Wall clock time and date at job start Mon Mar 30 2020 01:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99888 * 2 1 4 4 H 1.48504 * 109.47183 * 264.86098 * 3 2 1 5 5 H 1.48501 * 109.47295 * 24.86343 * 3 2 1 6 6 H 1.48500 * 109.47203 * 144.86312 * 3 2 1 7 7 C 1.37871 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99928 * 0.03350 * 7 2 1 9 9 C 1.50697 * 120.00111 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.47071 * 332.49133 * 9 7 2 11 11 O 1.45198 * 109.47541 * 92.49376 * 9 7 2 12 12 C 1.34225 * 117.00465 * 209.99991 * 11 9 7 13 13 O 1.20825 * 119.99716 * 0.02562 * 12 11 9 14 14 C 1.50703 * 120.00226 * 180.02562 * 12 11 9 15 15 C 1.53897 * 113.58594 * 180.02562 * 14 12 11 16 16 C 1.53261 * 86.97548 * 220.30060 * 15 14 12 17 17 C 1.52459 * 128.58274 * 245.09595 * 16 15 14 18 18 C 1.52465 * 128.58113 * 165.15461 * 16 15 14 19 19 C 1.53546 * 87.59110 * 25.07879 * 16 15 14 20 20 C 1.50710 * 109.47180 * 212.49325 * 9 7 2 21 21 C 1.34513 * 125.78812 * 96.15714 * 20 9 7 22 22 C 1.41378 * 106.83927 * 180.02562 * 21 20 9 23 23 C 1.34512 * 106.84479 * 0.02562 * 22 21 20 24 24 O 1.34303 * 125.78800 * 275.85412 * 20 9 7 25 25 H 0.96997 * 119.99996 * 0.02562 * 1 2 3 26 26 H 1.08998 * 112.82772 * 311.11381 * 14 12 11 27 27 H 1.08991 * 113.64415 * 334.84397 * 15 14 12 28 28 H 1.08994 * 113.64255 * 105.76258 * 15 14 12 29 29 H 1.09000 * 117.51265 * 349.85836 * 17 16 15 30 30 H 1.09009 * 117.51001 * 134.95353 * 17 16 15 31 31 H 1.08994 * 117.51445 * 225.04539 * 18 16 15 32 32 H 1.08999 * 117.51056 * 10.11866 * 18 16 15 33 33 H 1.09001 * 113.65240 * 220.41616 * 19 16 15 34 34 H 1.09006 * 113.72401 * 89.42490 * 19 16 15 35 35 H 1.08001 * 126.58100 * 0.04287 * 21 20 9 36 36 H 1.08003 * 126.57962 * 179.97438 * 22 21 20 37 37 H 1.07997 * 125.79334 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6052 1.9838 -1.3945 5 1 1.3965 2.6816 0.5887 6 1 3.4882 1.4740 0.8058 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0004 9 6 3.5115 -1.1939 0.0011 10 1 3.8750 -0.2826 -0.4736 11 8 3.9951 -1.2532 1.3689 12 6 5.1746 -0.6657 1.6243 13 8 5.7827 -0.1196 0.7345 14 6 5.7404 -0.6873 3.0209 15 6 7.0967 0.0289 3.1469 16 6 7.5217 -1.1131 4.0766 17 6 7.8639 -1.0533 5.5610 18 6 8.9239 -1.4865 4.5444 19 6 6.4807 -1.9911 3.3673 20 6 4.0142 -2.3926 -0.7617 21 6 4.3872 -2.4027 -2.0541 22 6 4.7861 -3.7253 -2.3548 23 6 4.6325 -4.4444 -1.2285 24 8 4.1711 -3.6305 -0.2650 25 1 -0.4850 0.8400 -0.0004 26 1 5.0152 -0.3833 3.7758 27 1 7.6597 0.0661 2.2144 28 1 7.0353 0.9971 3.6437 29 1 7.9731 -0.0676 6.0133 30 1 7.4411 -1.8232 6.2066 31 1 9.1982 -2.5411 4.5214 32 1 9.7303 -0.7859 4.3275 33 1 5.9257 -2.6429 4.0421 34 1 6.8710 -2.5170 2.4959 35 1 4.3831 -1.5618 -2.7318 36 1 5.1446 -4.0887 -3.3066 37 1 4.8492 -5.4965 -1.1164 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345546285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:46 Heat of formation + Delta-G solvation = -41.841094 kcal Electronic energy + Delta-G solvation = -21434.681267 eV Core-core repulsion = 18144.841376 eV Total energy + Delta-G solvation = -3289.839891 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.44040 -41.69584 -39.92494 -37.49631 -35.21587 -34.60619 -33.92113 -32.31153 -28.97997 -26.85676 -26.55752 -24.51853 -23.30037 -22.66706 -21.72629 -21.02440 -19.55437 -19.38807 -18.76089 -18.38921 -17.45851 -16.99964 -16.75234 -16.39488 -16.08617 -15.94536 -15.33951 -14.91626 -14.19432 -14.00791 -13.70660 -13.62806 -13.50700 -13.45156 -13.22944 -13.06641 -12.91522 -12.59690 -12.29647 -12.07510 -11.86852 -11.64706 -11.51081 -11.32309 -11.17205 -10.98987 -10.80636 -10.58257 -9.35857 -8.63924 -6.79486 0.83419 1.16549 1.20300 1.22985 1.34020 1.69943 1.92796 2.08216 2.22388 2.79591 2.95136 3.31388 3.47682 3.61086 3.78927 3.83229 4.02180 4.07500 4.17166 4.22952 4.33859 4.43320 4.67315 4.74408 4.76921 4.82686 4.89937 4.98080 4.98612 4.99961 5.03511 5.18509 5.19293 5.26664 5.31832 5.61740 5.69853 5.97578 6.28249 6.33600 6.89068 6.91794 8.49904 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.006731 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.890562 B = 4158.793153 C = 5436.296492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.051 3.949 3 Si 0.929 3.071 4 H -0.254 1.254 5 H -0.257 1.257 6 H -0.269 1.269 7 C -0.524 4.524 8 H 0.048 0.952 9 C 0.261 3.739 10 H 0.068 0.932 11 O -0.365 6.365 12 C 0.451 3.549 13 O -0.551 6.551 14 C -0.117 4.117 15 C -0.076 4.076 16 C -0.173 4.173 17 C -0.134 4.134 18 C -0.157 4.157 19 C -0.073 4.073 20 C -0.017 4.017 21 C -0.232 4.232 22 C -0.214 4.214 23 C -0.057 4.057 24 O -0.190 6.190 25 H 0.283 0.717 26 H 0.135 0.865 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.147 0.853 36 H 0.181 0.819 37 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.723 -3.451 7.041 17.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.155 4.155 3 Si 0.751 3.249 4 H -0.179 1.179 5 H -0.181 1.181 6 H -0.193 1.193 7 C -0.559 4.559 8 H 0.067 0.933 9 C 0.208 3.792 10 H 0.085 0.915 11 O -0.282 6.282 12 C 0.296 3.704 13 O -0.443 6.443 14 C -0.136 4.136 15 C -0.113 4.113 16 C -0.173 4.173 17 C -0.171 4.171 18 C -0.194 4.194 19 C -0.111 4.111 20 C -0.068 4.068 21 C -0.251 4.251 22 C -0.232 4.232 23 C -0.124 4.124 24 O -0.087 6.087 25 H 0.093 0.907 26 H 0.153 0.847 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.165 0.835 36 H 0.198 0.802 37 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 15.603 -3.285 7.036 17.428 hybrid contribution -0.354 0.788 -0.748 1.143 sum 15.248 -2.497 6.289 16.682 Atomic orbital electron populations 1.69934 1.07645 1.29681 1.46144 1.25789 0.95631 1.02400 0.91635 0.86013 0.79122 0.79326 0.80438 1.17869 1.18070 1.19340 1.20788 0.87739 0.94559 1.52862 0.93329 1.19139 0.92939 0.89573 0.77503 0.91483 1.87010 1.35149 1.69832 1.36199 1.24480 0.79245 0.73886 0.92791 1.90514 1.60617 1.43948 1.49219 1.22668 0.98147 1.02792 0.89990 1.22397 0.92053 0.97643 0.99211 1.22016 0.99213 0.97844 0.98275 1.22952 1.01097 1.03958 0.89083 1.22927 0.91053 1.02809 1.02628 1.22362 0.94940 0.93901 0.99880 1.23039 1.03115 0.85212 0.95428 1.21762 1.07664 1.00377 0.95325 1.22094 1.07474 0.92319 1.01355 1.24956 1.02802 0.97985 0.86609 1.84032 1.65806 1.18592 1.40259 0.90683 0.84736 0.90089 0.89353 0.87283 0.87254 0.87779 0.87823 0.88899 0.90731 0.83546 0.80150 0.73791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.42 13.96 21.44 0.30 -53.12 16 2 C 0.05 2.93 5.47 84.65 0.46 3.39 16 3 Si 0.93 44.44 26.88 68.60 1.84 46.29 16 4 H -0.25 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.27 -13.16 6.79 99.48 0.68 -12.49 16 7 C -0.52 -31.15 9.23 25.60 0.24 -30.91 16 8 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 9 C 0.26 13.87 1.91 29.10 0.06 13.93 16 10 H 0.07 3.63 4.68 -2.39 -0.01 3.62 16 11 O -0.37 -18.44 9.84 -48.82 -0.48 -18.92 16 12 C 0.45 19.83 7.21 71.24 0.51 20.34 16 13 O -0.55 -26.48 15.11 21.97 0.33 -26.15 16 14 C -0.12 -3.75 4.26 -10.94 -0.05 -3.80 16 15 C -0.08 -2.04 7.42 30.98 0.23 -1.81 16 16 C -0.17 -3.77 3.10 -52.27 -0.16 -3.93 16 17 C -0.13 -2.10 10.53 30.46 0.32 -1.78 16 18 C -0.16 -2.62 10.53 30.46 0.32 -2.30 16 19 C -0.07 -1.96 7.66 31.07 0.24 -1.72 16 20 C -0.02 -0.85 6.17 24.84 0.15 -0.69 16 21 C -0.23 -9.91 10.81 22.19 0.24 -9.67 16 22 C -0.21 -7.18 10.91 22.19 0.24 -6.94 16 23 C -0.06 -1.88 12.09 66.97 0.81 -1.07 16 24 O -0.19 -8.47 10.64 0.53 0.01 -8.47 16 25 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 26 H 0.13 3.89 8.14 -2.39 -0.02 3.87 16 27 H 0.08 2.46 7.43 -2.39 -0.02 2.44 16 28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.07 2.18 8.09 -2.38 -0.02 2.16 16 35 H 0.15 5.90 8.06 -2.91 -0.02 5.88 16 36 H 0.18 4.47 8.06 -2.91 -0.02 4.44 16 37 H 0.25 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -72.62 322.47 6.66 -65.96 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 1.04 Total: 21.37 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 3.61 Total: -26.97 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.30 Total: -53.12 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -0.14 Total: -53.53 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.84 Total: 46.29 kcal Total: -72.62 6.66 -65.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.119 kcal (2) G-P(sol) polarization free energy of solvation -72.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds