Wall clock time and date at job start Mon Mar 30 2020 01:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46493 * 109.47129 * 2 1 4 4 N 1.28713 * 126.03570 * 274.85003 * 3 2 1 5 5 N 1.28516 * 110.64792 * 180.02562 * 4 3 2 6 6 C 1.33326 * 109.43275 * 359.72843 * 5 4 3 7 7 C 1.37021 * 106.36940 * 0.42774 * 6 5 4 8 8 C 1.47209 * 127.19083 * 179.84356 * 7 6 5 9 9 O 1.21643 * 120.00193 * 185.00574 * 8 7 6 10 10 N 1.34782 * 119.99707 * 5.00874 * 8 7 6 11 11 C 1.40522 * 119.99990 * 174.81468 * 10 8 7 12 12 C 1.40673 * 126.08375 * 0.02562 * 11 10 8 13 13 N 1.30903 * 108.38387 * 179.97438 * 12 11 10 14 14 N 1.40063 * 108.41660 * 0.02562 * 13 12 11 15 15 C 1.37309 * 126.06915 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00593 * 180.02562 * 15 14 13 17 17 C 1.38993 * 120.00148 * 0.04737 * 15 14 13 18 18 N 1.31295 * 119.99500 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00309 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46934 * 59.99914 * 19 17 15 21 21 H 1.48497 * 109.47253 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46978 * 300.00036 * 19 17 15 23 23 C 1.35696 * 126.08552 * 179.97438 * 11 10 8 24 24 H 1.09003 * 109.47036 * 299.99643 * 1 2 3 25 25 H 1.08998 * 109.47735 * 60.00214 * 1 2 3 26 26 H 1.09004 * 109.47485 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46862 * 239.99831 * 2 1 3 28 28 H 1.09004 * 109.47458 * 120.00122 * 2 1 3 29 29 H 1.07999 * 126.81774 * 180.31217 * 6 5 4 30 30 H 0.96995 * 120.00131 * 354.80909 * 10 8 7 31 31 H 1.08005 * 125.80540 * 359.70650 * 12 11 10 32 32 H 0.97007 * 119.99667 * 180.02562 * 18 17 15 33 33 H 1.07997 * 126.25045 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 7 2.1877 2.1244 -1.0371 5 7 2.6284 3.2828 -0.6974 6 6 2.7605 3.3359 0.6283 7 6 2.3759 2.1098 1.1041 8 6 2.3470 1.6694 2.5084 9 8 2.0674 0.5168 2.7788 10 7 2.6302 2.5433 3.4947 11 6 2.4970 2.1539 4.8383 12 6 2.0808 0.8910 5.2974 13 7 2.0812 0.9069 6.6064 14 7 2.4953 2.1750 7.0333 15 6 2.6249 2.5867 8.3368 16 1 2.9532 3.5920 8.5556 17 6 2.3341 1.7094 9.3750 18 7 1.9349 0.4872 9.1091 19 14 2.5112 2.2692 11.1483 20 1 1.6132 3.4262 11.3941 21 1 2.1426 1.1551 12.0582 22 1 3.9178 2.6716 11.4022 23 6 2.7477 2.9287 5.9237 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.1044 4.1774 1.2113 30 1 2.9261 3.4410 3.2770 31 1 1.8035 0.0525 4.6757 32 1 1.7316 -0.1250 9.8336 33 1 3.0849 3.9546 5.9117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343895422.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:21 Heat of formation + Delta-G solvation = 149.359758 kcal Electronic energy + Delta-G solvation = -20503.780970 eV Core-core repulsion = 17183.277329 eV Total energy + Delta-G solvation = -3320.503641 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.30324 -40.00193 -38.60130 -35.62658 -34.33825 -33.33096 -31.45821 -30.86846 -30.29143 -27.89640 -25.34927 -24.61872 -23.60792 -22.20422 -21.14335 -20.20454 -19.56059 -17.98595 -17.50093 -16.68493 -16.30224 -15.54788 -15.40638 -14.92799 -14.61793 -14.39853 -14.05221 -13.77337 -13.25571 -13.08111 -13.00113 -12.41476 -12.07583 -11.77931 -11.74147 -11.51185 -11.31135 -11.04981 -11.00856 -10.61374 -10.37803 -10.26443 -9.58113 -9.49308 -9.26311 -8.92928 -8.17385 -6.84372 -6.64245 -4.32181 0.96263 2.07323 2.28304 2.88453 3.00209 3.04600 3.12970 3.33281 3.62020 3.79031 4.27871 4.31304 4.45250 4.63770 4.72011 4.82256 4.94156 4.99735 5.07444 5.29161 5.40636 5.72925 5.86604 5.91662 6.14195 6.29300 6.39797 6.72178 6.83515 6.92113 7.11919 7.74729 7.94070 8.12653 8.30584 8.43123 8.64309 9.26514 9.55118 10.31433 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.042135 B = 0.003704 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.368397 B = 7557.412462 C = 8110.867278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.101 3.899 3 N -0.253 5.253 4 N -0.069 5.069 5 N -0.277 5.277 6 C -0.011 4.011 7 C -0.051 4.051 8 C 0.574 3.426 9 O -0.532 6.532 10 N -0.598 5.598 11 C -0.065 4.065 12 C -0.028 4.028 13 N -0.261 5.261 14 N -0.138 5.138 15 C -0.323 4.323 16 H 0.118 0.882 17 C 0.047 3.953 18 N -0.768 5.768 19 Si 0.936 3.064 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.266 1.266 23 C -0.079 4.079 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.129 0.871 29 H 0.197 0.803 30 H 0.401 0.599 31 H 0.176 0.824 32 H 0.276 0.724 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.102 2.528 -11.140 11.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.019 4.019 3 N -0.050 5.050 4 N -0.049 5.049 5 N -0.140 5.140 6 C -0.171 4.171 7 C -0.186 4.186 8 C 0.358 3.642 9 O -0.410 6.410 10 N -0.240 5.240 11 C -0.171 4.171 12 C -0.203 4.203 13 N -0.091 5.091 14 N 0.095 4.905 15 C -0.455 4.455 16 H 0.135 0.865 17 C -0.171 4.171 18 N -0.394 5.394 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.191 1.191 23 C -0.231 4.231 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.122 0.878 28 H 0.147 0.853 29 H 0.214 0.786 30 H 0.235 0.765 31 H 0.193 0.807 32 H 0.087 0.913 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.737 0.848 -11.301 11.357 hybrid contribution 0.482 1.158 0.993 1.600 sum -0.255 2.007 -10.308 10.505 Atomic orbital electron populations 1.22090 0.92739 1.04061 1.03346 1.22481 0.96780 0.75701 1.06964 1.47834 1.40012 1.13577 1.03596 1.78201 1.16544 0.98248 1.11929 1.74855 1.15417 1.11070 1.12616 1.23868 1.04035 0.97135 0.92076 1.22073 1.11099 0.94056 0.91355 1.16448 0.80214 0.85606 0.81956 1.90677 1.49920 1.17672 1.82723 1.42052 1.63613 1.14513 1.03791 1.17176 1.21901 0.96958 0.81041 1.24099 1.06387 0.96967 0.92868 1.78281 1.22938 0.98703 1.09215 1.44566 1.35136 1.06688 1.04120 1.19878 1.47678 0.99986 0.77961 0.86477 1.25656 0.95300 0.94917 1.01199 1.70201 1.31436 1.04032 1.33736 0.85875 0.79482 0.78830 0.79886 1.19087 1.20085 1.19080 1.21258 1.17325 0.98323 0.86157 0.91279 0.91726 0.89513 0.87814 0.85283 0.78648 0.76502 0.80705 0.91288 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 10.24 37.16 0.38 -1.20 16 2 C 0.10 1.08 6.79 -4.05 -0.03 1.06 16 3 N -0.25 -3.42 3.39 -57.38 -0.19 -3.62 16 4 N -0.07 -1.00 13.14 60.35 0.79 -0.21 16 5 N -0.28 -4.02 12.35 30.48 0.38 -3.64 16 6 C -0.01 -0.13 11.55 -17.34 -0.20 -0.33 16 7 C -0.05 -0.72 6.98 -82.34 -0.57 -1.29 16 8 C 0.57 9.48 7.76 -12.61 -0.10 9.39 16 9 O -0.53 -10.14 11.91 5.24 0.06 -10.07 16 10 N -0.60 -9.84 5.45 -11.03 -0.06 -9.90 16 11 C -0.07 -1.40 6.90 -83.86 -0.58 -1.98 16 12 C -0.03 -0.68 10.85 -17.03 -0.18 -0.87 16 13 N -0.26 -7.25 10.39 30.81 0.32 -6.93 16 14 N -0.14 -3.63 3.74 -11.41 -0.04 -3.67 16 15 C -0.32 -8.20 10.25 -14.82 -0.15 -8.35 16 16 H 0.12 2.63 7.83 -52.49 -0.41 2.22 16 17 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 18 N -0.77 -20.74 11.81 55.50 0.66 -20.08 16 19 Si 0.94 18.23 29.55 -169.99 -5.02 13.21 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 21 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 23 C -0.08 -1.76 11.49 -16.38 -0.19 -1.94 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.13 1.54 6.11 -51.93 -0.32 1.22 16 29 H 0.20 1.66 7.56 -52.49 -0.40 1.26 16 30 H 0.40 4.94 7.86 -40.82 -0.32 4.62 16 31 H 0.18 4.22 5.93 -52.48 -0.31 3.91 16 32 H 0.28 6.84 8.31 -40.82 -0.34 6.51 16 33 H 0.15 2.68 8.06 -52.49 -0.42 2.26 16 LS Contribution 295.58 15.07 4.45 4.45 Total: -1.00 -32.54 295.58 -3.38 -35.92 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -3.01 Total: 8.99 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -1.72 Total: -4.46 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 1.85 Total: -48.04 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.06 Total: -10.07 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.02 Total: 13.21 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.54 -3.38 -35.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343895422.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.281 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds