Wall clock time and date at job start Mon Mar 30 2020 01:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37962 * 120.07971 * 2 1 4 4 C 1.38350 * 120.14989 * 179.76925 * 3 2 1 5 5 C 1.38383 * 120.30173 * 0.51122 * 4 3 2 6 6 C 1.37920 * 120.15456 * 359.74739 * 5 4 3 7 7 C 1.39609 * 120.07261 * 180.28085 * 2 1 3 8 8 C 1.47729 * 120.15497 * 359.95334 * 7 2 1 9 9 O 1.21476 * 119.99512 * 2.08822 * 8 7 2 10 10 O 1.34706 * 120.00533 * 182.08965 * 8 7 2 11 11 C 1.45196 * 116.99975 * 185.12392 * 10 8 7 12 12 C 1.53009 * 109.46972 * 175.09334 * 11 10 8 13 13 C 1.50705 * 112.99721 * 294.33412 * 12 11 10 14 14 H 1.07993 * 120.00044 * 121.75473 * 13 12 11 15 15 C 1.37879 * 120.00071 * 301.75896 * 13 12 11 16 16 N 1.31512 * 119.99947 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00087 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46953 * 59.99921 * 17 15 13 19 19 H 1.48502 * 109.47013 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47403 * 299.99867 * 17 15 13 21 21 C 1.54030 * 113.81656 * 162.35048 * 12 11 10 22 22 O 1.44174 * 85.51674 * 223.19206 * 21 12 11 23 23 C 1.44185 * 93.33888 * 24.19430 * 22 21 12 24 24 H 1.08999 * 109.46910 * 255.44856 * 1 2 3 25 25 H 1.08997 * 109.47090 * 135.44892 * 1 2 3 26 26 H 1.09001 * 109.46503 * 15.44593 * 1 2 3 27 27 H 1.08003 * 119.92336 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.84599 * 180.27784 * 4 3 2 29 29 H 1.08000 * 119.92318 * 179.76678 * 5 4 3 30 30 H 1.08000 * 120.07821 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.47462 * 295.08951 * 11 10 8 32 32 H 1.08998 * 109.46933 * 55.09609 * 11 10 8 33 33 H 0.96999 * 120.00105 * 185.00910 * 16 15 13 34 34 H 1.09001 * 113.86393 * 337.33828 * 21 12 11 35 35 H 1.08998 * 113.86403 * 109.04807 * 21 12 11 36 36 H 1.09004 * 113.86148 * 221.66206 * 23 22 21 37 37 H 1.08994 * 113.98787 * 89.96778 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1938 0.0000 4 6 3.5820 1.1955 0.0048 5 6 4.2817 0.0016 -0.0010 6 6 3.6031 -1.1991 -0.0064 7 6 2.2066 -1.2081 -0.0059 8 6 1.4730 -2.4904 -0.0112 9 8 0.2589 -2.4953 -0.0487 10 8 2.1505 -3.6542 0.0257 11 6 1.3725 -4.8739 -0.0974 12 6 2.3161 -6.0769 -0.1571 13 6 3.1742 -6.0912 -1.3959 14 1 4.2505 -6.0960 -1.3073 15 6 2.5851 -6.0982 -2.6425 16 7 1.2745 -6.0929 -2.7505 17 14 3.6487 -6.1153 -4.1780 18 1 4.5003 -7.3319 -4.1768 19 1 2.7795 -6.1213 -5.3821 20 1 4.5117 -4.9070 -4.1959 21 6 1.6285 -7.4223 0.1421 22 8 2.7926 -7.7103 0.9425 23 6 3.1013 -6.3167 1.1462 24 1 -0.3633 -0.2582 0.9947 25 1 -0.3633 -0.7323 -0.7209 26 1 -0.3632 0.9906 -0.2737 27 1 1.6585 2.1292 0.0004 28 1 4.1183 2.1330 0.0093 29 1 5.3617 0.0101 -0.0010 30 1 4.1505 -2.1301 -0.0113 31 1 0.7124 -4.9724 0.7644 32 1 0.7764 -4.8342 -1.0091 33 1 0.8594 -6.1711 -3.6237 34 1 0.7086 -7.3286 0.7194 35 1 1.5227 -8.0671 -0.7303 36 1 4.1636 -6.0847 1.0701 37 1 2.6323 -5.8835 2.0296 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345372495.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:37 Heat of formation + Delta-G solvation = -88.937252 kcal Electronic energy + Delta-G solvation = -21494.961704 eV Core-core repulsion = 18203.079571 eV Total energy + Delta-G solvation = -3291.882134 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.67270 -40.99485 -39.62727 -37.34452 -34.97613 -33.59882 -32.53683 -31.57884 -28.20826 -27.36263 -27.16645 -26.15272 -24.61371 -22.72734 -21.57568 -20.90769 -18.78782 -18.44248 -17.69167 -17.32052 -16.79640 -16.65677 -16.30739 -16.26759 -16.00805 -15.91951 -15.11553 -14.86261 -14.33023 -14.07235 -13.88171 -13.65079 -13.56237 -13.16194 -13.01250 -12.83310 -12.71592 -12.62227 -12.36707 -12.02374 -11.77192 -11.74029 -11.30320 -11.06142 -10.90673 -10.61823 -10.29437 -9.99127 -9.70842 -8.18849 -6.31622 -0.24638 0.39835 1.40888 1.41223 1.48724 1.59925 1.89575 2.38065 2.81587 2.95917 3.18130 3.66094 3.85500 3.91864 4.15649 4.18548 4.28253 4.39996 4.43384 4.44951 4.49654 4.59717 4.73984 4.77361 4.79618 4.81536 5.01880 5.11172 5.18850 5.24187 5.38713 5.42615 5.48636 5.49577 5.53415 5.72651 5.75219 5.97259 6.20035 6.68544 6.86454 7.35443 8.85115 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.017251 B = 0.005823 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.686458 B = 4806.977591 C = 5275.544969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.038 4.038 3 C -0.134 4.134 4 C -0.072 4.072 5 C -0.139 4.139 6 C -0.071 4.071 7 C -0.155 4.155 8 C 0.489 3.511 9 O -0.539 6.539 10 O -0.342 6.342 11 C 0.087 3.913 12 C 0.018 3.982 13 C -0.503 4.503 14 H 0.060 0.940 15 C 0.024 3.976 16 N -0.912 5.912 17 Si 0.952 3.048 18 H -0.270 1.270 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.052 3.948 22 O -0.401 6.401 23 C 0.040 3.960 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.162 0.838 28 H 0.169 0.831 29 H 0.158 0.842 30 H 0.129 0.871 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.264 0.736 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.499 15.149 5.338 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.038 4.038 3 C -0.151 4.151 4 C -0.090 4.090 5 C -0.157 4.157 6 C -0.089 4.089 7 C -0.156 4.156 8 C 0.336 3.664 9 O -0.432 6.432 10 O -0.257 6.257 11 C 0.013 3.987 12 C 0.017 3.983 13 C -0.540 4.540 14 H 0.078 0.922 15 C -0.176 4.176 16 N -0.550 5.550 17 Si 0.778 3.222 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.025 4.025 22 O -0.320 6.320 23 C -0.036 4.036 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.109 0.891 27 H 0.180 0.820 28 H 0.187 0.813 29 H 0.175 0.825 30 H 0.147 0.853 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.133 14.900 5.280 16.116 hybrid contribution -0.185 -0.664 -1.008 1.221 sum 2.947 14.236 4.273 15.153 Atomic orbital electron populations 1.20981 0.90159 1.03179 1.02823 1.20294 0.97139 0.91768 0.94646 1.21391 0.95030 0.97051 1.01642 1.21882 0.93963 0.99439 0.93697 1.21501 1.01806 0.91294 1.01078 1.21646 0.92261 1.00490 0.94536 1.19227 0.94703 0.89569 1.12131 1.21909 0.86168 0.85871 0.72415 1.90710 1.15997 1.88596 1.47867 1.86489 1.42286 1.14927 1.82047 1.23276 0.94045 0.80985 1.00351 1.21167 0.93063 0.89523 0.94547 1.20833 0.92669 1.50744 0.89748 0.92187 1.25633 0.96123 0.94168 1.01678 1.69898 1.09800 1.50068 1.25216 0.85686 0.78825 0.78976 0.78741 1.19461 1.21045 1.19575 1.23890 0.88266 0.97483 0.92858 1.89457 1.43936 1.25741 1.72882 1.24114 1.01241 0.80993 0.97271 0.91368 0.92037 0.89110 0.81998 0.81349 0.82470 0.85281 0.94068 0.90870 0.92620 0.91128 0.91027 0.89589 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 8.57 71.24 0.61 -2.57 16 2 C -0.04 -1.08 5.91 -19.60 -0.12 -1.19 16 3 C -0.13 -2.62 9.66 22.23 0.21 -2.40 16 4 C -0.07 -1.20 10.04 22.33 0.22 -0.98 16 5 C -0.14 -2.88 10.03 22.23 0.22 -2.66 16 6 C -0.07 -2.10 9.62 22.54 0.22 -1.88 16 7 C -0.16 -5.34 5.87 -20.10 -0.12 -5.46 16 8 C 0.49 21.01 7.87 70.33 0.55 21.56 16 9 O -0.54 -24.84 13.15 19.92 0.26 -24.58 16 10 O -0.34 -15.78 9.28 -56.16 -0.52 -16.30 16 11 C 0.09 4.27 4.64 71.99 0.33 4.60 16 12 C 0.02 0.86 0.58 -52.23 -0.03 0.83 16 13 C -0.50 -26.88 8.21 25.60 0.21 -26.67 16 14 H 0.06 3.19 7.80 -2.91 -0.02 3.17 16 15 C 0.02 1.28 5.34 84.66 0.45 1.74 16 16 N -0.91 -50.76 11.31 21.45 0.24 -50.52 16 17 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 C 0.05 2.45 8.26 72.27 0.60 3.05 16 22 O -0.40 -18.77 12.40 -148.98 -1.85 -20.62 16 23 C 0.04 1.72 8.28 72.27 0.60 2.32 16 24 H 0.07 1.92 8.12 -2.39 -0.02 1.90 16 25 H 0.06 2.12 6.19 -2.39 -0.01 2.10 16 26 H 0.09 1.80 7.96 -2.39 -0.02 1.78 16 27 H 0.16 2.03 8.00 -2.91 -0.02 2.01 16 28 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 29 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.13 4.04 7.61 -2.91 -0.02 4.02 16 31 H 0.04 1.89 8.07 -2.39 -0.02 1.87 16 32 H 0.07 4.07 6.10 -2.39 -0.01 4.06 16 33 H 0.26 14.23 8.32 -92.71 -0.77 13.46 16 34 H 0.07 2.99 8.05 -2.39 -0.02 2.97 16 35 H 0.07 3.61 8.09 -2.39 -0.02 3.59 16 36 H 0.09 3.51 8.08 -2.38 -0.02 3.49 16 37 H 0.08 2.98 8.10 -2.39 -0.02 2.96 16 Total: -1.00 -65.28 316.47 5.20 -60.08 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 1.07 Total: 16.61 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 3.97 Total: -9.71 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.24 Total: -50.52 kcal Atomic # 8 Polarization: -59.39 SS G_CDS: -2.11 Total: -61.50 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -65.28 5.20 -60.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345372495.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.861 kcal (2) G-P(sol) polarization free energy of solvation -65.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds