Wall clock time and date at job start Mon Mar 30 2020 01:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99872 * 2 1 4 4 H 1.48505 * 109.47154 * 240.00001 * 3 2 1 5 5 H 1.48496 * 109.47092 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47032 * 120.00390 * 3 2 1 7 7 C 1.37873 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00314 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99766 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.46834 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99679 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46963 * 180.02562 * 11 10 9 13 13 O 1.42899 * 109.47422 * 64.99658 * 12 11 10 14 14 C 1.42903 * 113.99688 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.46863 * 180.02562 * 14 13 12 16 16 O 1.45205 * 109.46854 * 64.99607 * 15 14 13 17 17 C 1.34229 * 116.99783 * 179.97438 * 16 15 14 18 18 O 1.20833 * 119.99867 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00134 * 179.97438 * 17 16 15 20 20 H 1.08999 * 115.55804 * 34.32149 * 19 17 16 21 21 C 1.53002 * 117.50044 * 180.02562 * 19 17 16 22 22 C 1.53000 * 60.02940 * 107.50594 * 21 19 17 23 23 H 1.08999 * 117.49959 * 252.49451 * 22 21 19 24 24 F 1.39901 * 117.49487 * 107.47899 * 22 21 19 25 25 H 0.97005 * 120.00049 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47039 * 60.00039 * 9 7 2 27 27 H 1.09002 * 109.46924 * 300.00125 * 9 7 2 28 28 H 1.08997 * 109.47105 * 60.00284 * 11 10 9 29 29 H 1.08997 * 109.47196 * 300.00087 * 11 10 9 30 30 H 1.09012 * 109.46997 * 304.99626 * 12 11 10 31 31 H 1.09004 * 109.47101 * 185.00520 * 12 11 10 32 32 H 1.08998 * 109.47772 * 60.00297 * 14 13 12 33 33 H 1.09008 * 109.47195 * 299.99702 * 14 13 12 34 34 H 1.08997 * 109.46839 * 305.00227 * 15 14 13 35 35 H 1.08997 * 109.47040 * 184.99986 * 15 14 13 36 36 H 1.09002 * 117.49918 * 0.02562 * 21 19 17 37 37 H 1.09002 * 117.49754 * 215.00777 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6480 -5.9562 0.0006 13 8 3.3874 -5.8890 1.2216 14 6 4.4297 -6.8612 1.3241 15 6 5.1499 -6.6975 2.6641 16 8 4.2321 -7.0026 3.7472 17 6 4.7114 -6.9065 4.9973 18 8 5.8597 -6.5780 5.1805 19 6 3.8172 -7.2073 6.1723 20 1 3.0797 -7.9940 6.0128 21 6 4.4223 -7.0793 7.5717 22 6 3.4180 -6.0374 7.0750 23 1 3.8022 -5.0500 6.8191 24 9 2.1350 -6.0601 7.6322 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8902 27 1 0.6247 -2.5570 0.8897 28 1 0.9446 -4.9827 -0.8897 29 1 0.9452 -4.9822 0.8902 30 1 3.3216 -5.7960 -0.8413 31 1 2.1820 -6.9375 -0.0886 32 1 5.1402 -6.7195 0.5097 33 1 4.0010 -7.8615 1.2622 34 1 5.5017 -5.6708 2.7643 35 1 5.9999 -7.3786 2.7053 36 1 5.4672 -6.7770 7.6425 37 1 4.0835 -7.7821 8.3328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344248925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:30 Heat of formation + Delta-G solvation = -203.640793 kcal Electronic energy + Delta-G solvation = -20715.698287 eV Core-core repulsion = 16988.073010 eV Total energy + Delta-G solvation = -3727.625277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.01110 -40.76523 -38.20087 -37.20792 -36.26959 -35.83192 -32.73506 -31.14126 -28.96539 -26.75922 -25.65020 -22.84864 -22.63326 -22.39522 -21.91099 -20.77595 -18.51712 -17.27177 -17.17257 -16.61007 -16.37320 -16.08624 -15.91705 -15.42927 -14.96307 -14.88297 -14.42828 -14.36936 -14.11403 -13.39425 -13.27777 -13.06419 -12.77942 -12.47708 -12.11868 -11.76637 -11.62856 -11.18135 -11.06075 -10.92922 -10.82406 -10.81817 -10.75531 -10.50750 -10.47370 -9.98907 -9.51264 -9.08441 -8.80321 -8.14456 -6.08020 -4.09559 1.72658 2.27857 3.11598 3.34484 3.36829 3.41046 3.65769 3.69335 4.01055 4.26981 4.36926 4.55456 4.60244 4.73880 4.86776 4.97771 5.12695 5.16292 5.28285 5.31223 5.38467 5.42781 5.54353 5.57744 5.60640 6.01543 6.02232 6.19760 6.23807 7.12147 7.31049 7.46193 7.50250 7.82240 8.18173 8.60715 9.03477 9.55041 11.03587 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.013971 B = 0.003519 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.616684 B = 7955.664310 C = 8970.833407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.390 6.390 11 C 0.063 3.937 12 C 0.068 3.932 13 O -0.368 6.368 14 C 0.061 3.939 15 C 0.070 3.930 16 O -0.339 6.339 17 C 0.496 3.504 18 O -0.507 6.507 19 C -0.184 4.184 20 H 0.147 0.853 21 C -0.154 4.154 22 C 0.055 3.945 23 H 0.144 0.856 24 F -0.172 7.172 25 H 0.264 0.736 26 H 0.005 0.995 27 H 0.006 0.994 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.126 0.874 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.125 -18.568 9.968 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.015 4.015 12 C -0.008 4.008 13 O -0.287 6.287 14 C -0.016 4.016 15 C -0.003 4.003 16 O -0.254 6.254 17 C 0.339 3.661 18 O -0.395 6.395 19 C -0.203 4.203 20 H 0.165 0.835 21 C -0.191 4.191 22 C 0.019 3.981 23 H 0.161 0.839 24 F -0.152 7.152 25 H 0.074 0.926 26 H 0.022 0.978 27 H 0.024 0.976 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.145 0.855 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.433 -18.166 10.129 22.443 hybrid contribution 0.012 0.568 -0.362 0.674 sum 8.445 -17.597 9.767 21.826 Atomic orbital electron populations 1.69956 1.06097 1.27238 1.50578 1.24946 0.94980 0.99405 0.95157 0.86391 0.79309 0.81899 0.78841 1.20027 1.21143 1.20003 1.21027 0.94048 0.89391 1.50816 0.91606 1.20205 0.88783 0.83622 0.95361 1.87906 1.35217 1.12672 1.95174 1.22255 0.93698 0.85609 0.99908 1.22599 0.94066 0.97405 0.86724 1.88104 1.47036 1.54869 1.38708 1.22506 0.91365 0.93171 0.94568 1.23211 0.90901 1.02938 0.83250 1.86538 1.44445 1.79591 1.14858 1.22223 0.86350 0.73658 0.83915 1.90679 1.19037 1.43563 1.86254 1.22491 1.03698 1.04849 0.89263 0.83529 1.23847 1.00676 1.01005 0.93561 1.22128 0.80848 0.96400 0.98769 0.83851 1.92864 1.39387 1.97635 1.85339 0.92614 0.97762 0.97625 0.92914 0.93573 0.92663 0.92662 0.90846 0.92452 0.89676 0.89642 0.85548 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.91 22.23 29.54 -169.99 -5.02 17.20 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -15.58 9.43 -34.44 -0.32 -15.90 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.19 5.51 5.69 36.01 0.20 5.71 16 10 O -0.39 -9.84 10.29 -40.08 -0.41 -10.25 16 11 C 0.06 1.21 6.32 37.16 0.23 1.44 16 12 C 0.07 1.04 6.32 37.16 0.23 1.28 16 13 O -0.37 -6.15 10.28 -48.79 -0.50 -6.65 16 14 C 0.06 0.71 6.33 37.16 0.24 0.94 16 15 C 0.07 0.83 5.85 37.16 0.22 1.05 16 16 O -0.34 -4.43 10.19 -42.02 -0.43 -4.85 16 17 C 0.50 5.99 7.74 36.00 0.28 6.27 16 18 O -0.51 -7.03 16.01 -18.76 -0.30 -7.33 16 19 C -0.18 -1.68 6.29 -91.74 -0.58 -2.26 16 20 H 0.15 1.12 8.14 -51.93 -0.42 0.70 16 21 C -0.15 -1.10 10.03 -26.73 -0.27 -1.36 16 22 C 0.05 0.50 7.60 -26.70 -0.20 0.30 16 23 H 0.14 1.25 8.14 -51.93 -0.42 0.83 16 24 F -0.17 -1.91 17.60 2.25 0.04 -1.87 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 27 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 34 H 0.08 1.11 8.13 -51.93 -0.42 0.69 16 35 H 0.09 0.79 8.13 -51.93 -0.42 0.36 16 36 H 0.13 0.90 7.67 -51.93 -0.40 0.50 16 37 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -35.27 335.19 -6.34 -41.61 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -5.44 Total: -5.32 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -0.06 Total: -0.98 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.74 Total: -26.62 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.64 Total: -29.08 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.27 -6.34 -41.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344248925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.030 kcal (2) G-P(sol) polarization free energy of solvation -35.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds