Wall clock time and date at job start Mon Mar 30 2020 01:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99872 * 2 1 4 4 H 1.48505 * 109.47154 * 240.00001 * 3 2 1 5 5 H 1.48492 * 109.47444 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47032 * 120.00390 * 3 2 1 7 7 C 1.37873 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00625 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00028 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47461 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00343 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47262 * 180.02562 * 11 10 9 13 13 O 1.42894 * 109.47296 * 65.00008 * 12 11 10 14 14 C 1.42903 * 113.99562 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.46863 * 179.97438 * 14 13 12 16 16 O 1.45199 * 109.47161 * 64.99606 * 15 14 13 17 17 C 1.34229 * 117.00091 * 179.97438 * 16 15 14 18 18 O 1.20823 * 119.99915 * 0.02562 * 17 16 15 19 19 C 1.50707 * 120.00009 * 180.02562 * 17 16 15 20 20 H 1.08996 * 115.54616 * 34.33357 * 19 17 16 21 21 C 1.53069 * 117.51209 * 248.61564 * 19 17 16 22 22 C 1.52995 * 117.49782 * 180.02562 * 19 17 16 23 23 H 1.08998 * 117.49906 * 215.00771 * 22 19 17 24 24 F 1.39905 * 117.50066 * 0.02562 * 22 19 17 25 25 H 0.97003 * 119.99475 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47181 * 59.99654 * 9 7 2 27 27 H 1.09002 * 109.46809 * 300.00219 * 9 7 2 28 28 H 1.09003 * 109.47195 * 59.99882 * 11 10 9 29 29 H 1.08997 * 109.47065 * 300.00213 * 11 10 9 30 30 H 1.09006 * 109.46840 * 304.99231 * 12 11 10 31 31 H 1.09004 * 109.47101 * 185.00542 * 12 11 10 32 32 H 1.08998 * 109.47772 * 59.99958 * 14 13 12 33 33 H 1.09001 * 109.47599 * 299.99397 * 14 13 12 34 34 H 1.09002 * 109.47025 * 304.99817 * 15 14 13 35 35 H 1.08997 * 109.47040 * 184.99986 * 15 14 13 36 36 H 1.09000 * 117.49477 * 145.04009 * 21 19 17 37 37 H 1.08999 * 117.51921 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6481 -5.9561 0.0006 13 8 3.3874 -5.8890 1.2216 14 6 4.4297 -6.8612 1.3241 15 6 5.1506 -6.6967 2.6636 16 8 4.2336 -7.0011 3.7474 17 6 4.7136 -6.9043 4.9971 18 8 5.8619 -6.5757 5.1795 19 6 3.8202 -7.2055 6.1729 20 1 3.0835 -7.9929 6.0139 21 6 3.4212 -6.0356 7.0757 22 6 4.4262 -7.0765 7.5718 23 1 4.0884 -7.7794 8.3333 24 9 5.7670 -6.6875 7.6617 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8902 27 1 0.6247 -2.5570 0.8897 28 1 0.9446 -4.9827 -0.8897 29 1 0.9453 -4.9822 0.8902 30 1 3.3216 -5.7960 -0.8413 31 1 2.1821 -6.9375 -0.0886 32 1 5.1402 -6.7195 0.5097 33 1 4.0011 -7.8615 1.2622 34 1 5.5027 -5.6699 2.7630 35 1 6.0006 -7.3778 2.7047 36 1 2.4218 -6.0536 7.5106 37 1 3.8051 -5.0481 6.8197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344248927.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:33 Heat of formation + Delta-G solvation = -200.967757 kcal Electronic energy + Delta-G solvation = -20793.112053 eV Core-core repulsion = 17065.602687 eV Total energy + Delta-G solvation = -3727.509366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.83545 -40.58983 -38.14781 -37.08968 -36.27045 -35.85938 -32.73644 -31.10475 -28.94715 -26.75900 -25.63287 -22.87213 -22.55358 -22.39320 -21.90736 -20.67007 -18.40333 -17.13135 -17.05699 -16.49754 -16.33684 -16.05513 -15.96595 -15.21199 -14.96331 -14.76417 -14.41693 -14.25796 -14.10652 -13.64014 -13.16476 -12.99142 -12.76373 -12.47377 -12.09824 -11.73430 -11.61802 -11.15533 -10.90804 -10.83313 -10.78278 -10.75253 -10.65998 -10.47794 -10.44538 -9.98873 -9.49611 -9.08576 -8.80455 -8.14672 -6.08413 -4.09813 1.88552 2.34750 3.15483 3.34630 3.36809 3.41290 3.62501 3.71641 4.09959 4.28840 4.36933 4.53786 4.66345 4.78725 4.87587 5.01636 5.17505 5.21898 5.27972 5.33398 5.37679 5.43684 5.56313 5.61284 5.64062 6.01554 6.02366 6.22968 6.30142 7.11550 7.32966 7.45680 7.62616 7.82224 8.17957 8.60643 9.03424 9.54852 11.03202 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.015580 B = 0.003366 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.787520 B = 8317.264712 C = 9350.334289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.390 6.390 11 C 0.063 3.937 12 C 0.068 3.932 13 O -0.368 6.368 14 C 0.062 3.938 15 C 0.071 3.929 16 O -0.342 6.342 17 C 0.488 3.512 18 O -0.495 6.495 19 C -0.184 4.184 20 H 0.150 0.850 21 C -0.158 4.158 22 C 0.052 3.948 23 H 0.147 0.853 24 F -0.165 7.165 25 H 0.264 0.736 26 H 0.005 0.995 27 H 0.006 0.994 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.584 -19.215 10.668 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.014 4.014 12 C -0.008 4.008 13 O -0.287 6.287 14 C -0.015 4.015 15 C -0.003 4.003 16 O -0.258 6.258 17 C 0.330 3.670 18 O -0.382 6.382 19 C -0.204 4.204 20 H 0.167 0.833 21 C -0.196 4.196 22 C 0.016 3.984 23 H 0.164 0.836 24 F -0.145 7.145 25 H 0.074 0.926 26 H 0.022 0.978 27 H 0.023 0.977 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.147 0.853 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.987 -18.800 10.820 22.502 hybrid contribution 0.226 0.681 -0.429 0.836 sum 6.213 -18.119 10.391 21.791 Atomic orbital electron populations 1.69957 1.06097 1.27226 1.50636 1.24943 0.94983 0.99407 0.95151 0.86391 0.79312 0.81875 0.78871 1.20015 1.21144 1.19991 1.21032 0.94070 0.89395 1.50762 0.91597 1.20200 0.88779 0.83636 0.95336 1.87909 1.35209 1.12669 1.95164 1.22252 0.93698 0.85622 0.99862 1.22594 0.94074 0.97367 0.86788 1.88103 1.47050 1.54913 1.38635 1.22501 0.91303 0.93088 0.94627 1.23171 0.90941 1.02896 0.83252 1.86517 1.44494 1.79915 1.14872 1.22288 0.86583 0.74248 0.83908 1.90738 1.18792 1.42640 1.86075 1.22503 1.03542 1.05534 0.88771 0.83266 1.23803 1.01249 0.95289 0.99230 1.22172 0.78683 1.02069 0.95468 0.83553 1.92912 1.33148 1.91792 1.96616 0.92626 0.97765 0.97653 0.92934 0.93611 0.92679 0.92683 0.90917 0.92485 0.89801 0.89747 0.85333 0.86598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.91 22.27 29.54 -169.99 -5.02 17.25 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.51 -15.59 9.43 -34.44 -0.32 -15.92 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.19 5.51 5.69 36.01 0.20 5.71 16 10 O -0.39 -9.85 10.29 -40.08 -0.41 -10.26 16 11 C 0.06 1.21 6.32 37.16 0.23 1.45 16 12 C 0.07 1.05 6.32 37.16 0.23 1.28 16 13 O -0.37 -6.23 10.28 -48.79 -0.50 -6.73 16 14 C 0.06 0.75 6.33 37.16 0.24 0.98 16 15 C 0.07 0.89 5.84 37.16 0.22 1.11 16 16 O -0.34 -4.68 10.19 -42.02 -0.43 -5.11 16 17 C 0.49 6.48 7.74 36.01 0.28 6.76 16 18 O -0.50 -7.98 14.90 -18.75 -0.28 -8.26 16 19 C -0.18 -1.65 6.30 -91.74 -0.58 -2.23 16 20 H 0.15 0.89 8.14 -51.93 -0.42 0.47 16 21 C -0.16 -1.24 10.22 -26.72 -0.27 -1.51 16 22 C 0.05 0.42 7.82 -26.75 -0.21 0.21 16 23 H 0.15 0.57 8.14 -51.93 -0.42 0.15 16 24 F -0.16 -2.07 15.72 2.25 0.04 -2.03 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 27 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.19 8.13 -51.93 -0.42 0.76 16 35 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 36 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 333.09 15.07 5.02 5.02 Total: -1.00 -36.86 333.09 -6.39 -43.25 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: -5.46 Total: -5.93 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.61 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.74 Total: -26.58 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -1.62 Total: -30.37 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.86 -6.39 -43.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344248927.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.713 kcal (2) G-P(sol) polarization free energy of solvation -36.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds