Wall clock time and date at job start Mon Mar 30 2020 01:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00595 * 2 1 4 4 H 1.48495 * 109.47468 * 240.00554 * 3 2 1 5 5 H 1.48500 * 109.46839 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47156 * 120.00153 * 3 2 1 7 7 C 1.37881 * 119.99482 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99905 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00366 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.46940 * 60.00332 * 9 7 2 11 11 O 1.45193 * 109.47117 * 180.02562 * 9 7 2 12 12 C 1.34228 * 117.00172 * 209.99689 * 11 9 7 13 13 O 1.20826 * 119.99676 * 0.02562 * 12 11 9 14 14 C 1.50699 * 120.00528 * 180.02562 * 12 11 9 15 15 C 1.52996 * 109.47565 * 180.02562 * 14 12 11 16 16 H 1.09002 * 110.34782 * 52.70753 * 15 14 12 17 17 C 1.51104 * 110.38601 * 290.30652 * 15 14 12 18 18 C 1.30526 * 111.10266 * 224.75506 * 17 15 14 19 19 C 1.51103 * 111.10462 * 359.97438 * 18 17 15 20 20 C 1.54629 * 104.72301 * 16.44449 * 19 18 17 21 21 C 1.50700 * 109.46771 * 300.00126 * 9 7 2 22 22 C 1.34520 * 125.78639 * 100.00429 * 21 9 7 23 23 C 1.41381 * 106.83580 * 180.22245 * 22 21 9 24 24 C 1.34513 * 106.84363 * 359.57150 * 23 22 21 25 25 O 1.34302 * 125.79150 * 279.95470 * 21 9 7 26 26 H 0.97007 * 119.99558 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47200 * 300.00295 * 14 12 11 28 28 H 1.08998 * 109.47094 * 59.99744 * 14 12 11 29 29 H 1.07997 * 124.44871 * 44.72081 * 17 15 14 30 30 H 1.08001 * 124.45012 * 179.97438 * 18 17 15 31 31 H 1.08997 * 110.38582 * 257.62948 * 19 18 17 32 32 H 1.09001 * 110.38359 * 135.25666 * 19 18 17 33 33 H 1.09007 * 111.03402 * 217.33197 * 20 19 18 34 34 H 1.08994 * 111.07500 * 93.41401 * 20 19 18 35 35 H 1.08002 * 126.57789 * 359.95308 * 22 21 9 36 36 H 1.08009 * 126.57222 * 179.73218 * 23 22 21 37 37 H 1.07999 * 125.78721 * 180.19275 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 8 2.1944 -3.6028 -0.0005 12 6 1.8031 -4.7391 -0.5985 13 8 0.7086 -4.8090 -1.1055 14 6 2.7288 -5.9276 -0.6374 15 6 2.0452 -7.0828 -1.3716 16 1 1.6841 -6.7521 -2.3455 17 6 0.9063 -7.6319 -0.5441 18 6 0.9198 -8.9370 -0.5334 19 6 2.0695 -9.4760 -1.3525 20 6 3.0212 -8.2709 -1.5346 21 6 0.3850 -2.5792 1.2303 22 6 -0.9352 -2.3261 1.2811 23 6 -1.3373 -2.5161 2.6231 24 6 -0.2407 -2.8832 3.3102 25 8 0.8002 -2.9162 2.4622 26 1 -0.4850 0.8401 0.0004 27 1 3.6458 -5.6569 -1.1608 28 1 2.9687 -6.2348 0.3805 29 1 0.1773 -7.0242 -0.0287 30 1 0.2033 -9.5511 -0.0082 31 1 1.7136 -9.8285 -2.3206 32 1 2.5734 -10.2802 -0.8164 33 1 3.4713 -8.2743 -2.5274 34 1 3.7878 -8.2563 -0.7600 35 1 -1.5660 -2.0299 0.4559 36 1 -2.3343 -2.3928 3.0199 37 1 -0.2029 -3.1090 4.3657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345548523.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:59 Heat of formation + Delta-G solvation = -77.045422 kcal Electronic energy + Delta-G solvation = -21327.011969 eV Core-core repulsion = 18035.645504 eV Total energy + Delta-G solvation = -3291.366465 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.19847 -41.39855 -39.50703 -37.44155 -35.29392 -33.57119 -32.80950 -31.45083 -29.79751 -28.63882 -26.84933 -24.85957 -22.54174 -22.12474 -21.31111 -21.04307 -19.66603 -19.06033 -18.48521 -18.06518 -17.37254 -16.95145 -16.65234 -16.53110 -16.32517 -15.72487 -14.99766 -14.57131 -14.19934 -13.62371 -13.56177 -13.50296 -13.20156 -13.09766 -12.92709 -12.80262 -12.79363 -12.67472 -12.23229 -12.09922 -12.04739 -11.97618 -11.74203 -11.38425 -11.25170 -10.81183 -10.54214 -9.80804 -9.13915 -8.25036 -6.54020 1.07991 1.32822 1.37049 1.38971 1.43547 1.50460 1.89212 2.12124 2.39797 2.41823 3.00222 3.63030 3.70534 3.94608 3.98319 4.20367 4.32427 4.37566 4.44676 4.56118 4.58852 4.65723 4.68340 4.72540 4.97399 4.99010 5.09807 5.13498 5.29144 5.31155 5.40677 5.42765 5.45793 5.66311 5.68335 5.82463 5.96566 5.97525 6.46967 6.57634 6.94760 7.18673 8.71916 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.005113 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.849568 B = 5474.590798 C = 6299.461122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.024 3.976 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.559 4.559 8 H 0.075 0.925 9 C 0.300 3.700 10 H 0.040 0.960 11 O -0.361 6.361 12 C 0.442 3.558 13 O -0.546 6.546 14 C -0.096 4.096 15 C -0.058 4.058 16 H 0.072 0.928 17 C -0.180 4.180 18 C -0.162 4.162 19 C -0.097 4.097 20 C -0.112 4.112 21 C -0.001 4.001 22 C -0.196 4.196 23 C -0.227 4.227 24 C -0.071 4.071 25 O -0.195 6.195 26 H 0.270 0.730 27 H 0.131 0.869 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.166 0.834 37 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.760 -14.377 1.284 15.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.595 4.595 8 H 0.093 0.907 9 C 0.246 3.754 10 H 0.058 0.942 11 O -0.278 6.278 12 C 0.287 3.713 13 O -0.437 6.437 14 C -0.133 4.133 15 C -0.076 4.076 16 H 0.090 0.910 17 C -0.199 4.199 18 C -0.180 4.180 19 C -0.133 4.133 20 C -0.149 4.149 21 C -0.052 4.052 22 C -0.215 4.215 23 C -0.246 4.246 24 C -0.137 4.137 25 O -0.092 6.092 26 H 0.079 0.921 27 H 0.149 0.851 28 H 0.136 0.864 29 H 0.108 0.892 30 H 0.151 0.849 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.138 0.862 36 H 0.183 0.817 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.555 -14.313 1.198 15.068 hybrid contribution -0.848 1.536 -0.043 1.755 sum 3.707 -12.778 1.155 13.355 Atomic orbital electron populations 1.70169 1.07278 1.28530 1.46682 1.25849 0.96027 1.02862 0.93176 0.85256 0.78172 0.76794 0.79370 1.18596 1.20196 1.19383 1.21143 0.94181 0.88812 1.55407 0.90732 1.18705 0.85726 0.82894 0.88033 0.94222 1.86540 1.48001 1.22780 1.70486 1.24821 0.87589 0.85175 0.73690 1.90586 1.24502 1.83647 1.44920 1.21612 0.97898 0.88408 1.05395 1.20938 0.94434 0.94461 0.97783 0.90980 1.23224 0.99438 0.96742 1.00454 1.23555 0.99973 0.95261 0.99221 1.21404 0.93831 0.98358 0.99751 1.22572 0.96821 0.91606 1.03878 1.23343 0.94406 1.02254 0.85152 1.21289 0.94708 1.07292 0.98247 1.22035 1.01092 1.08089 0.93382 1.24684 0.84626 1.07221 0.97181 1.83960 1.38127 1.69006 1.18101 0.92055 0.85109 0.86384 0.89242 0.84912 0.89864 0.89058 0.88921 0.89134 0.86158 0.81693 0.74346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.21 10.95 21.45 0.23 -50.98 16 2 C 0.02 1.34 5.30 84.66 0.45 1.78 16 3 Si 0.98 43.27 29.54 68.60 2.03 45.30 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.56 -32.17 8.89 25.60 0.23 -31.95 16 8 H 0.07 4.18 7.81 -2.91 -0.02 4.16 16 9 C 0.30 16.94 2.42 29.10 0.07 17.01 16 10 H 0.04 2.48 7.15 -2.39 -0.02 2.46 16 11 O -0.36 -17.96 9.85 -49.43 -0.49 -18.45 16 12 C 0.44 18.89 7.72 71.24 0.55 19.44 16 13 O -0.55 -26.64 14.14 21.96 0.31 -26.33 16 14 C -0.10 -2.73 5.20 29.85 0.16 -2.57 16 15 C -0.06 -1.50 2.52 -10.86 -0.03 -1.53 16 16 H 0.07 2.13 7.91 -2.39 -0.02 2.11 16 17 C -0.18 -5.19 9.27 26.26 0.24 -4.95 16 18 C -0.16 -3.57 10.77 26.26 0.28 -3.28 16 19 C -0.10 -1.56 6.81 30.53 0.21 -1.36 16 20 C -0.11 -1.88 6.71 31.70 0.21 -1.66 16 21 C 0.00 -0.05 5.53 24.83 0.14 0.08 16 22 C -0.20 -10.20 9.18 22.19 0.20 -9.99 16 23 C -0.23 -9.59 10.91 22.19 0.24 -9.35 16 24 C -0.07 -2.81 12.09 66.97 0.81 -2.00 16 25 O -0.19 -9.69 10.65 -1.23 -0.01 -9.70 16 26 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 27 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 28 H 0.12 2.98 8.13 -2.39 -0.02 2.96 16 29 H 0.09 3.17 7.58 -2.91 -0.02 3.15 16 30 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.09 1.27 7.91 -2.39 -0.02 1.25 16 35 H 0.12 6.62 7.87 -2.91 -0.02 6.60 16 36 H 0.17 5.65 8.06 -2.91 -0.02 5.63 16 37 H 0.24 6.43 8.06 -2.91 -0.02 6.41 16 Total: -1.00 -72.07 319.17 6.90 -65.18 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 1.06 Total: 25.31 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 3.76 Total: -30.32 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.23 Total: -50.98 kcal Atomic # 8 Polarization: -54.29 SS G_CDS: -0.19 Total: -54.48 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -72.07 6.90 -65.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345548523.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.868 kcal (2) G-P(sol) polarization free energy of solvation -72.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds