Wall clock time and date at job start Mon Mar 30 2020 01:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 120.00028 * 2 1 4 4 H 1.48498 * 109.47054 * 274.50892 * 3 2 1 5 5 H 1.48500 * 109.47273 * 34.51117 * 3 2 1 6 6 H 1.48507 * 109.47160 * 154.50918 * 3 2 1 7 7 C 1.39947 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99945 * 162.66318 * 7 2 1 9 9 C 1.41396 * 119.99675 * 342.94554 * 7 2 1 10 10 C 1.40730 * 120.24733 * 334.12092 * 9 7 2 11 11 C 1.37600 * 119.74622 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.24926 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.50225 * 359.97438 * 12 11 10 14 14 C 1.37639 * 120.24517 * 359.71597 * 13 12 11 15 15 C 1.50701 * 120.12837 * 180.30099 * 14 13 12 16 16 C 1.50709 * 109.47380 * 265.27933 * 15 14 13 17 17 O 1.20827 * 119.99274 * 359.97438 * 16 15 14 18 18 O 1.34227 * 120.00103 * 179.97438 * 16 15 14 19 19 C 1.45204 * 116.99616 * 180.02562 * 18 16 15 20 20 C 1.53004 * 109.46748 * 180.02562 * 19 18 16 21 21 H 1.08998 * 113.03501 * 45.32665 * 20 19 18 22 22 C 1.54032 * 113.86305 * 177.30989 * 20 19 18 23 23 C 1.54036 * 85.82323 * 136.72229 * 22 20 19 24 24 O 1.44179 * 113.85970 * 273.35143 * 20 19 18 25 25 H 0.96999 * 120.00141 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.12663 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.87257 * 180.02562 * 11 10 9 28 28 H 1.07996 * 119.74620 * 180.02562 * 12 11 10 29 29 H 1.07998 * 119.87676 * 180.02562 * 13 12 11 30 30 H 1.09002 * 109.47074 * 25.27586 * 15 14 13 31 31 H 1.09000 * 109.47538 * 145.28210 * 15 14 13 32 32 H 1.08995 * 109.46696 * 299.99725 * 19 18 16 33 33 H 1.08994 * 109.47273 * 60.00067 * 19 18 16 34 34 H 1.09001 * 113.81911 * 250.95148 * 22 20 19 35 35 H 1.09003 * 113.81590 * 22.37696 * 22 20 19 36 36 H 1.08999 * 113.86678 * 91.56454 * 23 22 20 37 37 H 1.08993 * 113.86583 * 223.27490 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3944 2.1014 -1.3957 5 1 1.4907 2.6233 0.7932 6 1 3.5843 1.4145 0.6026 7 6 2.0080 -1.2120 0.0005 8 1 3.0511 -1.2333 -0.2781 9 6 1.3476 -2.4094 0.3602 10 6 0.2248 -2.3726 1.2079 11 6 -0.4097 -3.5442 1.5518 12 6 0.0535 -4.7577 1.0668 13 6 1.1584 -4.8059 0.2312 14 6 1.8048 -3.6460 -0.1310 15 6 3.0017 -3.7009 -1.0451 16 6 4.2629 -3.7270 -0.2204 17 8 4.1965 -3.7030 0.9858 18 8 5.4598 -3.7769 -0.8259 19 6 6.6316 -3.8001 0.0312 20 6 7.8937 -3.8561 -0.8319 21 1 7.8707 -3.1560 -1.6670 22 6 9.2040 -3.8184 -0.0230 23 6 9.6903 -4.9295 -0.9727 24 8 8.2886 -5.1925 -1.2017 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1369 -1.4286 1.5878 27 1 -1.2717 -3.5183 2.2018 28 1 -0.4509 -5.6723 1.3415 29 1 1.5103 -5.7567 -0.1411 30 1 2.9498 -4.6007 -1.6581 31 1 3.0073 -2.8219 -1.6896 32 1 6.6510 -2.8993 0.6445 33 1 6.5928 -4.6780 0.6761 34 1 9.7552 -2.8832 -0.1210 35 1 9.0915 -4.1399 1.0124 36 1 10.2167 -4.5588 -1.8522 37 1 10.2160 -5.7409 -0.4695 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344803603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:58 Heat of formation + Delta-G solvation = -86.054472 kcal Electronic energy + Delta-G solvation = -20824.063798 eV Core-core repulsion = 17532.306671 eV Total energy + Delta-G solvation = -3291.757127 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.57729 -39.68037 -37.60593 -35.77780 -33.65761 -31.88554 -30.61168 -29.50533 -29.02168 -26.97605 -25.10339 -23.80510 -21.14394 -20.92889 -20.65392 -19.29881 -17.21043 -17.14822 -16.83401 -16.43985 -16.12788 -15.58429 -15.31909 -14.77673 -14.48847 -13.78258 -13.63874 -13.02073 -12.74037 -12.64447 -12.56990 -11.90656 -11.86409 -11.58665 -11.49991 -11.21604 -11.10174 -10.99585 -10.90367 -10.74377 -10.42387 -10.29098 -9.89257 -9.71183 -9.51206 -9.41522 -9.17590 -7.36371 -7.34160 -6.77716 -4.38453 2.68012 2.86138 2.96904 3.05552 3.10507 3.24698 3.26574 3.46975 3.91689 4.03772 4.59736 4.64584 4.76910 5.02829 5.06511 5.17128 5.37593 5.41052 5.59550 5.65279 5.76461 5.87092 5.99224 6.06377 6.12870 6.27391 6.41771 6.49120 6.74083 6.97111 7.05352 7.26087 7.38318 7.61033 7.88509 8.02013 8.09893 8.27466 8.47823 8.61475 8.87217 8.97109 10.16624 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.005030 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.752588 B = 5565.724789 C = 6902.217818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.078 3.922 3 Si 0.903 3.097 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.459 4.459 8 H 0.074 0.926 9 C 0.131 3.869 10 C -0.159 4.159 11 C -0.104 4.104 12 C -0.240 4.240 13 C -0.076 4.076 14 C -0.195 4.195 15 C -0.041 4.041 16 C 0.459 3.541 17 O -0.493 6.493 18 O -0.364 6.364 19 C 0.066 3.934 20 C 0.068 3.932 21 H 0.105 0.895 22 C -0.180 4.180 23 C 0.033 3.967 24 O -0.375 6.375 25 H 0.281 0.719 26 H 0.117 0.883 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.704 -3.121 -2.304 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.489 4.489 8 H 0.092 0.908 9 C 0.128 3.872 10 C -0.178 4.178 11 C -0.122 4.122 12 C -0.259 4.259 13 C -0.094 4.094 14 C -0.197 4.197 15 C -0.079 4.079 16 C 0.302 3.698 17 O -0.379 6.379 18 O -0.283 6.283 19 C -0.008 4.008 20 C 0.010 3.990 21 H 0.122 0.878 22 C -0.217 4.217 23 C -0.044 4.044 24 O -0.294 6.294 25 H 0.092 0.908 26 H 0.135 0.865 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.356 -3.178 -2.011 13.875 hybrid contribution 0.477 0.927 0.258 1.074 sum 13.833 -2.250 -1.752 14.124 Atomic orbital electron populations 1.69821 1.07522 1.29221 1.35068 1.25881 0.94690 1.01200 0.92187 0.86383 0.80871 0.80932 0.79096 1.19460 1.19959 1.18516 1.19483 0.97546 0.91160 1.40663 0.90809 1.17343 0.90713 0.91180 0.87916 1.21278 0.99042 0.96738 1.00769 1.20698 0.98581 0.93423 0.99531 1.20314 1.01702 0.96219 1.07683 1.20335 0.95883 0.95563 0.97661 1.19067 0.99834 0.94255 1.06499 1.19994 0.86568 1.04250 0.97052 1.24515 0.84442 0.72042 0.88803 1.90637 1.87127 1.44131 1.15965 1.86557 1.15088 1.85005 1.41631 1.23019 0.82189 1.03282 0.92306 1.23494 0.92811 0.85728 0.96990 0.87780 1.24664 0.95367 1.00572 1.01121 1.23849 0.85246 0.97636 0.97688 1.89870 1.19533 1.29015 1.90957 0.90846 0.86523 0.89445 0.89495 0.89512 0.89299 0.87415 0.89738 0.90587 0.90176 0.88363 0.89964 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.24 11.01 55.55 0.61 -19.62 16 2 C 0.08 1.96 5.15 -17.34 -0.09 1.87 16 3 Si 0.90 18.64 29.59 -169.99 -5.03 13.61 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.46 -12.04 8.14 -37.74 -0.31 -12.35 16 8 H 0.07 1.88 6.68 -52.49 -0.35 1.53 16 9 C 0.13 3.49 5.56 -106.82 -0.59 2.90 16 10 C -0.16 -4.22 8.69 -38.87 -0.34 -4.56 16 11 C -0.10 -2.52 10.02 -39.66 -0.40 -2.91 16 12 C -0.24 -5.57 10.05 -39.29 -0.39 -5.96 16 13 C -0.08 -1.77 9.66 -39.66 -0.38 -2.15 16 14 C -0.19 -4.73 4.43 -103.91 -0.46 -5.19 16 15 C -0.04 -0.85 5.29 -29.03 -0.15 -1.00 16 16 C 0.46 9.57 7.59 36.01 0.27 9.85 16 17 O -0.49 -11.80 15.78 -18.75 -0.30 -12.09 16 18 O -0.36 -6.57 10.22 -39.25 -0.40 -6.97 16 19 C 0.07 0.99 5.54 37.16 0.21 1.19 16 20 C 0.07 0.80 4.79 -26.28 -0.13 0.68 16 21 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 22 C -0.18 -1.52 7.94 -25.65 -0.20 -1.72 16 23 C 0.03 0.28 9.21 37.61 0.35 0.63 16 24 O -0.37 -4.99 12.31 -35.23 -0.43 -5.43 16 25 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 26 H 0.12 3.17 6.24 -52.49 -0.33 2.84 16 27 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 28 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 30 H 0.09 1.56 8.05 -51.93 -0.42 1.14 16 31 H 0.11 2.17 7.06 -51.93 -0.37 1.80 16 32 H 0.08 1.20 8.13 -51.93 -0.42 0.78 16 33 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 319.73 15.07 4.82 4.82 Total: -1.00 -30.73 319.73 -8.18 -38.90 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.82 Total: 5.53 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -2.62 Total: -18.75 kcal Atomic # 7 Polarization: -20.24 SS G_CDS: 0.61 Total: -19.62 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -1.13 Total: -24.49 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.73 -8.18 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344803603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.153 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds