 0.474 3.526 13 O -0.540 6.540 14 O -0.361 6.361 15 C 0.061 3.939 16 C 0.085 3.915 17 H 0.106 0.894 18 C -0.092 4.092 19 C -0.185 4.185 20 C -0.073 4.073 21 C -0.148 4.148 22 C -0.086 4.086 23 C -0.158 4.158 24 C 0.068 3.932 25 O -0.325 6.325 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.032 0.968 29 H 0.269 0.731 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.127 0.873 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 -0.216 23.906 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.030 3.970 3 H 0.064 0.936 4 C -0.579 4.579 5 H 0.076 0.924 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.791 3.209 9 H -0.196 1.196 10 H -0.198 1.198 11 H -0.200 1.200 12 C 0.320 3.680 13 O -0.430 6.430 14 O -0.278 6.278 15 C -0.013 4.013 16 C 0.029 3.971 17 H 0.124 0.876 18 C -0.129 4.129 19 C -0.186 4.186 20 C -0.090 4.090 21 C -0.165 4.165 22 C -0.103 4.103 23 C -0.177 4.177 24 C 0.024 3.976 25 O -0.240 6.240 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.145 0.855 34 H 0.170 0.830 35 H 0.177 0.823 36 H 0.175 0.825 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.045 -0.262 23.567 23.591 hybrid contribution 0.417 -0.381 -1.166 1.296 sum 1.462 -0.643 22.400 22.457 Atomic orbital electron populations 1.21561 0.94197 1.00085 1.01964 1.18685 0.96091 0.95992 0.86205 0.93572 1.21235 1.32833 1.13392 0.90451 0.92388 1.25676 0.94834 0.95642 1.01669 1.69962 1.36601 1.23394 1.24882 0.85489 0.78677 0.78720 0.78057 1.19641 1.19839 1.19968 1.24846 0.76030 0.82507 0.84641 1.90469 1.37403 1.27745 1.87377 1.86604 1.69901 1.56043 1.15239 1.23309 0.99602 0.96155 0.82211 1.23502 0.99218 0.80724 0.93639 0.87626 1.21759 1.03976 0.96648 0.90521 1.20996 1.07840 0.93840 0.95937 1.20694 0.96957 1.00051 0.91331 1.21481 1.01967 0.91519 1.01566 1.21257 0.96924 1.00382 0.91770 1.20613 1.06492 0.95152 0.95442 1.20078 0.98191 0.96073 0.83292 1.86950 1.77698 1.36806 1.22545 0.93440 0.90357 0.94842 0.92192 0.91389 0.87592 0.88098 0.85498 0.83032 0.82319 0.82470 0.85534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.90 71.98 0.64 -5.17 16 2 C 0.05 2.62 2.74 -12.28 -0.03 2.58 16 3 H 0.05 2.59 8.14 -2.39 -0.02 2.57 16 4 C -0.54 -31.39 8.37 25.60 0.21 -31.18 16 5 H 0.06 3.50 6.76 -2.91 -0.02 3.48 16 6 C 0.02 1.21 5.30 84.65 0.45 1.66 16 7 N -0.91 -51.47 11.32 21.45 0.24 -51.23 16 8 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.47 23.13 7.25 71.24 0.52 23.65 16 13 O -0.54 -28.19 15.21 21.97 0.33 -27.85 16 14 O -0.36 -14.95 10.12 -49.87 -0.50 -15.45 16 15 C 0.06 1.93 5.14 71.98 0.37 2.30 16 16 C 0.08 2.23 3.92 31.17 0.12 2.35 16 17 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 18 C -0.09 -1.73 6.65 30.73 0.20 -1.53 16 19 C -0.19 -3.93 6.27 -19.53 -0.12 -4.06 16 20 C -0.07 -1.14 10.03 22.18 0.22 -0.91 16 21 C -0.15 -2.02 10.07 22.31 0.22 -1.80 16 22 C -0.09 -1.37 10.02 22.21 0.22 -1.15 16 23 C -0.16 -3.59 10.06 22.45 0.23 -3.37 16 24 C 0.07 1.84 7.04 22.68 0.16 2.00 16 25 O -0.32 -10.52 10.81 -94.73 -1.02 -11.54 16 26 H 0.05 2.01 8.11 -2.38 -0.02 1.99 16 27 H 0.08 4.08 6.07 -2.39 -0.01 4.06 16 28 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 31 H 0.11 2.92 8.13 -2.38 -0.02 2.90 16 32 H 0.10 1.76 7.92 -2.38 -0.02 1.74 16 33 H 0.13 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -69.44 318.32 5.56 -63.88 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 1.07 Total: 10.46 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 3.42 Total: -14.61 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.24 Total: -51.23 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -1.19 Total: -54.85 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -69.44 5.56 -63.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342709002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.924 kcal (2) G-P(sol) polarization free energy of solvation -69.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds