Wall clock time and date at job start Mon Mar 30 2020 01:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38363 * 119.85363 * 2 1 4 4 C 1.37945 * 120.15556 * 179.74406 * 3 2 1 5 5 C 1.39628 * 119.84484 * 0.25356 * 4 3 2 6 6 C 1.47725 * 120.15017 * 179.97438 * 5 4 3 7 7 O 1.21473 * 120.00063 * 354.55025 * 6 5 4 8 8 O 1.34711 * 120.00120 * 174.54309 * 6 5 4 9 9 C 1.45203 * 117.00047 * 185.18252 * 8 6 5 10 10 C 1.53005 * 109.46948 * 184.51810 * 9 8 6 11 11 C 1.50700 * 113.00240 * 289.47783 * 10 9 8 12 12 H 1.07995 * 119.99455 * 121.05929 * 11 10 9 13 13 C 1.37872 * 119.99889 * 301.06435 * 11 10 9 14 14 N 1.31516 * 119.99831 * 175.72032 * 13 11 10 15 15 Si 1.86800 * 120.00277 * 355.71573 * 13 11 10 16 16 H 1.48500 * 109.47212 * 92.04192 * 15 13 11 17 17 H 1.48497 * 109.47372 * 212.04263 * 15 13 11 18 18 H 1.48505 * 109.47127 * 332.04657 * 15 13 11 19 19 C 1.54033 * 113.81474 * 157.49126 * 10 9 8 20 20 O 1.44178 * 85.51841 * 223.19668 * 19 10 9 21 21 C 1.44173 * 93.33933 * 24.19519 * 20 19 10 22 22 C 1.39630 * 119.70165 * 0.02562 * 5 4 3 23 23 C 1.37949 * 119.84806 * 359.97438 * 22 5 4 24 24 H 1.09002 * 109.46665 * 90.00064 * 1 2 3 25 25 H 1.08989 * 109.47188 * 210.00251 * 1 2 3 26 26 H 1.09003 * 109.46669 * 330.00719 * 1 2 3 27 27 H 1.08007 * 119.92573 * 0.02562 * 3 2 1 28 28 H 1.08003 * 120.07942 * 180.27345 * 4 3 2 29 29 H 1.09002 * 109.46838 * 304.51752 * 9 8 6 30 30 H 1.08996 * 109.47240 * 64.52327 * 9 8 6 31 31 H 0.96998 * 119.99720 * 180.02562 * 14 13 11 32 32 H 1.09001 * 113.86473 * 337.34290 * 19 10 9 33 33 H 1.08997 * 113.86483 * 109.05086 * 19 10 9 34 34 H 1.09002 * 113.86305 * 221.66051 * 21 20 19 35 35 H 1.09000 * 113.98805 * 89.96944 * 21 20 19 36 36 H 1.08001 * 120.07739 * 179.97438 * 22 5 4 37 37 H 1.07997 * 119.92462 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5752 1.2073 0.0053 5 6 4.2764 -0.0001 0.0054 6 6 5.7536 -0.0002 0.0105 7 8 6.3614 1.0472 -0.0852 8 8 6.4268 -1.1618 0.1215 9 6 7.8718 -1.0779 0.2360 10 6 8.4659 -2.4879 0.2383 11 6 8.1689 -3.2501 1.5039 12 1 7.6333 -4.1867 1.4571 13 6 8.5807 -2.7515 2.7216 14 7 8.2491 -3.3724 3.8325 15 14 9.6098 -1.1942 2.7935 16 1 8.7167 -0.0172 2.9428 17 1 10.5339 -1.2647 3.9537 18 1 10.3968 -1.0626 1.5410 19 6 9.9445 -2.5406 -0.1902 20 8 9.5614 -3.6941 -0.9656 21 6 8.1815 -3.2848 -1.0490 22 6 3.5751 -1.2075 -0.0005 23 6 2.1956 -1.2002 -0.0058 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 1.6521 2.1333 0.0004 28 1 4.1115 2.1447 0.0098 29 1 8.2713 -0.5167 -0.6088 30 1 8.1339 -0.5718 1.1651 31 1 8.5385 -3.0214 4.6892 32 1 10.2596 -1.6888 -0.7930 33 1 10.6321 -2.7658 0.6250 34 1 7.4708 -4.1002 -0.9148 35 1 7.9560 -2.6603 -1.9134 36 1 4.1114 -2.1450 -0.0010 37 1 1.6519 -2.1333 -0.0100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344155803.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:34 Heat of formation + Delta-G solvation = -66.702980 kcal Electronic energy + Delta-G solvation = -21195.003312 eV Core-core repulsion = 17904.085329 eV Total energy + Delta-G solvation = -3290.917983 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.31386 -39.55262 -38.66615 -35.91480 -33.10821 -32.84766 -31.08288 -30.61755 -27.80668 -25.80990 -25.34783 -24.47826 -22.67337 -22.62804 -20.40738 -19.06466 -17.70185 -17.06787 -16.26735 -16.04207 -15.41025 -15.30526 -15.07460 -14.88027 -14.58096 -14.06125 -13.99165 -13.80560 -13.53551 -13.02329 -12.82755 -12.50449 -12.34591 -12.00996 -11.91216 -11.63854 -11.07644 -10.97351 -10.67662 -10.48572 -10.38071 -10.19727 -9.93910 -9.54796 -9.20598 -9.04065 -8.84311 -8.81151 -8.53621 -6.24517 -4.24840 0.75259 1.33532 2.74754 3.09337 3.14354 3.20206 3.27079 3.81575 4.22647 4.58823 4.63999 4.72552 4.90312 4.96914 5.04645 5.15561 5.32863 5.36610 5.53054 5.60010 5.63447 5.67000 5.87428 5.93280 5.94169 5.95103 6.02411 6.05433 6.26327 6.36824 6.44711 6.53397 6.57411 6.82340 6.92651 7.00400 7.02902 7.51664 8.17336 8.33981 8.79992 9.34666 10.87660 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021269 B = 0.005032 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.147805 B = 5562.658508 C = 5740.601260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.059 4.059 3 C -0.138 4.138 4 C -0.055 4.055 5 C -0.124 4.124 6 C 0.500 3.500 7 O -0.521 6.521 8 O -0.323 6.323 9 C 0.071 3.929 10 C -0.008 4.008 11 C -0.486 4.486 12 H 0.086 0.914 13 C 0.079 3.921 14 N -0.885 5.885 15 Si 0.858 3.142 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.252 1.252 19 C 0.032 3.968 20 O -0.378 6.378 21 C 0.048 3.952 22 C -0.052 4.052 23 C -0.135 4.135 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.128 0.872 28 H 0.135 0.865 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.267 0.733 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.145 0.855 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.389 7.256 -7.961 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.059 4.059 3 C -0.155 4.155 4 C -0.073 4.073 5 C -0.125 4.125 6 C 0.345 3.655 7 O -0.412 6.412 8 O -0.238 6.238 9 C -0.002 4.002 10 C -0.009 4.009 11 C -0.523 4.523 12 H 0.104 0.896 13 C -0.125 4.125 14 N -0.522 5.522 15 Si 0.686 3.314 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.176 1.176 19 C -0.045 4.045 20 O -0.296 6.296 21 C -0.029 4.029 22 C -0.070 4.070 23 C -0.153 4.153 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.146 0.854 28 H 0.153 0.847 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.163 0.837 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.002 7.279 -7.874 16.095 hybrid contribution 0.668 1.234 0.393 1.458 sum -11.334 8.514 -7.481 16.028 Atomic orbital electron populations 1.20862 0.90927 1.03113 1.02549 1.20196 0.96327 0.93252 0.96148 1.20937 0.93510 0.97843 1.03257 1.21252 0.93998 0.97381 0.94691 1.19234 0.89719 0.94960 1.08619 1.21269 0.88845 0.82471 0.72935 1.90772 1.70405 1.33255 1.46765 1.86587 1.23254 1.32097 1.81847 1.23846 0.75220 1.00940 1.00229 1.21679 0.91369 0.90482 0.97408 1.20396 1.37204 1.07857 0.86875 0.89635 1.24918 0.95375 0.96583 0.95579 1.69856 1.44688 1.39845 0.97763 0.87360 0.81175 0.84085 0.78782 1.20288 1.21154 1.17631 1.24432 0.98771 0.87709 0.93638 1.89547 1.23411 1.41253 1.75415 1.23838 0.84884 0.98126 0.96085 1.21632 0.94218 0.98156 0.92998 1.21068 0.93921 0.97865 1.02457 0.90815 0.91147 0.91333 0.85360 0.84702 0.92808 0.92136 0.92259 0.92619 0.89236 0.89502 0.92302 0.83703 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.00 36.00 0.36 -0.48 16 2 C -0.06 -0.62 5.89 -104.53 -0.62 -1.23 16 3 C -0.14 -1.51 9.68 -39.64 -0.38 -1.90 16 4 C -0.06 -0.75 9.60 -39.17 -0.38 -1.13 16 5 C -0.12 -2.00 5.87 -104.98 -0.62 -2.62 16 6 C 0.50 9.83 7.88 34.61 0.27 10.10 16 7 O -0.52 -11.14 16.07 -19.25 -0.31 -11.45 16 8 O -0.32 -6.84 9.28 -40.52 -0.38 -7.22 16 9 C 0.07 1.58 4.43 37.16 0.16 1.74 16 10 C -0.01 -0.19 0.45 -154.58 -0.07 -0.26 16 11 C -0.49 -13.15 8.89 -34.44 -0.31 -13.46 16 12 H 0.09 2.52 8.04 -52.49 -0.42 2.10 16 13 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 14 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 15 Si 0.86 20.71 23.67 -169.99 -4.02 16.69 16 16 H -0.28 -6.80 6.84 56.52 0.39 -6.42 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.25 -5.52 5.04 56.52 0.28 -5.24 16 19 C 0.03 0.69 6.40 37.61 0.24 0.93 16 20 O -0.38 -8.46 12.40 -35.23 -0.44 -8.89 16 21 C 0.05 0.97 8.19 37.61 0.31 1.28 16 22 C -0.05 -0.74 9.62 -39.17 -0.38 -1.12 16 23 C -0.14 -1.56 9.68 -39.64 -0.38 -1.94 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.45 8.08 -51.94 -0.42 0.03 16 26 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 28 H 0.14 1.79 7.66 -52.48 -0.40 1.39 16 29 H 0.05 1.08 7.80 -51.93 -0.41 0.68 16 30 H 0.06 1.44 3.83 -51.93 -0.20 1.25 16 31 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.06 1.06 7.97 -51.93 -0.41 0.64 16 33 H 0.09 1.98 6.55 -51.93 -0.34 1.64 16 34 H 0.09 1.74 8.08 -51.93 -0.42 1.32 16 35 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 36 H 0.15 2.09 7.62 -52.49 -0.40 1.69 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 310.77 15.07 4.68 4.68 Total: -1.00 -31.43 310.77 -6.36 -37.80 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -4.80 Total: 1.78 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.88 Total: -7.98 kcal Atomic # 7 Polarization: -26.18 SS G_CDS: 0.77 Total: -25.41 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -1.12 Total: -27.56 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.02 Total: 16.69 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.43 -6.36 -37.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344155803.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.906 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds