Wall clock time and date at job start Mon Mar 30 2020 01:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99872 * 2 1 4 4 H 1.48505 * 109.47154 * 240.00001 * 3 2 1 5 5 H 1.48496 * 109.47092 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47032 * 120.00390 * 3 2 1 7 7 C 1.37873 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00314 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99766 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.46834 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99679 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46963 * 180.02562 * 11 10 9 13 13 O 1.42899 * 109.47422 * 64.99658 * 12 11 10 14 14 C 1.42903 * 113.99688 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.46863 * 180.02562 * 14 13 12 16 16 O 1.45205 * 109.46854 * 64.99607 * 15 14 13 17 17 C 1.34229 * 116.99783 * 179.97438 * 16 15 14 18 18 O 1.20833 * 119.99867 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00134 * 179.97438 * 17 16 15 20 20 H 1.08999 * 115.55804 * 34.32149 * 19 17 16 21 21 C 1.53002 * 117.50044 * 180.02562 * 19 17 16 22 22 C 1.53000 * 60.02940 * 107.50594 * 21 19 17 23 23 H 1.08999 * 117.49959 * 252.49451 * 22 21 19 24 24 F 1.39901 * 117.49487 * 107.47899 * 22 21 19 25 25 H 0.97005 * 120.00049 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47039 * 60.00039 * 9 7 2 27 27 H 1.09002 * 109.46924 * 300.00125 * 9 7 2 28 28 H 1.08997 * 109.47105 * 60.00284 * 11 10 9 29 29 H 1.08997 * 109.47196 * 300.00087 * 11 10 9 30 30 H 1.09012 * 109.46997 * 304.99626 * 12 11 10 31 31 H 1.09004 * 109.47101 * 185.00520 * 12 11 10 32 32 H 1.08998 * 109.47772 * 60.00297 * 14 13 12 33 33 H 1.09008 * 109.47195 * 299.99702 * 14 13 12 34 34 H 1.08997 * 109.46839 * 305.00227 * 15 14 13 35 35 H 1.08997 * 109.47040 * 184.99986 * 15 14 13 36 36 H 1.09002 * 117.49918 * 0.02562 * 21 19 17 37 37 H 1.09002 * 117.49754 * 215.00777 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6480 -5.9562 0.0006 13 8 3.3874 -5.8890 1.2216 14 6 4.4297 -6.8612 1.3241 15 6 5.1499 -6.6975 2.6641 16 8 4.2321 -7.0026 3.7472 17 6 4.7114 -6.9065 4.9973 18 8 5.8597 -6.5780 5.1805 19 6 3.8172 -7.2073 6.1723 20 1 3.0797 -7.9940 6.0128 21 6 4.4223 -7.0793 7.5717 22 6 3.4180 -6.0374 7.0750 23 1 3.8022 -5.0500 6.8191 24 9 2.1350 -6.0601 7.6322 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8902 27 1 0.6247 -2.5570 0.8897 28 1 0.9446 -4.9827 -0.8897 29 1 0.9452 -4.9822 0.8902 30 1 3.3216 -5.7960 -0.8413 31 1 2.1820 -6.9375 -0.0886 32 1 5.1402 -6.7195 0.5097 33 1 4.0010 -7.8615 1.2622 34 1 5.5017 -5.6708 2.7643 35 1 5.9999 -7.3786 2.7053 36 1 5.4672 -6.7770 7.6425 37 1 4.0835 -7.7821 8.3328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344248925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:29 Heat of formation + Delta-G solvation = -226.707210 kcal Electronic energy + Delta-G solvation = -20716.698522 eV Core-core repulsion = 16988.073010 eV Total energy + Delta-G solvation = -3728.625512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.125 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.80990 -41.70437 -39.41117 -38.41567 -37.75257 -36.69766 -34.95384 -32.30817 -30.43517 -28.79193 -26.49038 -24.56227 -23.54115 -23.50953 -23.38977 -21.63534 -19.37054 -18.67825 -18.28279 -18.11947 -17.64488 -17.48866 -16.91299 -16.65996 -16.35398 -16.06061 -15.90570 -15.76208 -15.48761 -14.71547 -14.46169 -14.08800 -13.79046 -13.60997 -13.36373 -13.23606 -13.08045 -12.76383 -12.70954 -12.44385 -12.24639 -11.92558 -11.85451 -11.72610 -11.64417 -11.32781 -11.25189 -10.89568 -10.57989 -10.25862 -8.33534 -6.46440 0.82334 1.38638 1.43872 1.44735 1.52345 2.33807 2.41957 2.64643 2.92761 2.99944 3.18185 3.33382 3.50468 3.83490 3.85527 3.89706 4.06835 4.16974 4.22507 4.32377 4.48005 4.56110 4.58642 4.62839 4.69786 4.75884 4.77579 4.88258 4.95750 5.15605 5.28226 5.52638 5.94044 6.24584 6.52073 6.56557 6.80018 7.25539 8.78731 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.013971 B = 0.003519 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.616684 B = 7955.664310 C = 8970.833407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.553 4.553 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.408 6.408 11 C 0.048 3.952 12 C 0.075 3.925 13 O -0.410 6.410 14 C 0.058 3.942 15 C 0.065 3.935 16 O -0.352 6.352 17 C 0.493 3.507 18 O -0.530 6.530 19 C -0.191 4.191 20 H 0.163 0.837 21 C -0.126 4.126 22 C 0.038 3.962 23 H 0.141 0.859 24 F -0.184 7.184 25 H 0.272 0.728 26 H -0.009 1.009 27 H -0.018 1.018 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.113 0.887 36 H 0.128 0.872 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.091 -19.274 10.058 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.590 4.590 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.328 6.328 11 C -0.028 4.028 12 C -0.001 4.001 13 O -0.330 6.330 14 C -0.018 4.018 15 C -0.008 4.008 16 O -0.268 6.268 17 C 0.338 3.662 18 O -0.420 6.420 19 C -0.210 4.210 20 H 0.180 0.820 21 C -0.163 4.163 22 C 0.002 3.998 23 H 0.159 0.841 24 F -0.165 7.165 25 H 0.081 0.919 26 H 0.009 0.991 27 H 0.000 1.000 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.147 0.853 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.396 -18.906 10.214 23.453 hybrid contribution -0.311 0.692 -0.387 0.852 sum 9.085 -18.214 9.827 22.602 Atomic orbital electron populations 1.70062 1.07755 1.28796 1.50297 1.25977 0.96002 1.03406 0.93772 0.85225 0.78126 0.76618 0.79383 1.18768 1.19712 1.19254 1.21374 0.94079 0.90982 1.52606 0.92175 1.19832 0.88627 0.84729 0.93475 1.87854 1.35396 1.14346 1.95219 1.22686 0.95715 0.83983 1.00453 1.22596 0.93353 0.97480 0.86675 1.88039 1.48590 1.57020 1.39323 1.22773 0.90810 0.93238 0.94959 1.23357 0.91696 1.02424 0.83301 1.86541 1.45162 1.79591 1.15542 1.22759 0.86457 0.72834 0.84195 1.90659 1.20128 1.44713 1.86484 1.22624 1.04148 1.05195 0.89021 0.81972 1.23961 1.00102 0.99687 0.92524 1.22262 0.80911 0.96851 0.99821 0.84122 1.92835 1.40378 1.97696 1.85548 0.91941 0.99108 1.00032 0.91094 0.94278 0.91794 0.88434 0.88680 0.89939 0.91871 0.86957 0.85348 0.83485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.98 45.32 29.54 68.60 2.03 47.35 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.55 -34.18 9.43 25.60 0.24 -33.93 16 8 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 9 C 0.21 12.22 5.69 71.24 0.41 12.62 16 10 O -0.41 -21.07 10.29 -144.34 -1.49 -22.56 16 11 C 0.05 1.85 6.32 71.98 0.45 2.31 16 12 C 0.07 2.16 6.32 71.98 0.45 2.61 16 13 O -0.41 -13.34 10.28 -136.01 -1.40 -14.74 16 14 C 0.06 1.25 6.33 71.98 0.46 1.70 16 15 C 0.07 1.49 5.85 71.98 0.42 1.91 16 16 O -0.35 -9.06 10.19 -48.77 -0.50 -9.56 16 17 C 0.49 11.74 7.74 71.23 0.55 12.29 16 18 O -0.53 -14.59 16.01 21.94 0.35 -14.24 16 19 C -0.19 -3.31 6.29 -11.52 -0.07 -3.38 16 20 H 0.16 2.25 8.14 -2.39 -0.02 2.23 16 21 C -0.13 -1.58 10.03 30.60 0.31 -1.27 16 22 C 0.04 0.68 7.60 30.62 0.23 0.91 16 23 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 24 F -0.18 -4.02 17.60 44.97 0.79 -3.23 16 25 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 26 H -0.01 -0.53 8.14 -2.39 -0.02 -0.54 16 27 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 28 H 0.07 2.42 8.14 -2.39 -0.02 2.41 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 35 H 0.11 1.90 8.13 -2.39 -0.02 1.88 16 36 H 0.13 1.61 7.67 -2.39 -0.02 1.60 16 37 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -77.34 335.19 5.04 -72.30 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.06 Total: 4.79 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 3.91 Total: -3.35 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.28 Total: -56.76 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -3.03 Total: -61.09 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.79 Total: -3.23 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -77.34 5.04 -72.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344248925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.411 kcal (2) G-P(sol) polarization free energy of solvation -77.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds