Wall clock time and date at job start Mon Mar 30 2020 01:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38363 * 119.85363 * 2 1 4 4 C 1.37945 * 120.15556 * 179.74406 * 3 2 1 5 5 C 1.39628 * 119.84484 * 0.25356 * 4 3 2 6 6 C 1.47725 * 120.15017 * 179.97438 * 5 4 3 7 7 O 1.21473 * 120.00063 * 354.55025 * 6 5 4 8 8 O 1.34711 * 120.00120 * 174.54309 * 6 5 4 9 9 C 1.45203 * 117.00047 * 185.18252 * 8 6 5 10 10 C 1.53005 * 109.46948 * 184.51810 * 9 8 6 11 11 C 1.50700 * 113.00240 * 289.47783 * 10 9 8 12 12 H 1.07995 * 119.99455 * 121.05929 * 11 10 9 13 13 C 1.37872 * 119.99889 * 301.06435 * 11 10 9 14 14 N 1.31516 * 119.99831 * 175.72032 * 13 11 10 15 15 Si 1.86800 * 120.00277 * 355.71573 * 13 11 10 16 16 H 1.48500 * 109.47212 * 92.04192 * 15 13 11 17 17 H 1.48497 * 109.47372 * 212.04263 * 15 13 11 18 18 H 1.48505 * 109.47127 * 332.04657 * 15 13 11 19 19 C 1.54033 * 113.81474 * 157.49126 * 10 9 8 20 20 O 1.44178 * 85.51841 * 223.19668 * 19 10 9 21 21 C 1.44173 * 93.33933 * 24.19519 * 20 19 10 22 22 C 1.39630 * 119.70165 * 0.02562 * 5 4 3 23 23 C 1.37949 * 119.84806 * 359.97438 * 22 5 4 24 24 H 1.09002 * 109.46665 * 90.00064 * 1 2 3 25 25 H 1.08989 * 109.47188 * 210.00251 * 1 2 3 26 26 H 1.09003 * 109.46669 * 330.00719 * 1 2 3 27 27 H 1.08007 * 119.92573 * 0.02562 * 3 2 1 28 28 H 1.08003 * 120.07942 * 180.27345 * 4 3 2 29 29 H 1.09002 * 109.46838 * 304.51752 * 9 8 6 30 30 H 1.08996 * 109.47240 * 64.52327 * 9 8 6 31 31 H 0.96998 * 119.99720 * 180.02562 * 14 13 11 32 32 H 1.09001 * 113.86473 * 337.34290 * 19 10 9 33 33 H 1.08997 * 113.86483 * 109.05086 * 19 10 9 34 34 H 1.09002 * 113.86305 * 221.66051 * 21 20 19 35 35 H 1.09000 * 113.98805 * 89.96944 * 21 20 19 36 36 H 1.08001 * 120.07739 * 179.97438 * 22 5 4 37 37 H 1.07997 * 119.92462 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5752 1.2073 0.0053 5 6 4.2764 -0.0001 0.0054 6 6 5.7536 -0.0002 0.0105 7 8 6.3614 1.0472 -0.0852 8 8 6.4268 -1.1618 0.1215 9 6 7.8718 -1.0779 0.2360 10 6 8.4659 -2.4879 0.2383 11 6 8.1689 -3.2501 1.5039 12 1 7.6333 -4.1867 1.4571 13 6 8.5807 -2.7515 2.7216 14 7 8.2491 -3.3724 3.8325 15 14 9.6098 -1.1942 2.7935 16 1 8.7167 -0.0172 2.9428 17 1 10.5339 -1.2647 3.9537 18 1 10.3968 -1.0626 1.5410 19 6 9.9445 -2.5406 -0.1902 20 8 9.5614 -3.6941 -0.9656 21 6 8.1815 -3.2848 -1.0490 22 6 3.5751 -1.2075 -0.0005 23 6 2.1956 -1.2002 -0.0058 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 1.6521 2.1333 0.0004 28 1 4.1115 2.1447 0.0098 29 1 8.2713 -0.5167 -0.6088 30 1 8.1339 -0.5718 1.1651 31 1 8.5385 -3.0214 4.6892 32 1 10.2596 -1.6888 -0.7930 33 1 10.6321 -2.7658 0.6250 34 1 7.4708 -4.1002 -0.9148 35 1 7.9560 -2.6603 -1.9134 36 1 4.1114 -2.1450 -0.0010 37 1 1.6519 -2.1333 -0.0100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344155803.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:33 Heat of formation + Delta-G solvation = -86.783421 kcal Electronic energy + Delta-G solvation = -21195.874066 eV Core-core repulsion = 17904.085329 eV Total energy + Delta-G solvation = -3291.788737 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.84142 -41.10940 -39.84988 -37.51490 -34.99491 -33.96388 -32.53296 -31.98672 -28.80261 -27.48817 -27.16006 -26.25149 -23.84323 -23.64077 -21.64744 -20.92428 -19.07290 -18.80545 -18.01029 -17.75770 -17.05247 -16.60104 -16.40291 -16.18997 -15.96637 -15.83602 -15.19906 -14.89935 -14.74745 -14.50245 -14.43491 -13.96725 -13.63199 -13.02284 -12.97581 -12.82680 -12.61369 -12.58958 -12.22052 -12.13239 -11.99608 -11.97491 -11.54622 -11.42247 -11.07539 -10.82757 -10.36963 -10.01585 -9.78236 -8.39657 -6.43727 -0.36009 0.36871 1.21128 1.24513 1.31255 1.41386 1.66004 2.20005 2.74773 2.76787 3.08041 3.45759 3.78976 3.86457 3.95126 3.98003 3.99581 4.16708 4.26790 4.34413 4.37704 4.38265 4.40114 4.74845 4.78548 4.79831 4.88164 4.89301 5.05518 5.17913 5.24932 5.29287 5.33644 5.33976 5.44725 5.53085 5.55336 5.90378 6.18536 6.58973 6.65418 7.19128 8.76275 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021269 B = 0.005032 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.147805 B = 5562.658508 C = 5740.601260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.047 4.047 3 C -0.132 4.132 4 C -0.062 4.062 5 C -0.158 4.158 6 C 0.496 3.504 7 O -0.546 6.546 8 O -0.335 6.335 9 C 0.073 3.927 10 C -0.023 4.023 11 C -0.486 4.486 12 H 0.044 0.956 13 C 0.027 3.973 14 N -0.935 5.935 15 Si 0.910 3.090 16 H -0.285 1.285 17 H -0.285 1.285 18 H -0.214 1.214 19 C 0.036 3.964 20 O -0.394 6.394 21 C 0.056 3.944 22 C -0.065 4.065 23 C -0.136 4.136 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.162 0.838 28 H 0.133 0.867 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.268 0.732 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.132 0.868 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.901 9.011 -9.622 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.047 4.047 3 C -0.150 4.150 4 C -0.080 4.080 5 C -0.159 4.159 6 C 0.343 3.657 7 O -0.439 6.439 8 O -0.251 6.251 9 C -0.001 4.001 10 C -0.024 4.024 11 C -0.523 4.523 12 H 0.062 0.938 13 C -0.172 4.172 14 N -0.574 5.574 15 Si 0.736 3.264 16 H -0.213 1.213 17 H -0.211 1.211 18 H -0.137 1.137 19 C -0.041 4.041 20 O -0.313 6.313 21 C -0.020 4.020 22 C -0.083 4.083 23 C -0.154 4.154 24 H 0.109 0.891 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.180 0.820 28 H 0.151 0.849 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.150 0.850 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.514 9.026 -9.568 18.858 hybrid contribution 0.927 0.632 0.877 1.424 sum -12.587 9.658 -8.690 18.089 Atomic orbital electron populations 1.20968 0.87922 1.04465 1.03983 1.20677 0.98395 0.92415 0.93213 1.21327 0.92330 0.99653 1.01641 1.21388 0.95325 0.96376 0.94940 1.19237 0.87657 0.96715 1.12273 1.21951 0.90236 0.81588 0.71905 1.90733 1.71157 1.33669 1.48300 1.86599 1.22895 1.33303 1.82254 1.23678 0.76135 0.99993 1.00255 1.21655 0.93214 0.91007 0.96499 1.20525 1.36027 1.06671 0.89098 0.93771 1.25653 0.96661 0.99739 0.95129 1.69995 1.46828 1.42078 0.98459 0.86494 0.79857 0.79660 0.80393 1.21286 1.21101 1.13650 1.24501 0.97051 0.88565 0.93942 1.89531 1.24206 1.42046 1.75527 1.23926 0.84143 0.97934 0.95987 1.21631 0.95608 0.97066 0.94015 1.21379 0.92742 0.99714 1.01553 0.89094 0.90141 0.89758 0.81998 0.84866 0.90338 0.94074 0.92286 0.88782 0.90054 0.89945 0.88855 0.85024 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.00 71.24 0.71 -0.43 16 2 C -0.05 -0.83 5.89 -19.80 -0.12 -0.94 16 3 C -0.13 -2.51 9.68 22.23 0.22 -2.30 16 4 C -0.06 -1.64 9.60 22.54 0.22 -1.43 16 5 C -0.16 -5.11 5.87 -20.10 -0.12 -5.23 16 6 C 0.50 19.78 7.88 70.33 0.55 20.34 16 7 O -0.55 -23.49 16.07 19.92 0.32 -23.17 16 8 O -0.34 -14.38 9.28 -56.20 -0.52 -14.91 16 9 C 0.07 3.17 4.43 71.98 0.32 3.49 16 10 C -0.02 -1.02 0.45 -52.23 -0.02 -1.05 16 11 C -0.49 -27.09 8.89 25.60 0.23 -26.86 16 12 H 0.04 2.75 8.04 -2.91 -0.02 2.73 16 13 C 0.03 1.55 5.45 84.65 0.46 2.01 16 14 N -0.93 -57.58 13.96 21.45 0.30 -57.28 16 15 Si 0.91 43.06 23.67 68.60 1.62 44.69 16 16 H -0.29 -13.89 6.84 99.48 0.68 -13.21 16 17 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 18 H -0.21 -8.69 5.04 99.48 0.50 -8.19 16 19 C 0.04 1.48 6.40 72.27 0.46 1.94 16 20 O -0.39 -17.04 12.40 -148.98 -1.85 -18.88 16 21 C 0.06 2.25 8.19 72.27 0.59 2.84 16 22 C -0.06 -1.85 9.62 22.54 0.22 -1.64 16 23 C -0.14 -2.87 9.68 22.23 0.22 -2.66 16 24 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 26 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 27 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 28 H 0.13 3.47 7.66 -2.91 -0.02 3.45 16 29 H 0.08 2.99 7.80 -2.39 -0.02 2.97 16 30 H 0.04 1.94 3.83 -2.39 -0.01 1.93 16 31 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 32 H 0.09 3.16 7.97 -2.39 -0.02 3.14 16 33 H 0.08 3.44 6.55 -2.39 -0.02 3.42 16 34 H 0.08 3.31 8.08 -2.39 -0.02 3.29 16 35 H 0.09 3.10 8.10 -2.39 -0.02 3.08 16 36 H 0.13 3.98 7.62 -2.91 -0.02 3.95 16 37 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -71.11 310.77 4.65 -66.46 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.84 Total: 15.00 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 3.93 Total: -11.90 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.30 Total: -57.28 kcal Atomic # 8 Polarization: -54.91 SS G_CDS: -2.05 Total: -56.96 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.62 Total: 44.69 kcal Total: -71.11 4.65 -66.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344155803.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.323 kcal (2) G-P(sol) polarization free energy of solvation -71.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds