Wall clock time and date at job start Mon Mar 30 2020 01:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99868 * 2 1 4 4 H 1.48510 * 109.47260 * 264.81043 * 3 2 1 5 5 H 1.48504 * 109.47464 * 24.81070 * 3 2 1 6 6 H 1.48505 * 109.47272 * 144.81361 * 3 2 1 7 7 C 1.37881 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99424 * 4.89196 * 7 2 1 9 9 C 1.50692 * 120.00179 * 184.89698 * 7 2 1 10 10 H 1.09000 * 109.47372 * 334.97097 * 9 7 2 11 11 O 1.45209 * 109.46994 * 94.96842 * 9 7 2 12 12 C 1.34228 * 116.99791 * 209.99701 * 11 9 7 13 13 O 1.20819 * 120.00205 * 0.02562 * 12 11 9 14 14 C 1.50700 * 119.99722 * 180.02562 * 12 11 9 15 15 C 1.53000 * 109.46986 * 180.02562 * 14 12 11 16 16 H 1.08997 * 110.34389 * 304.16058 * 15 14 12 17 17 C 1.51102 * 110.39107 * 66.45488 * 15 14 12 18 18 C 1.30518 * 111.10571 * 135.24872 * 17 15 14 19 19 C 1.51101 * 111.10609 * 359.97438 * 18 17 15 20 20 C 1.54632 * 104.72391 * 343.56356 * 19 18 17 21 21 C 1.50699 * 109.47332 * 214.96870 * 9 7 2 22 22 C 1.34511 * 125.78737 * 95.06779 * 21 9 7 23 23 C 1.41382 * 106.84316 * 179.73932 * 22 21 9 24 24 C 1.34520 * 106.83647 * 0.02562 * 23 22 21 25 25 O 1.34297 * 108.42209 * 359.97438 * 24 23 22 26 26 H 0.97006 * 120.00320 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47140 * 300.00047 * 14 12 11 28 28 H 1.08995 * 109.47276 * 59.99856 * 14 12 11 29 29 H 1.08003 * 124.44011 * 315.22536 * 17 15 14 30 30 H 1.08002 * 124.44783 * 179.97438 * 18 17 15 31 31 H 1.09000 * 110.38786 * 102.38248 * 19 18 17 32 32 H 1.09006 * 110.38674 * 224.63900 * 19 18 17 33 33 H 1.09003 * 111.03700 * 266.60085 * 20 19 18 34 34 H 1.08998 * 111.03582 * 142.66515 * 20 19 18 35 35 H 1.08005 * 126.58114 * 359.69957 * 22 21 9 36 36 H 1.07996 * 126.58076 * 179.97438 * 23 22 21 37 37 H 1.07994 * 125.78558 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.6062 1.9832 -1.3944 5 1 1.3960 2.6819 0.5875 6 1 3.4876 1.4744 0.8068 7 6 2.0045 -1.1941 -0.0005 8 1 1.4674 -2.1276 -0.0807 9 6 3.5073 -1.1965 0.1109 10 1 3.9004 -0.2480 -0.2553 11 8 3.8894 -1.3745 1.5004 12 6 5.0442 -0.8132 1.8916 13 8 5.7134 -0.1933 1.0995 14 6 5.5060 -0.9563 3.3190 15 6 6.8397 -0.2286 3.4988 16 1 7.5745 -0.6023 2.7858 17 6 6.6534 1.2614 3.3306 18 6 7.2848 1.9222 4.2623 19 6 7.9971 0.9831 5.2078 20 6 7.3546 -0.3990 4.9472 21 6 4.0704 -2.3254 -0.7135 22 6 4.5184 -2.2285 -1.9781 23 6 4.9588 -3.5175 -2.3566 24 6 4.7531 -4.3252 -1.3007 25 8 4.2150 -3.5976 -0.3084 26 1 -0.4851 0.8401 0.0004 27 1 4.7623 -0.5215 3.9868 28 1 5.6332 -2.0126 3.5555 29 1 6.0740 1.7194 2.5425 30 1 7.2966 2.9989 4.3465 31 1 9.0634 0.9548 4.9832 32 1 7.8357 1.2901 6.2412 33 1 6.5307 -0.5838 5.6365 34 1 8.0982 -1.1937 5.0068 35 1 4.5373 -1.3371 -2.5878 36 1 5.3789 -3.7998 -3.3106 37 1 4.9818 -5.3798 -1.2582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345548539.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:02 Heat of formation + Delta-G solvation = -60.992970 kcal Electronic energy + Delta-G solvation = -21369.882985 eV Core-core repulsion = 18079.212606 eV Total energy + Delta-G solvation = -3290.670379 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.82897 -39.81859 -38.34808 -35.65145 -33.15911 -32.28614 -31.59910 -30.38991 -28.89946 -27.17198 -25.59228 -22.87495 -21.18150 -20.76795 -20.19068 -19.46821 -18.56232 -17.49684 -17.05783 -16.65281 -15.92158 -15.49727 -15.44061 -15.05464 -14.76157 -14.38855 -13.59940 -12.91874 -12.84665 -12.26524 -12.23140 -12.11144 -11.93904 -11.84041 -11.79731 -11.55432 -11.36028 -11.24024 -11.12659 -11.00057 -10.67936 -10.16622 -9.78273 -9.75235 -9.56702 -9.24663 -8.96672 -8.82860 -7.72994 -6.51694 -4.60406 2.38431 2.44618 2.98715 3.07123 3.18076 3.24568 3.28413 3.61163 3.79379 4.09254 4.63577 4.65167 4.88978 4.99073 5.26008 5.31835 5.43546 5.51725 5.58224 5.62845 5.68583 5.70925 5.78285 5.88419 5.95201 6.04096 6.17275 6.24286 6.31479 6.44475 6.57297 6.66852 6.75498 6.99124 7.07264 7.14487 7.49049 7.89055 8.05845 8.59823 8.69720 9.05238 10.57093 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.006694 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.908475 B = 4181.613510 C = 5485.760680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.092 3.908 3 Si 0.869 3.131 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.507 4.507 8 H 0.089 0.911 9 C 0.253 3.747 10 H 0.080 0.920 11 O -0.354 6.354 12 C 0.447 3.553 13 O -0.526 6.526 14 C -0.112 4.112 15 C -0.058 4.058 16 H 0.090 0.910 17 C -0.137 4.137 18 C -0.188 4.188 19 C -0.096 4.096 20 C -0.121 4.121 21 C 0.033 3.967 22 C -0.230 4.230 23 C -0.210 4.210 24 C -0.073 4.073 25 O -0.169 6.169 26 H 0.276 0.724 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.701 -1.147 6.413 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.117 4.117 3 Si 0.694 3.306 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.542 4.542 8 H 0.107 0.893 9 C 0.201 3.799 10 H 0.097 0.903 11 O -0.271 6.271 12 C 0.291 3.709 13 O -0.416 6.416 14 C -0.150 4.150 15 C -0.076 4.076 16 H 0.108 0.892 17 C -0.155 4.155 18 C -0.206 4.206 19 C -0.133 4.133 20 C -0.158 4.158 21 C -0.018 4.018 22 C -0.249 4.249 23 C -0.229 4.229 24 C -0.140 4.140 25 O -0.064 6.064 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 12.591 -0.991 6.426 14.171 hybrid contribution 0.339 0.903 -0.565 1.118 sum 12.930 -0.088 5.861 14.197 Atomic orbital electron populations 1.69869 1.06389 1.28381 1.44436 1.25119 0.94934 0.99438 0.92243 0.86927 0.80785 0.82896 0.80042 1.18966 1.20189 1.18067 1.20786 0.86770 0.95917 1.50765 0.89294 1.19523 0.95343 0.89418 0.75580 0.90262 1.87105 1.36188 1.68848 1.34925 1.23654 0.80286 0.76064 0.90931 1.90558 1.55623 1.39899 1.55552 1.21475 0.97903 1.03197 0.92464 1.20908 0.95965 0.93693 0.97078 0.89193 1.23397 0.98711 0.95147 0.98197 1.23204 1.00461 0.99002 0.97967 1.21310 0.99389 0.93779 0.98866 1.22554 1.00395 0.97184 0.95711 1.23363 0.99096 0.83425 0.95962 1.21360 1.08241 0.98887 0.96422 1.21666 1.07326 0.93760 1.00132 1.23823 1.04624 0.97614 0.87980 1.84072 1.63124 1.19638 1.39592 0.91412 0.88104 0.88106 0.85636 0.86164 0.91084 0.91462 0.90679 0.90830 0.84075 0.84215 0.79004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.56 13.96 55.43 0.77 -23.79 16 2 C 0.09 2.54 5.47 -17.82 -0.10 2.45 16 3 Si 0.87 20.82 26.99 -169.99 -4.59 16.23 16 4 H -0.26 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.26 -6.21 6.82 56.52 0.39 -5.82 16 7 C -0.51 -14.25 9.23 -34.44 -0.32 -14.57 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 9 C 0.25 6.42 2.06 -29.04 -0.06 6.36 16 10 H 0.08 2.04 4.31 -51.93 -0.22 1.82 16 11 O -0.35 -8.52 9.83 -42.08 -0.41 -8.94 16 12 C 0.45 9.38 7.69 36.01 0.28 9.65 16 13 O -0.53 -11.97 13.90 -18.74 -0.26 -12.23 16 14 C -0.11 -1.73 5.23 -27.88 -0.15 -1.88 16 15 C -0.06 -0.81 2.55 -90.71 -0.23 -1.04 16 16 H 0.09 1.33 8.01 -51.93 -0.42 0.91 16 17 C -0.14 -2.05 9.19 -35.69 -0.33 -2.38 16 18 C -0.19 -2.35 10.77 -35.69 -0.38 -2.73 16 19 C -0.10 -0.99 6.81 -26.83 -0.18 -1.18 16 20 C -0.12 -1.28 6.71 -25.00 -0.17 -1.45 16 21 C 0.03 0.78 6.18 -35.63 -0.22 0.56 16 22 C -0.23 -4.90 10.81 -39.70 -0.43 -5.33 16 23 C -0.21 -3.77 10.91 -39.70 -0.43 -4.20 16 24 C -0.07 -1.29 12.09 29.42 0.36 -0.93 16 25 O -0.17 -3.73 10.63 1.95 0.02 -3.71 16 26 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 28 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.13 2.18 7.31 -52.48 -0.38 1.79 16 30 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.73 7.91 -51.93 -0.41 0.32 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.14 2.82 8.06 -52.48 -0.42 2.40 16 36 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.19 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 318.89 15.07 4.81 4.81 Total: -1.00 -31.46 318.89 -6.84 -38.30 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.81 Total: 6.00 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -2.36 Total: -16.67 kcal Atomic # 7 Polarization: -24.56 SS G_CDS: 0.77 Total: -23.79 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.65 Total: -24.88 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.59 Total: 16.23 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.46 -6.84 -38.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345548539.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.691 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds