Wall clock time and date at job start Mon Mar 30 2020 01:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99888 * 2 1 4 4 H 1.48504 * 109.47183 * 264.86098 * 3 2 1 5 5 H 1.48501 * 109.47295 * 24.86343 * 3 2 1 6 6 H 1.48500 * 109.47203 * 144.86312 * 3 2 1 7 7 C 1.37871 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99928 * 0.03350 * 7 2 1 9 9 C 1.50697 * 120.00111 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.47071 * 332.49133 * 9 7 2 11 11 O 1.45198 * 109.47541 * 92.49376 * 9 7 2 12 12 C 1.34225 * 117.00465 * 209.99991 * 11 9 7 13 13 O 1.20825 * 119.99716 * 0.02562 * 12 11 9 14 14 C 1.50703 * 120.00226 * 180.02562 * 12 11 9 15 15 C 1.53897 * 113.58594 * 180.02562 * 14 12 11 16 16 C 1.53261 * 86.97548 * 220.30060 * 15 14 12 17 17 C 1.52459 * 128.58274 * 245.09595 * 16 15 14 18 18 C 1.52465 * 128.58113 * 165.15461 * 16 15 14 19 19 C 1.53546 * 87.59110 * 25.07879 * 16 15 14 20 20 C 1.50710 * 109.47180 * 212.49325 * 9 7 2 21 21 C 1.34513 * 125.78812 * 96.15714 * 20 9 7 22 22 C 1.41378 * 106.83927 * 180.02562 * 21 20 9 23 23 C 1.34512 * 106.84479 * 0.02562 * 22 21 20 24 24 O 1.34303 * 125.78800 * 275.85412 * 20 9 7 25 25 H 0.96997 * 119.99996 * 0.02562 * 1 2 3 26 26 H 1.08998 * 112.82772 * 311.11381 * 14 12 11 27 27 H 1.08991 * 113.64415 * 334.84397 * 15 14 12 28 28 H 1.08994 * 113.64255 * 105.76258 * 15 14 12 29 29 H 1.09000 * 117.51265 * 349.85836 * 17 16 15 30 30 H 1.09009 * 117.51001 * 134.95353 * 17 16 15 31 31 H 1.08994 * 117.51445 * 225.04539 * 18 16 15 32 32 H 1.08999 * 117.51056 * 10.11866 * 18 16 15 33 33 H 1.09001 * 113.65240 * 220.41616 * 19 16 15 34 34 H 1.09006 * 113.72401 * 89.42490 * 19 16 15 35 35 H 1.08001 * 126.58100 * 0.04287 * 21 20 9 36 36 H 1.08003 * 126.57962 * 179.97438 * 22 21 20 37 37 H 1.07997 * 125.79334 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6052 1.9838 -1.3945 5 1 1.3965 2.6816 0.5887 6 1 3.4882 1.4740 0.8058 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0004 9 6 3.5115 -1.1939 0.0011 10 1 3.8750 -0.2826 -0.4736 11 8 3.9951 -1.2532 1.3689 12 6 5.1746 -0.6657 1.6243 13 8 5.7827 -0.1196 0.7345 14 6 5.7404 -0.6873 3.0209 15 6 7.0967 0.0289 3.1469 16 6 7.5217 -1.1131 4.0766 17 6 7.8639 -1.0533 5.5610 18 6 8.9239 -1.4865 4.5444 19 6 6.4807 -1.9911 3.3673 20 6 4.0142 -2.3926 -0.7617 21 6 4.3872 -2.4027 -2.0541 22 6 4.7861 -3.7253 -2.3548 23 6 4.6325 -4.4444 -1.2285 24 8 4.1711 -3.6305 -0.2650 25 1 -0.4850 0.8400 -0.0004 26 1 5.0152 -0.3833 3.7758 27 1 7.6597 0.0661 2.2144 28 1 7.0353 0.9971 3.6437 29 1 7.9731 -0.0676 6.0133 30 1 7.4411 -1.8232 6.2066 31 1 9.1982 -2.5411 4.5214 32 1 9.7303 -0.7859 4.3275 33 1 5.9257 -2.6429 4.0421 34 1 6.8710 -2.5170 2.4959 35 1 4.3831 -1.5618 -2.7318 36 1 5.1446 -4.0887 -3.3066 37 1 4.8492 -5.4965 -1.1164 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345546285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:47 Heat of formation + Delta-G solvation = -24.236424 kcal Electronic energy + Delta-G solvation = -21433.917872 eV Core-core repulsion = 18144.841376 eV Total energy + Delta-G solvation = -3289.076495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.83183 -40.22336 -38.57313 -35.69215 -33.60261 -33.10134 -32.28619 -30.51572 -27.19217 -25.73871 -25.05361 -22.72851 -22.52330 -21.10006 -20.14372 -19.37982 -18.34429 -17.52271 -17.11269 -16.70472 -15.72939 -15.54540 -15.21600 -15.16697 -14.89035 -14.24898 -13.75431 -13.04812 -12.76434 -12.44602 -12.26046 -12.15885 -12.08472 -11.94678 -11.66205 -11.59871 -11.50055 -11.22324 -10.99142 -10.39544 -10.29525 -10.16277 -9.80944 -9.74629 -9.68544 -9.51787 -9.24219 -8.97923 -7.74047 -6.50668 -4.59958 2.43786 2.92233 3.07452 3.19126 3.25192 3.29388 3.52006 3.74177 3.82560 4.10480 4.28505 4.55781 4.75135 4.81517 4.83799 5.01543 5.35840 5.46478 5.51450 5.61575 5.62537 5.67690 5.73151 5.76873 5.84080 5.96995 6.00370 6.02734 6.19266 6.23318 6.39187 6.44385 6.57054 6.74956 7.07605 7.14116 7.47258 7.88743 8.06128 8.59925 8.68847 9.05918 10.58070 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.006731 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.890562 B = 4158.793153 C = 5436.296492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.092 3.908 3 Si 0.871 3.129 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.506 4.506 8 H 0.090 0.910 9 C 0.253 3.747 10 H 0.078 0.922 11 O -0.350 6.350 12 C 0.458 3.542 13 O -0.527 6.527 14 C -0.110 4.110 15 C -0.079 4.079 16 C -0.163 4.163 17 C -0.151 4.151 18 C -0.166 4.166 19 C -0.076 4.076 20 C 0.033 3.967 21 C -0.229 4.229 22 C -0.210 4.210 23 C -0.072 4.072 24 O -0.168 6.168 25 H 0.276 0.724 26 H 0.120 0.880 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.300 -3.048 6.127 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.117 4.117 3 Si 0.696 3.304 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.541 4.541 8 H 0.108 0.892 9 C 0.201 3.799 10 H 0.096 0.904 11 O -0.266 6.266 12 C 0.301 3.699 13 O -0.418 6.418 14 C -0.130 4.130 15 C -0.116 4.116 16 C -0.163 4.163 17 C -0.187 4.187 18 C -0.202 4.202 19 C -0.114 4.114 20 C -0.018 4.018 21 C -0.248 4.248 22 C -0.229 4.229 23 C -0.140 4.140 24 O -0.063 6.063 25 H 0.086 0.914 26 H 0.138 0.862 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 13.180 -2.882 6.119 14.814 hybrid contribution 0.309 0.826 -0.439 0.985 sum 13.489 -2.056 5.680 14.780 Atomic orbital electron populations 1.69856 1.06364 1.28377 1.44626 1.25110 0.94948 0.99445 0.92224 0.86902 0.80671 0.82835 0.79979 1.19033 1.20163 1.18297 1.20795 0.85953 0.95839 1.51534 0.89238 1.19546 0.94597 0.88551 0.77179 0.90443 1.87125 1.33314 1.69062 1.37149 1.23433 0.80488 0.75193 0.90742 1.90546 1.60368 1.43059 1.47840 1.22369 0.97048 1.00047 0.93505 1.22449 0.93903 0.96137 0.99127 1.22210 0.97609 0.99920 0.96545 1.22783 1.02572 1.02804 0.90585 1.22785 0.91925 1.01900 1.03634 1.22395 0.94463 0.94654 0.99852 1.23295 0.99381 0.84663 0.94497 1.21374 1.08964 0.98323 0.96170 1.21665 1.07670 0.94148 0.99419 1.23826 1.05885 0.96496 0.87770 1.84076 1.65031 1.18683 1.38541 0.91410 0.86176 0.88276 0.90883 0.88620 0.88522 0.88716 0.88747 0.90192 0.89291 0.84039 0.84207 0.79001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.64 13.96 55.43 0.77 -23.87 16 2 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 3 Si 0.87 21.04 26.88 -169.99 -4.57 16.47 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.26 -6.34 6.79 56.52 0.38 -5.96 16 7 C -0.51 -14.25 9.23 -34.44 -0.32 -14.57 16 8 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 9 C 0.25 6.45 1.91 -29.03 -0.06 6.40 16 10 H 0.08 2.02 4.68 -51.93 -0.24 1.77 16 11 O -0.35 -8.52 9.84 -41.92 -0.41 -8.93 16 12 C 0.46 9.87 7.21 36.01 0.26 10.13 16 13 O -0.53 -12.37 15.11 -18.75 -0.28 -12.66 16 14 C -0.11 -1.80 4.26 -90.85 -0.39 -2.18 16 15 C -0.08 -1.11 7.42 -26.13 -0.19 -1.30 16 16 C -0.16 -1.96 3.10 -154.64 -0.48 -2.44 16 17 C -0.15 -1.46 10.53 -26.94 -0.28 -1.75 16 18 C -0.17 -1.65 10.53 -26.94 -0.28 -1.93 16 19 C -0.08 -1.06 7.66 -25.99 -0.20 -1.26 16 20 C 0.03 0.78 6.17 -35.62 -0.22 0.56 16 21 C -0.23 -4.89 10.81 -39.70 -0.43 -5.31 16 22 C -0.21 -3.76 10.91 -39.71 -0.43 -4.20 16 23 C -0.07 -1.27 12.09 29.42 0.36 -0.92 16 24 O -0.17 -3.71 10.64 2.46 0.03 -3.68 16 25 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.12 1.79 8.14 -51.93 -0.42 1.37 16 27 H 0.10 1.51 7.43 -51.93 -0.39 1.13 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.31 8.09 -51.93 -0.42 0.88 16 35 H 0.14 2.82 8.06 -52.49 -0.42 2.40 16 36 H 0.14 2.01 8.06 -52.48 -0.42 1.59 16 37 H 0.19 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 322.47 15.07 4.86 4.86 Total: -1.00 -31.50 322.47 -7.22 -38.72 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -4.85 Total: 5.41 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -2.76 Total: -16.32 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.77 Total: -23.87 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.67 Total: -25.27 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.57 Total: 16.47 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.50 -7.22 -38.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.485 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds