Wall clock time and date at job start Mon Mar 30 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00048 * 2 1 4 4 H 1.48498 * 109.47240 * 270.00649 * 3 2 1 5 5 H 1.48505 * 109.47233 * 30.00619 * 3 2 1 6 6 H 1.48499 * 109.47119 * 150.00243 * 3 2 1 7 7 C 1.37875 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00535 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99775 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.47135 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.46761 * 59.99476 * 9 7 2 12 12 C 1.34230 * 116.99836 * 90.00637 * 11 9 7 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 9 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 9 15 15 C 1.53889 * 113.58513 * 278.93897 * 14 12 11 16 16 C 1.53431 * 86.82233 * 220.45040 * 15 14 12 17 17 C 1.52460 * 128.60427 * 165.10005 * 16 15 14 18 18 C 1.52454 * 128.51813 * 245.01136 * 16 15 14 19 19 C 1.53253 * 87.71692 * 25.01614 * 16 15 14 20 20 C 1.50695 * 109.46800 * 299.99701 * 9 7 2 21 21 C 1.34517 * 125.78965 * 264.71278 * 20 9 7 22 22 C 1.41380 * 106.84089 * 179.89500 * 21 20 9 23 23 C 1.34513 * 106.83919 * 0.37266 * 22 21 20 24 24 O 1.34300 * 108.42576 * 359.77082 * 23 22 21 25 25 H 0.96994 * 119.99587 * 359.97438 * 1 2 3 26 26 H 1.09009 * 112.83020 * 50.04989 * 14 12 11 27 27 H 1.08997 * 113.64802 * 334.91933 * 15 14 12 28 28 H 1.09001 * 113.64415 * 105.92942 * 15 14 12 29 29 H 1.09001 * 117.51239 * 224.96257 * 17 16 15 30 30 H 1.09006 * 117.51192 * 10.06012 * 17 16 15 31 31 H 1.09000 * 117.51746 * 349.80881 * 18 16 15 32 32 H 1.09000 * 117.51410 * 134.87101 * 18 16 15 33 33 H 1.09001 * 113.64287 * 220.48008 * 19 16 15 34 34 H 1.09006 * 113.72662 * 89.49914 * 19 16 15 35 35 H 1.07994 * 126.57709 * 0.02671 * 21 20 9 36 36 H 1.08000 * 126.57782 * 180.16570 * 22 21 20 37 37 H 1.08008 * 125.78728 * 179.75388 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 1 3.8749 -2.2218 -0.0010 11 8 3.9960 -0.5098 1.1844 12 6 4.1996 -1.2585 2.2797 13 8 3.9799 -2.4462 2.2490 14 6 4.6958 -0.6166 3.5497 15 6 6.2172 -0.3859 3.5693 16 6 6.1799 -0.8321 5.0368 17 6 7.3404 -1.2447 5.9354 18 6 6.4958 -0.0164 6.2855 19 6 4.9047 -1.6137 4.7029 20 6 4.0134 -0.4835 -1.2316 21 6 4.3699 -1.0702 -2.3884 22 6 4.7730 -0.0365 -3.2647 23 6 4.6466 1.1192 -2.5882 24 8 4.1861 0.8425 -1.3574 25 1 -0.4849 0.8400 0.0004 26 1 4.1175 0.2630 3.8329 27 1 6.7707 -1.0642 2.9200 28 1 6.5028 0.6576 3.4359 29 1 7.2102 -2.1366 6.5482 30 1 8.3506 -1.0719 5.5643 31 1 6.9505 0.9641 6.1448 32 1 5.8098 -0.1000 7.1284 33 1 4.1397 -1.5534 5.4770 34 1 5.0907 -2.6348 4.3698 35 1 4.3498 -2.1276 -2.6067 36 1 5.1195 -0.1529 -4.2810 37 1 4.8767 2.1030 -2.9701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345546286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:48 Heat of formation + Delta-G solvation = -27.196893 kcal Electronic energy + Delta-G solvation = -21620.996454 eV Core-core repulsion = 18331.791583 eV Total energy + Delta-G solvation = -3289.204871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.55078 -41.64396 -39.90017 -37.49666 -35.10059 -34.56381 -33.96484 -32.32199 -28.74583 -26.83476 -26.53349 -24.53967 -23.28686 -22.81236 -21.55978 -21.34415 -19.49633 -19.34636 -18.78109 -18.23382 -17.64171 -17.09899 -16.79511 -16.27001 -16.05244 -15.67907 -15.47282 -15.05765 -14.13547 -14.00534 -13.60809 -13.59058 -13.45072 -13.43980 -13.17848 -13.01094 -12.67930 -12.51747 -12.28167 -12.15098 -11.68373 -11.36907 -11.30575 -11.19366 -11.00940 -10.87415 -10.55519 -10.54295 -9.31950 -8.55795 -6.75332 0.79368 1.21177 1.33614 1.43487 1.55007 1.75926 2.04498 2.31228 2.44600 2.83977 2.92921 3.34290 3.49951 3.62653 3.80849 3.85859 4.08189 4.19078 4.23387 4.30612 4.36753 4.53462 4.70783 4.77380 4.80198 4.84248 4.92259 5.00373 5.01955 5.04593 5.09381 5.21701 5.25632 5.29336 5.33252 5.66020 5.73360 5.97828 6.26431 6.34494 6.92504 7.05910 8.55706 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.020288 B = 0.005918 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.762061 B = 4730.215818 C = 5160.176577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.040 3.960 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.299 1.299 6 H -0.209 1.209 7 C -0.552 4.552 8 H 0.044 0.956 9 C 0.259 3.741 10 H 0.080 0.920 11 O -0.360 6.360 12 C 0.459 3.541 13 O -0.548 6.548 14 C -0.115 4.115 15 C -0.072 4.072 16 C -0.173 4.173 17 C -0.156 4.156 18 C -0.138 4.138 19 C -0.077 4.077 20 C -0.010 4.010 21 C -0.223 4.223 22 C -0.203 4.203 23 C -0.072 4.072 24 O -0.186 6.186 25 H 0.275 0.725 26 H 0.130 0.870 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.155 0.845 36 H 0.182 0.818 37 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.258 4.515 5.934 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.163 4.163 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.229 1.229 6 H -0.133 1.133 7 C -0.588 4.588 8 H 0.062 0.938 9 C 0.206 3.794 10 H 0.098 0.902 11 O -0.276 6.276 12 C 0.304 3.696 13 O -0.439 6.439 14 C -0.134 4.134 15 C -0.110 4.110 16 C -0.173 4.173 17 C -0.193 4.193 18 C -0.174 4.174 19 C -0.115 4.115 20 C -0.059 4.059 21 C -0.242 4.242 22 C -0.222 4.222 23 C -0.137 4.137 24 O -0.084 6.084 25 H 0.084 0.916 26 H 0.148 0.852 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.172 0.828 36 H 0.199 0.801 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 15.957 4.430 6.091 17.645 hybrid contribution -0.785 -0.012 -0.589 0.981 sum 15.173 4.418 5.502 16.733 Atomic orbital electron populations 1.70037 1.08401 1.29201 1.47567 1.25991 0.95559 1.03757 0.90994 0.85614 0.79809 0.77041 0.79640 1.19116 1.22851 1.13342 1.21172 0.89421 0.94182 1.54056 0.93811 1.18837 0.92413 0.91505 0.76680 0.90186 1.86910 1.75858 1.43306 1.21571 1.24233 0.72965 0.85739 0.86614 1.90532 1.49608 1.18534 1.85204 1.22627 0.99873 1.01709 0.89146 1.22382 0.90856 1.02965 0.94770 1.22009 0.98091 1.04949 0.92299 1.22922 0.95393 0.99380 1.01588 1.22943 1.02340 0.96424 0.95721 1.22399 0.96498 0.97440 0.95122 1.22692 1.02838 0.81388 0.98999 1.21670 1.07541 1.01707 0.93282 1.22066 1.06861 0.91082 1.02156 1.24828 1.03150 1.02303 0.83450 1.84359 1.65182 1.24631 1.34277 0.91616 0.85222 0.89980 0.88773 0.87968 0.87578 0.87204 0.87589 0.89823 0.89906 0.82766 0.80087 0.74921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.76 13.96 21.45 0.30 -57.46 16 2 C 0.04 2.42 5.45 84.65 0.46 2.88 16 3 Si 0.95 47.04 22.92 68.60 1.57 48.61 16 4 H -0.26 -12.45 6.02 99.48 0.60 -11.85 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.21 -9.85 4.91 99.48 0.49 -9.36 16 7 C -0.55 -33.44 9.51 25.60 0.24 -33.19 16 8 H 0.04 2.94 8.06 -2.91 -0.02 2.92 16 9 C 0.26 13.30 2.55 29.10 0.07 13.37 16 10 H 0.08 4.11 7.15 -2.39 -0.02 4.09 16 11 O -0.36 -17.28 6.69 -48.74 -0.33 -17.61 16 12 C 0.46 20.09 7.45 71.23 0.53 20.62 16 13 O -0.55 -26.94 15.12 21.94 0.33 -26.60 16 14 C -0.11 -3.66 4.25 -10.95 -0.05 -3.71 16 15 C -0.07 -1.83 7.66 31.04 0.24 -1.59 16 16 C -0.17 -3.74 3.09 -52.31 -0.16 -3.90 16 17 C -0.16 -2.58 10.53 30.45 0.32 -2.25 16 18 C -0.14 -2.19 10.53 30.45 0.32 -1.87 16 19 C -0.08 -2.13 7.42 30.98 0.23 -1.90 16 20 C -0.01 -0.44 5.33 24.83 0.13 -0.31 16 21 C -0.22 -8.78 10.81 22.19 0.24 -8.54 16 22 C -0.20 -6.49 10.91 22.19 0.24 -6.25 16 23 C -0.07 -2.38 11.72 66.97 0.78 -1.60 16 24 O -0.19 -8.01 4.88 1.02 0.00 -8.01 16 25 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 26 H 0.13 3.86 8.14 -2.38 -0.02 3.84 16 27 H 0.08 2.17 8.09 -2.39 -0.02 2.15 16 28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 2.54 7.44 -2.38 -0.02 2.53 16 35 H 0.15 5.52 8.06 -2.91 -0.02 5.50 16 36 H 0.18 4.19 8.06 -2.91 -0.02 4.17 16 37 H 0.23 5.26 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -74.78 309.03 6.23 -68.55 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.74 Total: 20.76 kcal Atomic # 6 Polarization: -31.85 SS G_CDS: 3.61 Total: -28.24 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.30 Total: -57.46 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: 0.01 Total: -52.22 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.57 Total: 48.61 kcal Total: -74.78 6.23 -68.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.357 kcal (2) G-P(sol) polarization free energy of solvation -74.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds