Wall clock time and date at job start Mon Mar 30 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00048 * 2 1 4 4 H 1.48498 * 109.47240 * 270.00649 * 3 2 1 5 5 H 1.48505 * 109.47233 * 30.00619 * 3 2 1 6 6 H 1.48499 * 109.47119 * 150.00243 * 3 2 1 7 7 C 1.37875 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00535 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99775 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.47135 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.46761 * 59.99476 * 9 7 2 12 12 C 1.34230 * 116.99836 * 90.00637 * 11 9 7 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 9 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 9 15 15 C 1.53889 * 113.58513 * 278.93897 * 14 12 11 16 16 C 1.53431 * 86.82233 * 220.45040 * 15 14 12 17 17 C 1.52460 * 128.60427 * 165.10005 * 16 15 14 18 18 C 1.52454 * 128.51813 * 245.01136 * 16 15 14 19 19 C 1.53253 * 87.71692 * 25.01614 * 16 15 14 20 20 C 1.50695 * 109.46800 * 299.99701 * 9 7 2 21 21 C 1.34517 * 125.78965 * 264.71278 * 20 9 7 22 22 C 1.41380 * 106.84089 * 179.89500 * 21 20 9 23 23 C 1.34513 * 106.83919 * 0.37266 * 22 21 20 24 24 O 1.34300 * 108.42576 * 359.77082 * 23 22 21 25 25 H 0.96994 * 119.99587 * 359.97438 * 1 2 3 26 26 H 1.09009 * 112.83020 * 50.04989 * 14 12 11 27 27 H 1.08997 * 113.64802 * 334.91933 * 15 14 12 28 28 H 1.09001 * 113.64415 * 105.92942 * 15 14 12 29 29 H 1.09001 * 117.51239 * 224.96257 * 17 16 15 30 30 H 1.09006 * 117.51192 * 10.06012 * 17 16 15 31 31 H 1.09000 * 117.51746 * 349.80881 * 18 16 15 32 32 H 1.09000 * 117.51410 * 134.87101 * 18 16 15 33 33 H 1.09001 * 113.64287 * 220.48008 * 19 16 15 34 34 H 1.09006 * 113.72662 * 89.49914 * 19 16 15 35 35 H 1.07994 * 126.57709 * 0.02671 * 21 20 9 36 36 H 1.08000 * 126.57782 * 180.16570 * 22 21 20 37 37 H 1.08008 * 125.78728 * 179.75388 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 1 3.8749 -2.2218 -0.0010 11 8 3.9960 -0.5098 1.1844 12 6 4.1996 -1.2585 2.2797 13 8 3.9799 -2.4462 2.2490 14 6 4.6958 -0.6166 3.5497 15 6 6.2172 -0.3859 3.5693 16 6 6.1799 -0.8321 5.0368 17 6 7.3404 -1.2447 5.9354 18 6 6.4958 -0.0164 6.2855 19 6 4.9047 -1.6137 4.7029 20 6 4.0134 -0.4835 -1.2316 21 6 4.3699 -1.0702 -2.3884 22 6 4.7730 -0.0365 -3.2647 23 6 4.6466 1.1192 -2.5882 24 8 4.1861 0.8425 -1.3574 25 1 -0.4849 0.8400 0.0004 26 1 4.1175 0.2630 3.8329 27 1 6.7707 -1.0642 2.9200 28 1 6.5028 0.6576 3.4359 29 1 7.2102 -2.1366 6.5482 30 1 8.3506 -1.0719 5.5643 31 1 6.9505 0.9641 6.1448 32 1 5.8098 -0.1000 7.1284 33 1 4.1397 -1.5534 5.4770 34 1 5.0907 -2.6348 4.3698 35 1 4.3498 -2.1276 -2.6067 36 1 5.1195 -0.1529 -4.2810 37 1 4.8767 2.1030 -2.9701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345546286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:48 Heat of formation + Delta-G solvation = -7.873839 kcal Electronic energy + Delta-G solvation = -21620.158543 eV Core-core repulsion = 18331.791583 eV Total energy + Delta-G solvation = -3288.366960 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.95029 -40.18187 -38.53902 -35.69348 -33.56425 -32.94707 -32.34876 -30.49821 -26.96104 -25.72293 -25.00088 -22.72487 -22.50792 -21.24470 -19.98415 -19.67819 -18.32390 -17.68067 -17.07393 -16.43843 -15.88260 -15.54382 -15.36885 -15.19417 -14.62490 -13.99342 -13.88179 -13.06323 -12.76821 -12.43806 -12.40003 -12.19788 -11.99748 -11.78583 -11.66887 -11.57930 -11.39969 -11.06240 -10.68225 -10.36267 -10.26069 -10.20795 -9.72843 -9.61078 -9.33496 -9.22039 -9.03789 -8.68357 -7.69389 -6.34370 -4.48123 2.41268 3.02520 3.15329 3.23553 3.41949 3.47908 3.64482 3.87789 4.12481 4.30416 4.38938 4.58647 4.78165 4.83033 4.88462 5.03621 5.38445 5.51308 5.52949 5.62645 5.63763 5.66781 5.74615 5.78293 5.85645 6.02127 6.03968 6.12553 6.24743 6.26945 6.41918 6.45834 6.58894 6.83065 7.11711 7.23157 7.51692 7.85417 8.15787 8.62347 8.76967 9.25296 10.72742 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.020288 B = 0.005918 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.762061 B = 4730.215818 C = 5160.176577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.087 3.913 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.298 1.298 6 H -0.218 1.218 7 C -0.536 4.536 8 H 0.090 0.910 9 C 0.249 3.751 10 H 0.090 0.910 11 O -0.355 6.355 12 C 0.469 3.531 13 O -0.517 6.517 14 C -0.108 4.108 15 C -0.079 4.079 16 C -0.163 4.163 17 C -0.166 4.166 18 C -0.152 4.152 19 C -0.077 4.077 20 C 0.035 3.965 21 C -0.230 4.230 22 C -0.205 4.205 23 C -0.076 4.076 24 O -0.164 6.164 25 H 0.271 0.729 26 H 0.119 0.881 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.353 2.322 5.880 14.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.121 4.121 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.227 1.227 6 H -0.144 1.144 7 C -0.571 4.571 8 H 0.108 0.892 9 C 0.196 3.804 10 H 0.107 0.893 11 O -0.272 6.272 12 C 0.312 3.688 13 O -0.407 6.407 14 C -0.127 4.127 15 C -0.117 4.117 16 C -0.163 4.163 17 C -0.202 4.202 18 C -0.188 4.188 19 C -0.114 4.114 20 C -0.015 4.015 21 C -0.249 4.249 22 C -0.224 4.224 23 C -0.143 4.143 24 O -0.062 6.062 25 H 0.080 0.920 26 H 0.137 0.863 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 13.036 2.255 6.032 14.539 hybrid contribution 0.045 0.805 -0.527 0.963 sum 13.081 3.060 5.504 14.518 Atomic orbital electron populations 1.69932 1.06811 1.28163 1.45317 1.25196 0.94935 1.00406 0.91580 0.86576 0.80905 0.81542 0.79105 1.20142 1.22745 1.14363 1.21101 0.86907 0.95769 1.53329 0.89206 1.19264 0.94758 0.90928 0.75423 0.89250 1.86962 1.75755 1.43264 1.21219 1.23062 0.74004 0.85821 0.85894 1.90555 1.48318 1.17048 1.84774 1.22340 0.97793 1.00945 0.91605 1.22410 0.93663 1.02073 0.93526 1.22201 0.98108 1.03622 0.92346 1.22785 0.95610 0.98838 1.03007 1.22779 1.02878 0.95887 0.97302 1.22439 0.94603 0.98541 0.95847 1.23092 0.98912 0.80466 0.99063 1.21226 1.09686 1.00247 0.93745 1.21621 1.07611 0.92459 1.00732 1.23789 1.05336 0.99964 0.85200 1.84491 1.64314 1.25250 1.32117 0.91974 0.86289 0.89263 0.90400 0.88700 0.88779 0.88627 0.88576 0.90734 0.88166 0.83955 0.84225 0.79511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.96 55.43 0.77 -25.52 16 2 C 0.09 2.53 5.45 -17.82 -0.10 2.43 16 3 Si 0.89 22.46 22.92 -169.99 -3.90 18.57 16 4 H -0.27 -6.83 6.02 56.52 0.34 -6.49 16 5 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.22 -5.33 4.91 56.52 0.28 -5.05 16 7 C -0.54 -15.37 9.51 -34.44 -0.33 -15.70 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 C 0.25 6.18 2.55 -29.03 -0.07 6.10 16 10 H 0.09 2.16 7.15 -51.93 -0.37 1.79 16 11 O -0.36 -8.39 6.69 -42.05 -0.28 -8.67 16 12 C 0.47 9.99 7.45 36.00 0.27 10.25 16 13 O -0.52 -12.12 15.12 -18.76 -0.28 -12.40 16 14 C -0.11 -1.74 4.25 -90.85 -0.39 -2.13 16 15 C -0.08 -1.07 7.66 -26.05 -0.20 -1.27 16 16 C -0.16 -1.94 3.09 -154.71 -0.48 -2.42 16 17 C -0.17 -1.63 10.53 -26.95 -0.28 -1.91 16 18 C -0.15 -1.48 10.53 -26.95 -0.28 -1.76 16 19 C -0.08 -1.08 7.42 -26.14 -0.19 -1.27 16 20 C 0.04 0.82 5.33 -35.63 -0.19 0.63 16 21 C -0.23 -4.71 10.81 -39.70 -0.43 -5.13 16 22 C -0.20 -3.68 10.91 -39.70 -0.43 -4.11 16 23 C -0.08 -1.42 11.72 29.42 0.34 -1.08 16 24 O -0.16 -3.73 4.88 2.02 0.01 -3.72 16 25 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.12 1.83 8.14 -51.92 -0.42 1.41 16 27 H 0.09 1.21 8.09 -51.93 -0.42 0.79 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.10 1.51 7.44 -51.93 -0.39 1.12 16 35 H 0.14 2.61 8.06 -52.49 -0.42 2.19 16 36 H 0.14 2.00 8.06 -52.49 -0.42 1.57 16 37 H 0.19 2.66 8.06 -52.48 -0.42 2.24 16 LS Contribution 309.03 15.07 4.66 4.66 Total: -1.00 -32.62 309.03 -6.93 -39.55 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.15 Total: 4.91 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -2.76 Total: -17.38 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.77 Total: -25.52 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.55 Total: -24.78 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -3.90 Total: 18.57 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.62 -6.93 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.677 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds