Wall clock time and date at job start Mon Mar 30 2020 01:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48499 * 109.47136 * 269.99636 * 3 2 1 5 5 H 1.48499 * 109.47078 * 29.99348 * 3 2 1 6 6 H 1.48496 * 109.47272 * 149.99375 * 3 2 1 7 7 C 1.37882 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99839 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.47289 * 60.00053 * 9 7 2 12 12 C 1.34227 * 117.00010 * 89.99830 * 11 9 7 13 13 O 1.20830 * 119.99699 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00298 * 180.02562 * 12 11 9 15 15 C 1.53004 * 109.47613 * 179.97438 * 14 12 11 16 16 H 1.09003 * 110.34007 * 304.17153 * 15 14 12 17 17 C 1.51103 * 110.38555 * 66.45134 * 15 14 12 18 18 C 1.30523 * 111.10278 * 135.24935 * 17 15 14 19 19 C 1.51102 * 111.10306 * 0.02562 * 18 17 15 20 20 C 1.54631 * 104.72843 * 343.56261 * 19 18 17 21 21 C 1.50703 * 109.47227 * 300.00125 * 9 7 2 22 22 C 1.34511 * 125.78969 * 264.71963 * 21 9 7 23 23 C 1.41386 * 106.84165 * 179.88756 * 22 21 9 24 24 C 1.34516 * 106.83662 * 0.37085 * 23 22 21 25 25 O 1.34298 * 108.42340 * 359.77201 * 24 23 22 26 26 H 0.97002 * 119.99998 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47636 * 300.00323 * 14 12 11 28 28 H 1.09002 * 109.47104 * 60.00357 * 14 12 11 29 29 H 1.08001 * 124.45033 * 315.23587 * 17 15 14 30 30 H 1.08000 * 124.44703 * 179.97438 * 18 17 15 31 31 H 1.09008 * 110.38371 * 102.37525 * 19 18 17 32 32 H 1.08999 * 110.38836 * 224.63191 * 19 18 17 33 33 H 1.08997 * 111.04056 * 266.60234 * 20 19 18 34 34 H 1.09003 * 111.03618 * 142.66108 * 20 19 18 35 35 H 1.07996 * 126.57862 * 0.02562 * 22 21 9 36 36 H 1.07998 * 126.58164 * 180.11486 * 23 22 21 37 37 H 1.08000 * 125.78541 * 179.78743 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8748 -2.2218 0.0010 11 8 3.9951 -0.5094 1.1867 12 6 4.1978 -1.2576 2.2825 13 8 3.9788 -2.4455 2.2518 14 6 4.6984 -0.6162 3.5509 15 6 4.8421 -1.6820 4.6392 16 1 3.8970 -2.2055 4.7840 17 6 5.9354 -2.6601 4.2770 18 6 6.7033 -2.9077 5.3029 19 6 6.2499 -2.1364 6.5206 20 6 5.3124 -1.0395 5.9646 21 6 4.0143 -0.4839 -1.2293 22 6 4.3717 -1.0710 -2.3856 23 6 4.7755 -0.0376 -3.2620 24 6 4.6485 1.1184 -2.5860 25 8 4.1871 0.8420 -1.3554 26 1 -0.4850 0.8401 -0.0004 27 1 5.6673 -0.1526 3.3658 28 1 3.9887 0.1435 3.8785 29 1 6.0643 -3.0972 3.2978 30 1 7.5510 -3.5766 5.2842 31 1 5.7067 -2.7899 7.2034 32 1 7.1049 -1.6873 7.0258 33 1 5.8590 -0.1151 5.7784 34 1 4.4713 -0.8665 6.6359 35 1 4.3517 -2.1286 -2.6035 36 1 5.1234 -0.1544 -4.2777 37 1 4.8784 2.1020 -2.9682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345548520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:58 Heat of formation + Delta-G solvation = -64.325849 kcal Electronic energy + Delta-G solvation = -21540.638108 eV Core-core repulsion = 18249.823204 eV Total energy + Delta-G solvation = -3290.814903 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.55014 -41.34757 -39.50168 -37.43295 -35.07684 -33.96912 -32.90259 -32.04546 -29.79261 -28.71280 -26.82698 -24.76311 -22.91161 -21.98648 -21.46756 -21.23242 -19.75761 -19.32666 -18.75676 -18.22052 -17.52841 -16.98810 -16.82752 -16.72064 -16.15848 -15.70850 -15.13435 -14.95813 -14.13115 -14.00224 -13.81882 -13.43617 -13.35050 -13.23960 -12.83904 -12.77307 -12.69557 -12.66631 -12.15319 -12.08799 -12.02518 -11.74080 -11.63416 -11.20374 -11.08860 -10.88241 -10.55262 -9.79114 -9.31939 -8.54830 -6.74424 0.79646 1.23305 1.35629 1.39648 1.50278 1.56403 1.76165 2.08818 2.32242 2.45195 2.90580 3.60896 3.71868 3.91143 3.94925 4.17467 4.20470 4.31533 4.33900 4.38753 4.55890 4.61013 4.66312 4.73739 4.92060 4.96989 4.99176 5.04994 5.09640 5.10299 5.25976 5.29874 5.41726 5.67094 5.68716 5.76638 6.00050 6.00262 6.26542 6.35550 6.96501 7.08422 8.56703 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021646 B = 0.005627 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.256886 B = 4974.786417 C = 5479.434266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.040 3.960 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.299 1.299 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.042 0.958 9 C 0.261 3.739 10 H 0.080 0.920 11 O -0.365 6.365 12 C 0.447 3.553 13 O -0.544 6.544 14 C -0.102 4.102 15 C -0.060 4.060 16 H 0.067 0.933 17 C -0.175 4.175 18 C -0.164 4.164 19 C -0.097 4.097 20 C -0.114 4.114 21 C -0.010 4.010 22 C -0.224 4.224 23 C -0.204 4.204 24 C -0.072 4.072 25 O -0.186 6.186 26 H 0.275 0.725 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.154 0.846 36 H 0.181 0.819 37 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.348 3.269 6.688 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.163 4.163 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.228 1.228 6 H -0.132 1.132 7 C -0.588 4.588 8 H 0.061 0.939 9 C 0.208 3.792 10 H 0.098 0.902 11 O -0.282 6.282 12 C 0.292 3.708 13 O -0.435 6.435 14 C -0.140 4.140 15 C -0.078 4.078 16 H 0.085 0.915 17 C -0.193 4.193 18 C -0.181 4.181 19 C -0.134 4.134 20 C -0.151 4.151 21 C -0.059 4.059 22 C -0.243 4.243 23 C -0.222 4.222 24 C -0.137 4.137 25 O -0.084 6.084 26 H 0.084 0.916 27 H 0.141 0.859 28 H 0.134 0.866 29 H 0.117 0.883 30 H 0.154 0.846 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.172 0.828 36 H 0.199 0.801 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 15.044 3.189 6.861 16.839 hybrid contribution -0.683 -0.146 -0.788 1.053 sum 14.361 3.043 6.072 15.887 Atomic orbital electron populations 1.70038 1.08437 1.29198 1.47620 1.25999 0.95549 1.03786 0.90992 0.85606 0.79829 0.76992 0.79615 1.19264 1.22793 1.13235 1.21165 0.89451 0.94127 1.54056 0.93926 1.18790 0.92341 0.91433 0.76647 0.90239 1.86890 1.76223 1.43479 1.21632 1.24481 0.73481 0.85997 0.86825 1.90548 1.49423 1.18390 1.85093 1.21629 1.04523 0.99771 0.88029 1.20931 0.98405 0.94057 0.94423 0.91496 1.23235 0.96882 1.00117 0.99051 1.23542 0.99194 1.00318 0.95096 1.21396 0.99534 0.96367 0.96060 1.22568 0.99956 0.98771 0.93808 1.22730 1.02751 0.81375 0.99068 1.21667 1.07612 1.01680 0.93346 1.22069 1.06882 0.91113 1.02161 1.24827 1.03140 1.02293 0.83475 1.84358 1.65157 1.24647 1.34274 0.91630 0.85873 0.86588 0.88289 0.84597 0.90093 0.89054 0.89176 0.89470 0.82826 0.80119 0.74908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.66 13.96 21.45 0.30 -57.36 16 2 C 0.04 2.39 5.45 84.66 0.46 2.85 16 3 Si 0.95 46.75 22.92 68.60 1.57 48.32 16 4 H -0.27 -12.48 6.02 99.48 0.60 -11.88 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.21 -9.68 4.91 99.48 0.49 -9.19 16 7 C -0.55 -33.29 9.51 25.60 0.24 -33.05 16 8 H 0.04 2.86 8.06 -2.91 -0.02 2.84 16 9 C 0.26 13.34 2.55 29.10 0.07 13.42 16 10 H 0.08 4.07 7.16 -2.39 -0.02 4.05 16 11 O -0.36 -17.30 6.69 -48.72 -0.33 -17.62 16 12 C 0.45 19.04 7.69 71.23 0.55 19.59 16 13 O -0.54 -26.12 13.90 21.95 0.31 -25.82 16 14 C -0.10 -3.06 5.23 29.85 0.16 -2.91 16 15 C -0.06 -1.64 2.54 -10.86 -0.03 -1.67 16 16 H 0.07 2.14 8.01 -2.39 -0.02 2.12 16 17 C -0.17 -4.91 9.19 26.27 0.24 -4.67 16 18 C -0.16 -3.53 10.77 26.27 0.28 -3.25 16 19 C -0.10 -1.64 6.81 30.53 0.21 -1.43 16 20 C -0.11 -2.11 6.71 31.70 0.21 -1.90 16 21 C -0.01 -0.44 5.33 24.83 0.13 -0.31 16 22 C -0.22 -8.85 10.81 22.19 0.24 -8.61 16 23 C -0.20 -6.54 10.91 22.19 0.24 -6.30 16 24 C -0.07 -2.39 11.72 66.97 0.78 -1.60 16 25 O -0.19 -8.00 4.88 1.06 0.01 -8.00 16 26 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 27 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 28 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 29 H 0.10 3.27 7.31 -2.91 -0.02 3.25 16 30 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.41 7.91 -2.39 -0.02 1.39 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.15 5.53 8.06 -2.91 -0.02 5.51 16 36 H 0.18 4.22 8.06 -2.91 -0.02 4.20 16 37 H 0.23 5.27 8.06 -2.91 -0.02 5.25 16 Total: -1.00 -75.27 305.31 6.39 -68.88 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.73 Total: 21.44 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 3.80 Total: -29.84 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.30 Total: -57.36 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -0.02 Total: -51.44 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.57 Total: 48.32 kcal Total: -75.27 6.39 -68.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345548520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.553 kcal (2) G-P(sol) polarization free energy of solvation -75.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds