Wall clock time and date at job start Mon Mar 30 2020 01:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46493 * 109.47129 * 2 1 4 4 N 1.28713 * 126.03570 * 274.85003 * 3 2 1 5 5 N 1.28516 * 110.64792 * 180.02562 * 4 3 2 6 6 C 1.33326 * 109.43275 * 359.72843 * 5 4 3 7 7 C 1.37021 * 106.36940 * 0.42774 * 6 5 4 8 8 C 1.47209 * 127.19083 * 179.84356 * 7 6 5 9 9 O 1.21643 * 120.00193 * 185.00574 * 8 7 6 10 10 N 1.34782 * 119.99707 * 5.00874 * 8 7 6 11 11 C 1.40522 * 119.99990 * 174.81468 * 10 8 7 12 12 C 1.40673 * 126.08375 * 0.02562 * 11 10 8 13 13 N 1.30903 * 108.38387 * 179.97438 * 12 11 10 14 14 N 1.40063 * 108.41660 * 0.02562 * 13 12 11 15 15 C 1.37309 * 126.06915 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00593 * 180.02562 * 15 14 13 17 17 C 1.38993 * 120.00148 * 0.04737 * 15 14 13 18 18 N 1.31295 * 119.99500 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00309 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46934 * 59.99914 * 19 17 15 21 21 H 1.48497 * 109.47253 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46978 * 300.00036 * 19 17 15 23 23 C 1.35696 * 126.08552 * 179.97438 * 11 10 8 24 24 H 1.09003 * 109.47036 * 299.99643 * 1 2 3 25 25 H 1.08998 * 109.47735 * 60.00214 * 1 2 3 26 26 H 1.09004 * 109.47485 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46862 * 239.99831 * 2 1 3 28 28 H 1.09004 * 109.47458 * 120.00122 * 2 1 3 29 29 H 1.07999 * 126.81774 * 180.31217 * 6 5 4 30 30 H 0.96995 * 120.00131 * 354.80909 * 10 8 7 31 31 H 1.08005 * 125.80540 * 359.70650 * 12 11 10 32 32 H 0.97007 * 119.99667 * 180.02562 * 18 17 15 33 33 H 1.07997 * 126.25045 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 7 2.1877 2.1244 -1.0371 5 7 2.6284 3.2828 -0.6974 6 6 2.7605 3.3359 0.6283 7 6 2.3759 2.1098 1.1041 8 6 2.3470 1.6694 2.5084 9 8 2.0674 0.5168 2.7788 10 7 2.6302 2.5433 3.4947 11 6 2.4970 2.1539 4.8383 12 6 2.0808 0.8910 5.2974 13 7 2.0812 0.9069 6.6064 14 7 2.4953 2.1750 7.0333 15 6 2.6249 2.5867 8.3368 16 1 2.9532 3.5920 8.5556 17 6 2.3341 1.7094 9.3750 18 7 1.9349 0.4872 9.1091 19 14 2.5112 2.2692 11.1483 20 1 1.6132 3.4262 11.3941 21 1 2.1426 1.1551 12.0582 22 1 3.9178 2.6716 11.4022 23 6 2.7477 2.9287 5.9237 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.1044 4.1774 1.2113 30 1 2.9261 3.4410 3.2770 31 1 1.8035 0.0525 4.6757 32 1 1.7316 -0.1250 9.8336 33 1 3.0849 3.9546 5.9117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343895422.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:21 Heat of formation + Delta-G solvation = 125.584144 kcal Electronic energy + Delta-G solvation = -20504.811958 eV Core-core repulsion = 17183.277329 eV Total energy + Delta-G solvation = -3321.534629 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.37959 -41.70560 -40.14190 -36.67832 -35.84565 -35.03335 -32.72510 -32.09576 -31.80059 -29.59660 -27.00869 -25.77073 -24.77728 -23.36722 -22.84752 -21.51919 -21.25784 -19.48406 -18.88757 -17.85675 -17.43953 -17.36069 -16.92277 -16.09533 -16.01562 -15.67402 -15.40490 -15.04792 -14.91864 -14.77768 -13.94952 -13.48458 -13.35830 -13.18438 -13.14423 -12.88209 -12.86445 -12.62185 -12.12793 -12.00193 -11.91987 -11.29697 -11.04269 -10.98966 -10.79462 -10.59702 -10.09350 -8.56055 -8.45709 -6.23108 -0.16470 1.03491 1.17101 1.34243 1.42507 1.58038 1.71227 1.96970 2.00138 2.22221 2.55593 2.85871 3.11078 3.32717 3.49710 3.68308 3.89182 3.98494 4.25743 4.34639 4.46590 4.58071 4.62839 4.83632 4.97755 5.01353 5.05376 5.07457 5.28851 5.35635 5.37957 5.96141 6.28574 6.55744 6.73584 7.14379 7.25602 7.46247 7.68208 8.53191 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.042135 B = 0.003704 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.368397 B = 7557.412462 C = 8110.867278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.093 3.907 3 N -0.249 5.249 4 N -0.075 5.075 5 N -0.298 5.298 6 C 0.012 3.988 7 C -0.070 4.070 8 C 0.582 3.418 9 O -0.559 6.559 10 N -0.590 5.590 11 C -0.048 4.048 12 C -0.051 4.051 13 N -0.311 5.311 14 N -0.167 5.167 15 C -0.354 4.354 16 H 0.142 0.858 17 C -0.004 4.004 18 N -0.824 5.824 19 Si 1.017 2.983 20 H -0.254 1.254 21 H -0.280 1.280 22 H -0.254 1.254 23 C -0.072 4.072 24 H 0.044 0.956 25 H 0.069 0.931 26 H 0.109 0.891 27 H 0.131 0.869 28 H 0.115 0.885 29 H 0.237 0.763 30 H 0.424 0.576 31 H 0.172 0.828 32 H 0.276 0.724 33 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.553 4.606 -11.844 12.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.026 4.026 3 N -0.047 5.047 4 N -0.055 5.055 5 N -0.160 5.160 6 C -0.149 4.149 7 C -0.205 4.205 8 C 0.367 3.633 9 O -0.438 6.438 10 N -0.235 5.235 11 C -0.154 4.154 12 C -0.227 4.227 13 N -0.143 5.143 14 N 0.065 4.935 15 C -0.485 4.485 16 H 0.160 0.840 17 C -0.216 4.216 18 N -0.451 5.451 19 Si 0.836 3.164 20 H -0.178 1.178 21 H -0.205 1.205 22 H -0.178 1.178 23 C -0.223 4.223 24 H 0.063 0.937 25 H 0.088 0.912 26 H 0.128 0.872 27 H 0.149 0.851 28 H 0.134 0.866 29 H 0.253 0.747 30 H 0.262 0.738 31 H 0.189 0.811 32 H 0.086 0.914 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.070 2.968 -12.058 12.418 hybrid contribution 0.279 0.510 0.956 1.118 sum 0.209 3.478 -11.102 11.636 Atomic orbital electron populations 1.22060 0.91859 1.05306 1.02317 1.22712 0.97475 0.74729 1.07644 1.48114 1.39165 1.14185 1.03247 1.78184 1.16646 0.98574 1.12133 1.74871 1.16303 1.11215 1.13582 1.24523 1.01564 0.97299 0.91499 1.21773 1.13405 0.95087 0.90188 1.16720 0.78699 0.85038 0.82851 1.90677 1.50636 1.19087 1.83408 1.41862 1.64087 1.15768 1.01742 1.17180 1.19545 0.95433 0.83230 1.24205 1.07495 0.98480 0.92494 1.78175 1.24619 1.00743 1.10718 1.44827 1.36648 1.06710 1.05331 1.20595 1.48395 1.01321 0.78220 0.84041 1.26827 0.94160 0.94609 1.05989 1.70382 1.33847 1.05774 1.35132 0.84681 0.80040 0.78304 0.73397 1.17778 1.20463 1.17785 1.22025 1.15346 0.99774 0.85118 0.93675 0.91173 0.87226 0.85059 0.86646 0.74724 0.73783 0.81124 0.91415 0.79105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 10.24 71.98 0.74 -2.13 16 2 C 0.09 1.90 6.79 86.38 0.59 2.49 16 3 N -0.25 -6.34 3.39 -335.45 -1.14 -7.48 16 4 N -0.08 -2.03 13.14 37.02 0.49 -1.55 16 5 N -0.30 -7.92 12.35 -57.49 -0.71 -8.63 16 6 C 0.01 0.26 11.55 84.18 0.97 1.24 16 7 C -0.07 -1.83 6.98 40.40 0.28 -1.55 16 8 C 0.58 18.50 7.76 86.60 0.67 19.18 16 9 O -0.56 -21.38 11.91 -4.17 -0.05 -21.43 16 10 N -0.59 -18.15 5.45 -307.05 -1.67 -19.83 16 11 C -0.05 -2.01 6.90 37.75 0.26 -1.75 16 12 C -0.05 -2.60 10.85 85.43 0.93 -1.67 16 13 N -0.31 -17.88 10.39 -56.45 -0.59 -18.47 16 14 N -0.17 -8.80 3.74 -190.00 -0.71 -9.51 16 15 C -0.35 -17.98 10.25 84.02 0.86 -17.12 16 16 H 0.14 6.15 7.83 -2.91 -0.02 6.13 16 17 C 0.00 -0.20 5.50 84.95 0.47 0.27 16 18 N -0.82 -46.14 11.81 21.66 0.26 -45.89 16 19 Si 1.02 37.24 29.55 68.60 2.03 39.27 16 20 H -0.25 -8.69 7.11 99.48 0.71 -7.98 16 21 H -0.28 -10.23 7.11 99.48 0.71 -9.53 16 22 H -0.25 -8.69 7.11 99.48 0.71 -7.99 16 23 C -0.07 -3.07 11.49 83.38 0.96 -2.12 16 24 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.12 2.73 6.11 -2.38 -0.01 2.71 16 29 H 0.24 2.89 7.56 -2.91 -0.02 2.87 16 30 H 0.42 8.92 7.86 -92.71 -0.73 8.20 16 31 H 0.17 8.60 5.93 -2.91 -0.02 8.59 16 32 H 0.28 14.29 8.31 -92.70 -0.77 13.52 16 33 H 0.19 6.22 8.06 -2.91 -0.02 6.20 16 Total: -1.00 -73.49 295.58 5.07 -68.42 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.44 Total: 28.25 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 6.72 Total: -3.17 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -4.08 Total: -111.35 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.05 Total: -21.43 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Total: -73.49 5.07 -68.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343895422.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.006 kcal (2) G-P(sol) polarization free energy of solvation -73.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds