Wall clock time and date at job start Mon Mar 30 2020 01:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00595 * 2 1 4 4 H 1.48495 * 109.47468 * 240.00554 * 3 2 1 5 5 H 1.48500 * 109.46839 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47156 * 120.00153 * 3 2 1 7 7 C 1.37881 * 119.99482 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99905 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00366 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.46940 * 60.00332 * 9 7 2 11 11 O 1.45193 * 109.47117 * 180.02562 * 9 7 2 12 12 C 1.34228 * 117.00172 * 209.99689 * 11 9 7 13 13 O 1.20826 * 119.99676 * 0.02562 * 12 11 9 14 14 C 1.50699 * 120.00528 * 180.02562 * 12 11 9 15 15 C 1.52996 * 109.47565 * 180.02562 * 14 12 11 16 16 H 1.09002 * 110.34782 * 52.70753 * 15 14 12 17 17 C 1.51104 * 110.38601 * 290.30652 * 15 14 12 18 18 C 1.30526 * 111.10266 * 224.75506 * 17 15 14 19 19 C 1.51103 * 111.10462 * 359.97438 * 18 17 15 20 20 C 1.54629 * 104.72301 * 16.44449 * 19 18 17 21 21 C 1.50700 * 109.46771 * 300.00126 * 9 7 2 22 22 C 1.34520 * 125.78639 * 100.00429 * 21 9 7 23 23 C 1.41381 * 106.83580 * 180.22245 * 22 21 9 24 24 C 1.34513 * 106.84363 * 359.57150 * 23 22 21 25 25 O 1.34302 * 125.79150 * 279.95470 * 21 9 7 26 26 H 0.97007 * 119.99558 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47200 * 300.00295 * 14 12 11 28 28 H 1.08998 * 109.47094 * 59.99744 * 14 12 11 29 29 H 1.07997 * 124.44871 * 44.72081 * 17 15 14 30 30 H 1.08001 * 124.45012 * 179.97438 * 18 17 15 31 31 H 1.08997 * 110.38582 * 257.62948 * 19 18 17 32 32 H 1.09001 * 110.38359 * 135.25666 * 19 18 17 33 33 H 1.09007 * 111.03402 * 217.33197 * 20 19 18 34 34 H 1.08994 * 111.07500 * 93.41401 * 20 19 18 35 35 H 1.08002 * 126.57789 * 359.95308 * 22 21 9 36 36 H 1.08009 * 126.57222 * 179.73218 * 23 22 21 37 37 H 1.07999 * 125.78721 * 180.19275 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 8 2.1944 -3.6028 -0.0005 12 6 1.8031 -4.7391 -0.5985 13 8 0.7086 -4.8090 -1.1055 14 6 2.7288 -5.9276 -0.6374 15 6 2.0452 -7.0828 -1.3716 16 1 1.6841 -6.7521 -2.3455 17 6 0.9063 -7.6319 -0.5441 18 6 0.9198 -8.9370 -0.5334 19 6 2.0695 -9.4760 -1.3525 20 6 3.0212 -8.2709 -1.5346 21 6 0.3850 -2.5792 1.2303 22 6 -0.9352 -2.3261 1.2811 23 6 -1.3373 -2.5161 2.6231 24 6 -0.2407 -2.8832 3.3102 25 8 0.8002 -2.9162 2.4622 26 1 -0.4850 0.8401 0.0004 27 1 3.6458 -5.6569 -1.1608 28 1 2.9687 -6.2348 0.3805 29 1 0.1773 -7.0242 -0.0287 30 1 0.2033 -9.5511 -0.0082 31 1 1.7136 -9.8285 -2.3206 32 1 2.5734 -10.2802 -0.8164 33 1 3.4713 -8.2743 -2.5274 34 1 3.7878 -8.2563 -0.7600 35 1 -1.5660 -2.0299 0.4559 36 1 -2.3343 -2.3928 3.0199 37 1 -0.2029 -3.1090 4.3657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345548523.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:00 Heat of formation + Delta-G solvation = -60.389173 kcal Electronic energy + Delta-G solvation = -21326.289700 eV Core-core repulsion = 18035.645504 eV Total energy + Delta-G solvation = -3290.644196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.34460 -39.82585 -38.36416 -35.66310 -33.27311 -31.70761 -31.57564 -29.59342 -28.90798 -26.75095 -25.57515 -22.98427 -20.92888 -20.50427 -20.13848 -19.26817 -18.56053 -17.19953 -16.66904 -16.40860 -15.93423 -15.38890 -15.14743 -14.95691 -14.58435 -14.35710 -13.35689 -12.92765 -12.65769 -12.04619 -11.94115 -11.84604 -11.79163 -11.68905 -11.56964 -11.34101 -11.25964 -11.14021 -11.02783 -10.95884 -10.70326 -10.37835 -10.06707 -9.60823 -9.39232 -8.83723 -8.81710 -8.64526 -7.25697 -6.21081 -4.39047 2.37470 2.87383 2.96829 3.23396 3.26798 3.28598 3.56745 3.95830 4.19328 4.28312 4.62391 4.66781 4.91215 5.07200 5.23770 5.33953 5.49515 5.57074 5.66670 5.71989 5.78127 5.84707 5.91010 5.96847 6.06928 6.19808 6.29422 6.38708 6.65245 6.74629 6.97796 6.99025 7.15563 7.23463 7.41675 7.69804 7.70778 7.87766 8.36958 8.53991 8.80275 9.27866 10.77700 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.005113 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.849568 B = 5474.590798 C = 6299.461122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.070 3.930 3 Si 0.914 3.086 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.077 0.923 9 C 0.298 3.702 10 H 0.078 0.922 11 O -0.351 6.351 12 C 0.452 3.548 13 O -0.515 6.515 14 C -0.107 4.107 15 C -0.059 4.059 16 H 0.093 0.907 17 C -0.137 4.137 18 C -0.187 4.187 19 C -0.097 4.097 20 C -0.121 4.121 21 C 0.028 3.972 22 C -0.180 4.180 23 C -0.217 4.217 24 C -0.089 4.089 25 O -0.177 6.177 26 H 0.269 0.731 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.262 -13.083 0.082 13.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.095 0.905 9 C 0.244 3.756 10 H 0.096 0.904 11 O -0.267 6.267 12 C 0.295 3.705 13 O -0.404 6.404 14 C -0.145 4.145 15 C -0.077 4.077 16 H 0.111 0.889 17 C -0.155 4.155 18 C -0.205 4.205 19 C -0.134 4.134 20 C -0.159 4.159 21 C -0.023 4.023 22 C -0.199 4.199 23 C -0.237 4.237 24 C -0.157 4.157 25 O -0.073 6.073 26 H 0.079 0.921 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.055 -12.994 0.005 13.349 hybrid contribution -0.275 1.259 0.302 1.324 sum 2.779 -11.735 0.307 12.064 Atomic orbital electron populations 1.70027 1.05917 1.27746 1.46547 1.24944 0.95127 0.99540 0.94010 0.86292 0.79350 0.81329 0.78999 1.19720 1.20936 1.19858 1.20863 0.94102 0.87660 1.54293 0.90516 1.19150 0.85752 0.81923 0.88740 0.90418 1.86550 1.48414 1.22152 1.69584 1.23515 0.86934 0.84963 0.75132 1.90609 1.22724 1.83349 1.43741 1.21395 0.98400 0.90995 1.03695 1.20915 0.93791 0.93691 0.99315 0.88942 1.23365 0.98359 0.95807 0.97929 1.23202 0.99985 0.96159 1.01178 1.21314 0.94771 0.97927 0.99382 1.22548 0.97346 0.93797 1.02166 1.23558 0.94096 1.00101 0.84548 1.21216 0.94871 1.07074 0.96779 1.21685 0.98947 1.07892 0.95141 1.23598 0.86142 1.10319 0.95634 1.83990 1.36543 1.68601 1.18215 0.92123 0.87944 0.88127 0.85655 0.86152 0.91018 0.91484 0.90768 0.90735 0.84158 0.85174 0.79913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.09 10.95 55.43 0.61 -23.48 16 2 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 3 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -14.75 8.89 -34.44 -0.31 -15.05 16 8 H 0.08 2.08 7.81 -52.48 -0.41 1.67 16 9 C 0.30 7.91 2.42 -29.03 -0.07 7.84 16 10 H 0.08 2.21 7.15 -51.93 -0.37 1.84 16 11 O -0.35 -8.30 9.85 -41.30 -0.41 -8.70 16 12 C 0.45 9.17 7.72 36.01 0.28 9.45 16 13 O -0.51 -11.65 14.14 -18.75 -0.27 -11.92 16 14 C -0.11 -1.54 5.20 -27.89 -0.15 -1.69 16 15 C -0.06 -0.78 2.52 -90.73 -0.23 -1.01 16 16 H 0.09 1.32 7.91 -51.93 -0.41 0.91 16 17 C -0.14 -1.93 9.27 -35.70 -0.33 -2.26 16 18 C -0.19 -2.20 10.77 -35.70 -0.38 -2.59 16 19 C -0.10 -0.95 6.81 -26.83 -0.18 -1.13 16 20 C -0.12 -1.21 6.71 -25.02 -0.17 -1.37 16 21 C 0.03 0.73 5.53 -35.62 -0.20 0.54 16 22 C -0.18 -4.51 9.18 -39.70 -0.36 -4.88 16 23 C -0.22 -4.68 10.91 -39.70 -0.43 -5.12 16 24 C -0.09 -1.86 12.09 29.42 0.36 -1.50 16 25 O -0.18 -4.38 10.65 4.42 0.05 -4.34 16 26 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.10 1.33 8.13 -51.93 -0.42 0.91 16 29 H 0.13 2.04 7.58 -52.49 -0.40 1.64 16 30 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16 35 H 0.14 3.60 7.87 -52.49 -0.41 3.19 16 36 H 0.13 2.38 8.06 -52.48 -0.42 1.95 16 37 H 0.18 2.88 8.06 -52.49 -0.42 2.46 16 LS Contribution 319.17 15.07 4.81 4.81 Total: -1.00 -30.94 319.17 -7.43 -38.37 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.93 Total: 6.31 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -2.27 Total: -16.97 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.61 Total: -23.48 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.62 Total: -24.96 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.94 -7.43 -38.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345548523.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.017 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds