Wall clock time and date at job start Mon Mar 30 2020 01:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99872 * 2 1 4 4 H 1.48505 * 109.47154 * 240.00001 * 3 2 1 5 5 H 1.48492 * 109.47444 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47032 * 120.00390 * 3 2 1 7 7 C 1.37873 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00625 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00028 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47461 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00343 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47262 * 180.02562 * 11 10 9 13 13 O 1.42894 * 109.47296 * 65.00008 * 12 11 10 14 14 C 1.42903 * 113.99562 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.46863 * 179.97438 * 14 13 12 16 16 O 1.45199 * 109.47161 * 64.99606 * 15 14 13 17 17 C 1.34229 * 117.00091 * 179.97438 * 16 15 14 18 18 O 1.20823 * 119.99915 * 0.02562 * 17 16 15 19 19 C 1.50707 * 120.00009 * 180.02562 * 17 16 15 20 20 H 1.08996 * 115.54616 * 34.33357 * 19 17 16 21 21 C 1.53069 * 117.51209 * 248.61564 * 19 17 16 22 22 C 1.52995 * 117.49782 * 180.02562 * 19 17 16 23 23 H 1.08998 * 117.49906 * 215.00771 * 22 19 17 24 24 F 1.39905 * 117.50066 * 0.02562 * 22 19 17 25 25 H 0.97003 * 119.99475 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47181 * 59.99654 * 9 7 2 27 27 H 1.09002 * 109.46809 * 300.00219 * 9 7 2 28 28 H 1.09003 * 109.47195 * 59.99882 * 11 10 9 29 29 H 1.08997 * 109.47065 * 300.00213 * 11 10 9 30 30 H 1.09006 * 109.46840 * 304.99231 * 12 11 10 31 31 H 1.09004 * 109.47101 * 185.00542 * 12 11 10 32 32 H 1.08998 * 109.47772 * 59.99958 * 14 13 12 33 33 H 1.09001 * 109.47599 * 299.99397 * 14 13 12 34 34 H 1.09002 * 109.47025 * 304.99817 * 15 14 13 35 35 H 1.08997 * 109.47040 * 184.99986 * 15 14 13 36 36 H 1.09000 * 117.49477 * 145.04009 * 21 19 17 37 37 H 1.08999 * 117.51921 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6481 -5.9561 0.0006 13 8 3.3874 -5.8890 1.2216 14 6 4.4297 -6.8612 1.3241 15 6 5.1506 -6.6967 2.6636 16 8 4.2336 -7.0011 3.7474 17 6 4.7136 -6.9043 4.9971 18 8 5.8619 -6.5757 5.1795 19 6 3.8202 -7.2055 6.1729 20 1 3.0835 -7.9929 6.0139 21 6 3.4212 -6.0356 7.0757 22 6 4.4262 -7.0765 7.5718 23 1 4.0884 -7.7794 8.3333 24 9 5.7670 -6.6875 7.6617 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8902 27 1 0.6247 -2.5570 0.8897 28 1 0.9446 -4.9827 -0.8897 29 1 0.9453 -4.9822 0.8902 30 1 3.3216 -5.7960 -0.8413 31 1 2.1821 -6.9375 -0.0886 32 1 5.1402 -6.7195 0.5097 33 1 4.0011 -7.8615 1.2622 34 1 5.5027 -5.6699 2.7630 35 1 6.0006 -7.3778 2.7047 36 1 2.4218 -6.0536 7.5106 37 1 3.8051 -5.0481 6.8197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344248927.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:33 Heat of formation + Delta-G solvation = -226.106967 kcal Electronic energy + Delta-G solvation = -20794.202170 eV Core-core repulsion = 17065.602687 eV Total energy + Delta-G solvation = -3728.599484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.125 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.64448 -41.60938 -39.40162 -38.35600 -37.69031 -36.77981 -34.95719 -32.31224 -30.43818 -28.79346 -26.49950 -24.56227 -23.60767 -23.39441 -23.36573 -21.58117 -19.27813 -18.68147 -18.22610 -18.05198 -17.63614 -17.25121 -17.00831 -16.65464 -16.23831 -16.08183 -15.85533 -15.61656 -15.39717 -14.66527 -14.62792 -14.03146 -13.91651 -13.62686 -13.36956 -13.24649 -13.12583 -12.76782 -12.71634 -12.44785 -12.24532 -11.92387 -11.69032 -11.62394 -11.52153 -11.32611 -11.18241 -10.89799 -10.58565 -10.25544 -8.34007 -6.46651 0.92219 1.38208 1.43214 1.47780 1.51671 2.33413 2.47738 2.63513 2.99430 3.00477 3.18582 3.43989 3.51503 3.83304 3.96666 4.02826 4.06943 4.16568 4.22437 4.31895 4.46981 4.56965 4.59999 4.65417 4.72090 4.75551 4.77599 4.88401 5.01588 5.15889 5.30755 5.52401 5.94024 6.24084 6.52139 6.61178 6.80316 7.25320 8.78220 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.015580 B = 0.003366 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.787520 B = 8317.264712 C = 9350.334289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.554 4.554 8 H 0.058 0.942 9 C 0.209 3.791 10 O -0.409 6.409 11 C 0.049 3.951 12 C 0.074 3.926 13 O -0.409 6.409 14 C 0.061 3.939 15 C 0.065 3.935 16 O -0.350 6.350 17 C 0.478 3.522 18 O -0.534 6.534 19 C -0.194 4.194 20 H 0.185 0.815 21 C -0.156 4.156 22 C 0.051 3.949 23 H 0.197 0.803 24 F -0.196 7.196 25 H 0.272 0.728 26 H -0.008 1.008 27 H -0.017 1.017 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.166 0.834 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.362 -20.138 10.941 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.591 4.591 8 H 0.077 0.923 9 C 0.134 3.866 10 O -0.330 6.330 11 C -0.028 4.028 12 C -0.002 4.002 13 O -0.329 6.329 14 C -0.015 4.015 15 C -0.008 4.008 16 O -0.266 6.266 17 C 0.323 3.677 18 O -0.424 6.424 19 C -0.213 4.213 20 H 0.203 0.797 21 C -0.193 4.193 22 C 0.016 3.984 23 H 0.213 0.787 24 F -0.177 7.177 25 H 0.081 0.919 26 H 0.009 0.991 27 H 0.001 0.999 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.184 0.816 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.753 -19.755 11.084 23.371 hybrid contribution 0.260 0.882 -0.517 1.055 sum 6.014 -18.873 10.567 22.450 Atomic orbital electron populations 1.70056 1.07683 1.28792 1.50278 1.25952 0.96007 1.03320 0.93776 0.85244 0.78154 0.76738 0.79329 1.18848 1.19586 1.19369 1.21374 0.94036 0.91075 1.52628 0.92335 1.19826 0.88598 0.84655 0.93537 1.87857 1.35468 1.14407 1.95227 1.22688 0.95664 0.83891 1.00549 1.22609 0.93359 0.97608 0.86590 1.88039 1.48535 1.57000 1.39355 1.22735 0.90781 0.93338 0.94621 1.23295 0.91844 1.01994 0.83673 1.86526 1.44946 1.79763 1.15401 1.23235 0.86801 0.73055 0.84637 1.90713 1.20663 1.44548 1.86491 1.22783 1.04003 1.07202 0.87343 0.79748 1.23941 1.03004 0.93670 0.98729 1.22848 0.76964 1.02768 0.95861 0.78669 1.92844 1.35844 1.92224 1.96744 0.91914 0.99058 0.99900 0.91039 0.94082 0.91952 0.88275 0.88865 0.89683 0.92479 0.87462 0.81621 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.98 45.45 29.54 68.60 2.03 47.47 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.55 -34.29 9.43 25.60 0.24 -34.04 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.21 12.20 5.69 71.24 0.41 12.61 16 10 O -0.41 -21.17 10.29 -144.34 -1.49 -22.65 16 11 C 0.05 1.86 6.32 71.98 0.45 2.31 16 12 C 0.07 2.14 6.32 71.98 0.45 2.60 16 13 O -0.41 -13.53 10.28 -136.02 -1.40 -14.93 16 14 C 0.06 1.38 6.33 71.98 0.46 1.83 16 15 C 0.07 1.64 5.84 71.98 0.42 2.06 16 16 O -0.35 -9.55 10.19 -48.77 -0.50 -10.05 16 17 C 0.48 12.83 7.74 71.24 0.55 13.38 16 18 O -0.53 -17.93 14.90 21.97 0.33 -17.60 16 19 C -0.19 -3.20 6.30 -11.52 -0.07 -3.28 16 20 H 0.19 1.63 8.14 -2.39 -0.02 1.61 16 21 C -0.16 -2.24 10.22 30.60 0.31 -1.93 16 22 C 0.05 0.73 7.82 30.58 0.24 0.97 16 23 H 0.20 0.78 8.14 -2.39 -0.02 0.76 16 24 F -0.20 -4.97 15.72 44.97 0.71 -4.26 16 25 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 26 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 27 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 28 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.71 8.13 -2.39 -0.02 1.69 16 35 H 0.11 2.14 8.13 -2.39 -0.02 2.12 16 36 H 0.17 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -83.15 333.09 4.95 -78.20 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: 1.06 Total: 2.81 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 3.93 Total: -2.54 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.28 Total: -56.46 kcal Atomic # 8 Polarization: -62.17 SS G_CDS: -3.05 Total: -65.23 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.71 Total: -4.26 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -83.15 4.95 -78.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344248927.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.902 kcal (2) G-P(sol) polarization free energy of solvation -83.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds