Wall clock time and date at job start Mon Mar 30 2020 01:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 120.00028 * 2 1 4 4 H 1.48498 * 109.47054 * 274.50892 * 3 2 1 5 5 H 1.48500 * 109.47273 * 34.51117 * 3 2 1 6 6 H 1.48507 * 109.47160 * 154.50918 * 3 2 1 7 7 C 1.39947 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99945 * 162.66318 * 7 2 1 9 9 C 1.41396 * 119.99675 * 342.94554 * 7 2 1 10 10 C 1.40730 * 120.24733 * 334.12092 * 9 7 2 11 11 C 1.37600 * 119.74622 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.24926 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.50225 * 359.97438 * 12 11 10 14 14 C 1.37639 * 120.24517 * 359.71597 * 13 12 11 15 15 C 1.50701 * 120.12837 * 180.30099 * 14 13 12 16 16 C 1.50709 * 109.47380 * 265.27933 * 15 14 13 17 17 O 1.20827 * 119.99274 * 359.97438 * 16 15 14 18 18 O 1.34227 * 120.00103 * 179.97438 * 16 15 14 19 19 C 1.45204 * 116.99616 * 180.02562 * 18 16 15 20 20 C 1.53004 * 109.46748 * 180.02562 * 19 18 16 21 21 H 1.08998 * 113.03501 * 45.32665 * 20 19 18 22 22 C 1.54032 * 113.86305 * 177.30989 * 20 19 18 23 23 C 1.54036 * 85.82323 * 136.72229 * 22 20 19 24 24 O 1.44179 * 113.85970 * 273.35143 * 20 19 18 25 25 H 0.96999 * 120.00141 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.12663 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.87257 * 180.02562 * 11 10 9 28 28 H 1.07996 * 119.74620 * 180.02562 * 12 11 10 29 29 H 1.07998 * 119.87676 * 180.02562 * 13 12 11 30 30 H 1.09002 * 109.47074 * 25.27586 * 15 14 13 31 31 H 1.09000 * 109.47538 * 145.28210 * 15 14 13 32 32 H 1.08995 * 109.46696 * 299.99725 * 19 18 16 33 33 H 1.08994 * 109.47273 * 60.00067 * 19 18 16 34 34 H 1.09001 * 113.81911 * 250.95148 * 22 20 19 35 35 H 1.09003 * 113.81590 * 22.37696 * 22 20 19 36 36 H 1.08999 * 113.86678 * 91.56454 * 23 22 20 37 37 H 1.08993 * 113.86583 * 223.27490 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3944 2.1014 -1.3957 5 1 1.4907 2.6233 0.7932 6 1 3.5843 1.4145 0.6026 7 6 2.0080 -1.2120 0.0005 8 1 3.0511 -1.2333 -0.2781 9 6 1.3476 -2.4094 0.3602 10 6 0.2248 -2.3726 1.2079 11 6 -0.4097 -3.5442 1.5518 12 6 0.0535 -4.7577 1.0668 13 6 1.1584 -4.8059 0.2312 14 6 1.8048 -3.6460 -0.1310 15 6 3.0017 -3.7009 -1.0451 16 6 4.2629 -3.7270 -0.2204 17 8 4.1965 -3.7030 0.9858 18 8 5.4598 -3.7769 -0.8259 19 6 6.6316 -3.8001 0.0312 20 6 7.8937 -3.8561 -0.8319 21 1 7.8707 -3.1560 -1.6670 22 6 9.2040 -3.8184 -0.0230 23 6 9.6903 -4.9295 -0.9727 24 8 8.2886 -5.1925 -1.2017 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1369 -1.4286 1.5878 27 1 -1.2717 -3.5183 2.2018 28 1 -0.4509 -5.6723 1.3415 29 1 1.5103 -5.7567 -0.1411 30 1 2.9498 -4.6007 -1.6581 31 1 3.0073 -2.8219 -1.6896 32 1 6.6510 -2.8993 0.6445 33 1 6.5928 -4.6780 0.6761 34 1 9.7552 -2.8832 -0.1210 35 1 9.0915 -4.1399 1.0124 36 1 10.2167 -4.5588 -1.8522 37 1 10.2160 -5.7409 -0.4695 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344803603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:58 Heat of formation + Delta-G solvation = -103.205940 kcal Electronic energy + Delta-G solvation = -20824.807541 eV Core-core repulsion = 17532.306671 eV Total energy + Delta-G solvation = -3292.500871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.68104 -41.02671 -39.40748 -37.36770 -35.53492 -33.63640 -31.66720 -31.37898 -29.97491 -28.63541 -26.96094 -24.81794 -22.89804 -22.67632 -21.51711 -20.98398 -19.10279 -18.63451 -17.98480 -17.73890 -17.19207 -17.04740 -16.70076 -16.27677 -15.95710 -15.48653 -15.44083 -14.42085 -14.28293 -14.07452 -13.62349 -13.44014 -13.40635 -13.02489 -12.91259 -12.80447 -12.74057 -12.56003 -12.41431 -12.13644 -11.84258 -11.56042 -11.37704 -11.34776 -11.24687 -11.03224 -10.72038 -9.26757 -9.23998 -8.63242 -6.33718 0.90480 1.07857 1.33219 1.36371 1.47646 1.53558 1.81802 2.19430 2.62112 2.75580 3.28480 3.59089 3.79416 3.92118 4.02843 4.10663 4.24487 4.34099 4.34718 4.44052 4.55502 4.57722 4.68578 4.75948 4.76844 4.95342 4.99200 5.16380 5.17037 5.20281 5.33063 5.42513 5.50519 5.73509 6.00135 6.11779 6.18594 6.37760 6.68812 6.88968 6.94882 7.06169 8.33636 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.005030 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.752588 B = 5565.724789 C = 6902.217818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.039 3.961 3 Si 0.972 3.028 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.487 4.487 8 H 0.071 0.929 9 C 0.100 3.900 10 C -0.192 4.192 11 C -0.112 4.112 12 C -0.242 4.242 13 C -0.086 4.086 14 C -0.204 4.204 15 C -0.042 4.042 16 C 0.466 3.534 17 O -0.531 6.531 18 O -0.362 6.362 19 C 0.060 3.940 20 C 0.062 3.938 21 H 0.114 0.886 22 C -0.166 4.166 23 C 0.032 3.968 24 O -0.412 6.412 25 H 0.288 0.712 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.486 -3.360 -2.974 16.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.177 4.177 3 Si 0.793 3.207 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.517 4.517 8 H 0.089 0.911 9 C 0.097 3.903 10 C -0.211 4.211 11 C -0.130 4.130 12 C -0.261 4.261 13 C -0.104 4.104 14 C -0.205 4.205 15 C -0.079 4.079 16 C 0.311 3.689 17 O -0.420 6.420 18 O -0.279 6.279 19 C -0.014 4.014 20 C 0.004 3.996 21 H 0.132 0.868 22 C -0.203 4.203 23 C -0.044 4.044 24 O -0.332 6.332 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.126 0.874 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.151 -3.432 -2.702 15.768 hybrid contribution -0.045 0.868 0.458 0.982 sum 15.106 -2.564 -2.244 15.485 Atomic orbital electron populations 1.69873 1.08849 1.30468 1.35531 1.26672 0.95423 1.04225 0.91331 0.85349 0.79078 0.76617 0.79687 1.18042 1.19086 1.18939 1.19647 0.97552 0.92197 1.42277 0.91134 1.17722 0.91336 0.92573 0.88627 1.21296 1.00480 0.96963 1.02400 1.20988 0.99066 0.93270 0.99680 1.20725 1.01615 0.96901 1.06891 1.20763 0.95679 0.96568 0.97348 1.19470 1.00814 0.93885 1.06344 1.20011 0.85400 1.05884 0.96584 1.24422 0.85348 0.71051 0.88108 1.90620 1.87784 1.46106 1.17464 1.86532 1.15153 1.84265 1.41970 1.23349 0.82095 1.03092 0.92877 1.23616 0.92488 0.85715 0.97790 0.86816 1.24595 0.93069 1.01895 1.00764 1.24157 0.83367 0.98223 0.98651 1.89835 1.22401 1.29749 1.91231 0.90147 0.88333 0.87355 0.86438 0.86431 0.86001 0.87333 0.89417 0.91423 0.87679 0.88174 0.87913 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.05 11.01 21.83 0.24 -42.81 16 2 C 0.04 1.97 5.15 85.26 0.44 2.40 16 3 Si 0.97 38.50 29.59 68.60 2.03 40.53 16 4 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.49 -26.24 8.14 23.46 0.19 -26.05 16 8 H 0.07 3.70 6.68 -2.91 -0.02 3.68 16 9 C 0.10 5.45 5.56 -21.29 -0.12 5.33 16 10 C -0.19 -10.51 8.69 22.73 0.20 -10.31 16 11 C -0.11 -5.43 10.02 22.22 0.22 -5.21 16 12 C -0.24 -10.92 10.05 22.46 0.23 -10.70 16 13 C -0.09 -3.86 9.66 22.22 0.21 -3.64 16 14 C -0.20 -9.88 4.43 -19.40 -0.09 -9.97 16 15 C -0.04 -1.69 5.29 29.10 0.15 -1.54 16 16 C 0.47 19.37 7.59 71.24 0.54 19.91 16 17 O -0.53 -25.73 15.78 21.96 0.35 -25.38 16 18 O -0.36 -12.85 10.22 -51.39 -0.53 -13.38 16 19 C 0.06 1.74 5.54 71.98 0.40 2.14 16 20 C 0.06 1.37 4.79 30.89 0.15 1.51 16 21 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 22 C -0.17 -2.38 7.94 31.29 0.25 -2.13 16 23 C 0.03 0.46 9.21 72.27 0.67 1.12 16 24 O -0.41 -10.38 12.31 -148.98 -1.83 -12.21 16 25 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 26 H 0.10 5.61 6.24 -2.91 -0.02 5.60 16 27 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 28 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 29 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 30 H 0.12 4.04 8.05 -2.39 -0.02 4.02 16 31 H 0.11 4.37 7.06 -2.39 -0.02 4.35 16 32 H 0.09 2.48 8.13 -2.39 -0.02 2.46 16 33 H 0.07 2.07 8.13 -2.39 -0.02 2.05 16 34 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.10 1.41 8.10 -2.39 -0.02 1.39 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -67.79 319.73 4.77 -63.02 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 1.07 Total: 27.33 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 3.44 Total: -37.11 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.24 Total: -42.81 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -2.01 Total: -50.97 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -67.79 4.77 -63.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344803603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.189 kcal (2) G-P(sol) polarization free energy of solvation -67.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds