Wall clock time and date at job start Mon Mar 30 2020 01:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48499 * 109.47136 * 269.99636 * 3 2 1 5 5 H 1.48499 * 109.47078 * 29.99348 * 3 2 1 6 6 H 1.48496 * 109.47272 * 149.99375 * 3 2 1 7 7 C 1.37882 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99839 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.47289 * 60.00053 * 9 7 2 12 12 C 1.34227 * 117.00010 * 89.99830 * 11 9 7 13 13 O 1.20830 * 119.99699 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00298 * 180.02562 * 12 11 9 15 15 C 1.53004 * 109.47613 * 179.97438 * 14 12 11 16 16 H 1.09003 * 110.34007 * 304.17153 * 15 14 12 17 17 C 1.51103 * 110.38555 * 66.45134 * 15 14 12 18 18 C 1.30523 * 111.10278 * 135.24935 * 17 15 14 19 19 C 1.51102 * 111.10306 * 0.02562 * 18 17 15 20 20 C 1.54631 * 104.72843 * 343.56261 * 19 18 17 21 21 C 1.50703 * 109.47227 * 300.00125 * 9 7 2 22 22 C 1.34511 * 125.78969 * 264.71963 * 21 9 7 23 23 C 1.41386 * 106.84165 * 179.88756 * 22 21 9 24 24 C 1.34516 * 106.83662 * 0.37085 * 23 22 21 25 25 O 1.34298 * 108.42340 * 359.77201 * 24 23 22 26 26 H 0.97002 * 119.99998 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47636 * 300.00323 * 14 12 11 28 28 H 1.09002 * 109.47104 * 60.00357 * 14 12 11 29 29 H 1.08001 * 124.45033 * 315.23587 * 17 15 14 30 30 H 1.08000 * 124.44703 * 179.97438 * 18 17 15 31 31 H 1.09008 * 110.38371 * 102.37525 * 19 18 17 32 32 H 1.08999 * 110.38836 * 224.63191 * 19 18 17 33 33 H 1.08997 * 111.04056 * 266.60234 * 20 19 18 34 34 H 1.09003 * 111.03618 * 142.66108 * 20 19 18 35 35 H 1.07996 * 126.57862 * 0.02562 * 22 21 9 36 36 H 1.07998 * 126.58164 * 180.11486 * 23 22 21 37 37 H 1.08000 * 125.78541 * 179.78743 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8748 -2.2218 0.0010 11 8 3.9951 -0.5094 1.1867 12 6 4.1978 -1.2576 2.2825 13 8 3.9788 -2.4455 2.2518 14 6 4.6984 -0.6162 3.5509 15 6 4.8421 -1.6820 4.6392 16 1 3.8970 -2.2055 4.7840 17 6 5.9354 -2.6601 4.2770 18 6 6.7033 -2.9077 5.3029 19 6 6.2499 -2.1364 6.5206 20 6 5.3124 -1.0395 5.9646 21 6 4.0143 -0.4839 -1.2293 22 6 4.3717 -1.0710 -2.3856 23 6 4.7755 -0.0376 -3.2620 24 6 4.6485 1.1184 -2.5860 25 8 4.1871 0.8420 -1.3554 26 1 -0.4850 0.8401 -0.0004 27 1 5.6673 -0.1526 3.3658 28 1 3.9887 0.1435 3.8785 29 1 6.0643 -3.0972 3.2978 30 1 7.5510 -3.5766 5.2842 31 1 5.7067 -2.7899 7.2034 32 1 7.1049 -1.6873 7.0258 33 1 5.8590 -0.1151 5.7784 34 1 4.4713 -0.8665 6.6359 35 1 4.3517 -2.1286 -2.6035 36 1 5.1234 -0.1544 -4.2777 37 1 4.8784 2.1020 -2.9682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345548520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:58 Heat of formation + Delta-G solvation = -44.811774 kcal Electronic energy + Delta-G solvation = -21539.791914 eV Core-core repulsion = 18249.823204 eV Total energy + Delta-G solvation = -3289.968710 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.95331 -39.75712 -38.32137 -35.65378 -32.99743 -32.35184 -31.53130 -30.38633 -28.87951 -26.94242 -25.53948 -22.89137 -21.34784 -20.64683 -20.08435 -19.75514 -18.56166 -17.61053 -17.02276 -16.50110 -15.82726 -15.65923 -15.40432 -15.21686 -14.63828 -14.15977 -13.45991 -13.09843 -12.81272 -12.44775 -12.24759 -11.97960 -11.88236 -11.78471 -11.75915 -11.49666 -11.21963 -11.13315 -11.02184 -10.74118 -10.59177 -10.22655 -9.67247 -9.35712 -9.22699 -9.04882 -8.80674 -8.68902 -7.69693 -6.34711 -4.48453 2.39305 2.41494 3.07388 3.17095 3.24023 3.42375 3.49632 3.79502 4.11965 4.38409 4.66991 4.70188 4.94925 5.03176 5.24617 5.37472 5.48264 5.53684 5.61811 5.63009 5.66543 5.74009 5.84123 5.92093 6.00336 6.13922 6.23274 6.28041 6.35462 6.45315 6.58660 6.66989 6.82916 7.00738 7.11529 7.23038 7.53541 7.85234 8.15604 8.62572 8.77559 9.24997 10.72401 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021646 B = 0.005627 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.256886 B = 4974.786417 C = 5479.434266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.087 3.913 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.219 1.219 7 C -0.536 4.536 8 H 0.090 0.910 9 C 0.250 3.750 10 H 0.090 0.910 11 O -0.359 6.359 12 C 0.459 3.541 13 O -0.516 6.516 14 C -0.110 4.110 15 C -0.059 4.059 16 H 0.093 0.907 17 C -0.134 4.134 18 C -0.190 4.190 19 C -0.097 4.097 20 C -0.121 4.121 21 C 0.035 3.965 22 C -0.230 4.230 23 C -0.205 4.205 24 C -0.076 4.076 25 O -0.164 6.164 26 H 0.271 0.729 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.464 1.142 6.251 13.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.121 4.121 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.228 1.228 6 H -0.144 1.144 7 C -0.571 4.571 8 H 0.108 0.892 9 C 0.198 3.802 10 H 0.108 0.892 11 O -0.277 6.277 12 C 0.302 3.698 13 O -0.406 6.406 14 C -0.148 4.148 15 C -0.077 4.077 16 H 0.111 0.889 17 C -0.152 4.152 18 C -0.208 4.208 19 C -0.134 4.134 20 C -0.159 4.159 21 C -0.016 4.016 22 C -0.249 4.249 23 C -0.224 4.224 24 C -0.143 4.143 25 O -0.062 6.062 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.119 0.881 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 12.146 1.083 6.416 13.780 hybrid contribution 0.109 0.680 -0.617 0.924 sum 12.255 1.763 5.800 13.672 Atomic orbital electron populations 1.69931 1.06818 1.28159 1.45342 1.25198 0.94928 1.00406 0.91596 0.86570 0.80851 0.81541 0.79116 1.20157 1.22751 1.14427 1.21100 0.86932 0.95746 1.53327 0.89232 1.19240 0.94721 0.90896 0.75366 0.89241 1.86948 1.76046 1.43406 1.21268 1.23271 0.74370 0.86044 0.86114 1.90563 1.48310 1.16941 1.84771 1.21441 1.03281 0.99258 0.90852 1.20912 0.99388 0.94358 0.93077 0.88862 1.23379 0.94939 0.97769 0.99119 1.23198 1.00320 1.01914 0.95331 1.21311 0.98701 0.96568 0.96792 1.22546 0.99217 0.98194 0.95934 1.23110 0.98906 0.80459 0.99099 1.21226 1.09679 1.00243 0.93763 1.21626 1.07602 0.92465 1.00743 1.23789 1.05322 0.99967 0.85208 1.84487 1.64302 1.25272 1.32139 0.91978 0.88489 0.88129 0.85584 0.86222 0.91044 0.91568 0.90833 0.90752 0.83962 0.84224 0.79504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.21 13.96 55.43 0.77 -25.43 16 2 C 0.09 2.51 5.45 -17.82 -0.10 2.42 16 3 Si 0.89 22.35 22.92 -169.99 -3.90 18.46 16 4 H -0.27 -6.81 6.02 56.52 0.34 -6.47 16 5 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.22 -5.31 4.91 56.52 0.28 -5.03 16 7 C -0.54 -15.28 9.51 -34.44 -0.33 -15.61 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 C 0.25 6.17 2.55 -29.03 -0.07 6.09 16 10 H 0.09 2.15 7.16 -51.93 -0.37 1.77 16 11 O -0.36 -8.39 6.69 -42.05 -0.28 -8.67 16 12 C 0.46 9.51 7.69 36.00 0.28 9.79 16 13 O -0.52 -11.71 13.90 -18.75 -0.26 -11.97 16 14 C -0.11 -1.70 5.23 -27.88 -0.15 -1.85 16 15 C -0.06 -0.83 2.54 -90.72 -0.23 -1.06 16 16 H 0.09 1.44 8.01 -51.93 -0.42 1.03 16 17 C -0.13 -1.89 9.19 -35.70 -0.33 -2.22 16 18 C -0.19 -2.24 10.77 -35.70 -0.38 -2.63 16 19 C -0.10 -0.99 6.81 -26.83 -0.18 -1.17 16 20 C -0.12 -1.31 6.71 -25.02 -0.17 -1.48 16 21 C 0.03 0.80 5.33 -35.62 -0.19 0.62 16 22 C -0.23 -4.70 10.81 -39.70 -0.43 -5.13 16 23 C -0.21 -3.68 10.91 -39.70 -0.43 -4.12 16 24 C -0.08 -1.42 11.72 29.42 0.34 -1.08 16 25 O -0.16 -3.73 4.88 2.03 0.01 -3.72 16 26 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.13 1.96 7.31 -52.49 -0.38 1.58 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.72 7.91 -51.93 -0.41 0.31 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.14 2.61 8.06 -52.49 -0.42 2.19 16 36 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.19 2.66 8.06 -52.49 -0.42 2.24 16 LS Contribution 305.31 15.07 4.60 4.60 Total: -1.00 -32.45 305.31 -6.55 -39.00 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.13 Total: 5.16 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -2.37 Total: -17.42 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: 0.77 Total: -25.43 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.53 Total: -24.36 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -3.90 Total: 18.46 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.45 -6.55 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345548520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.813 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds