Wall clock time and date at job start Mon Mar 30 2020 01:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99868 * 2 1 4 4 H 1.48510 * 109.47260 * 264.81043 * 3 2 1 5 5 H 1.48504 * 109.47464 * 24.81070 * 3 2 1 6 6 H 1.48505 * 109.47272 * 144.81361 * 3 2 1 7 7 C 1.37881 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99424 * 4.89196 * 7 2 1 9 9 C 1.50692 * 120.00179 * 184.89698 * 7 2 1 10 10 H 1.09000 * 109.47372 * 334.97097 * 9 7 2 11 11 O 1.45209 * 109.46994 * 94.96842 * 9 7 2 12 12 C 1.34228 * 116.99791 * 209.99701 * 11 9 7 13 13 O 1.20819 * 120.00205 * 0.02562 * 12 11 9 14 14 C 1.50700 * 119.99722 * 180.02562 * 12 11 9 15 15 C 1.53000 * 109.46986 * 180.02562 * 14 12 11 16 16 H 1.08997 * 110.34389 * 304.16058 * 15 14 12 17 17 C 1.51102 * 110.39107 * 66.45488 * 15 14 12 18 18 C 1.30518 * 111.10571 * 135.24872 * 17 15 14 19 19 C 1.51101 * 111.10609 * 359.97438 * 18 17 15 20 20 C 1.54632 * 104.72391 * 343.56356 * 19 18 17 21 21 C 1.50699 * 109.47332 * 214.96870 * 9 7 2 22 22 C 1.34511 * 125.78737 * 95.06779 * 21 9 7 23 23 C 1.41382 * 106.84316 * 179.73932 * 22 21 9 24 24 C 1.34520 * 106.83647 * 0.02562 * 23 22 21 25 25 O 1.34297 * 108.42209 * 359.97438 * 24 23 22 26 26 H 0.97006 * 120.00320 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47140 * 300.00047 * 14 12 11 28 28 H 1.08995 * 109.47276 * 59.99856 * 14 12 11 29 29 H 1.08003 * 124.44011 * 315.22536 * 17 15 14 30 30 H 1.08002 * 124.44783 * 179.97438 * 18 17 15 31 31 H 1.09000 * 110.38786 * 102.38248 * 19 18 17 32 32 H 1.09006 * 110.38674 * 224.63900 * 19 18 17 33 33 H 1.09003 * 111.03700 * 266.60085 * 20 19 18 34 34 H 1.08998 * 111.03582 * 142.66515 * 20 19 18 35 35 H 1.08005 * 126.58114 * 359.69957 * 22 21 9 36 36 H 1.07996 * 126.58076 * 179.97438 * 23 22 21 37 37 H 1.07994 * 125.78558 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.6062 1.9832 -1.3944 5 1 1.3960 2.6819 0.5875 6 1 3.4876 1.4744 0.8068 7 6 2.0045 -1.1941 -0.0005 8 1 1.4674 -2.1276 -0.0807 9 6 3.5073 -1.1965 0.1109 10 1 3.9004 -0.2480 -0.2553 11 8 3.8894 -1.3745 1.5004 12 6 5.0442 -0.8132 1.8916 13 8 5.7134 -0.1933 1.0995 14 6 5.5060 -0.9563 3.3190 15 6 6.8397 -0.2286 3.4988 16 1 7.5745 -0.6023 2.7858 17 6 6.6534 1.2614 3.3306 18 6 7.2848 1.9222 4.2623 19 6 7.9971 0.9831 5.2078 20 6 7.3546 -0.3990 4.9472 21 6 4.0704 -2.3254 -0.7135 22 6 4.5184 -2.2285 -1.9781 23 6 4.9588 -3.5175 -2.3566 24 6 4.7531 -4.3252 -1.3007 25 8 4.2150 -3.5976 -0.3084 26 1 -0.4851 0.8401 0.0004 27 1 4.7623 -0.5215 3.9868 28 1 5.6332 -2.0126 3.5555 29 1 6.0740 1.7194 2.5425 30 1 7.2966 2.9989 4.3465 31 1 9.0634 0.9548 4.9832 32 1 7.8357 1.2901 6.2412 33 1 6.5307 -0.5838 5.6365 34 1 8.0982 -1.1937 5.0068 35 1 4.5373 -1.3371 -2.5878 36 1 5.3789 -3.7998 -3.3106 37 1 4.9818 -5.3798 -1.2582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345548539.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:01 Heat of formation + Delta-G solvation = -78.974275 kcal Electronic energy + Delta-G solvation = -21370.662713 eV Core-core repulsion = 18079.212606 eV Total energy + Delta-G solvation = -3291.450107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.43377 -41.40921 -39.52824 -37.43483 -35.21333 -33.92754 -32.94727 -32.03795 -29.82141 -28.94920 -26.84954 -24.71929 -22.72025 -22.19092 -21.32780 -21.10279 -19.78445 -19.45380 -18.68821 -18.32992 -17.35975 -17.09883 -16.73367 -16.67787 -16.19186 -15.92058 -15.24682 -14.70115 -14.27373 -13.90316 -13.75543 -13.70218 -13.40702 -13.19012 -13.01246 -12.96730 -12.80894 -12.70003 -12.15008 -12.06543 -12.04262 -11.89436 -11.75403 -11.57189 -11.31908 -11.06542 -10.79937 -9.83568 -9.34732 -8.64608 -6.79352 0.84714 1.15828 1.19782 1.29297 1.33032 1.36087 1.71210 1.95423 2.07217 2.23906 2.89937 3.61330 3.68415 3.84779 3.92714 4.09240 4.14261 4.21684 4.30405 4.32705 4.52709 4.56447 4.62774 4.69325 4.90255 4.94527 4.96111 5.00216 5.04180 5.07932 5.20051 5.27308 5.40101 5.63083 5.65192 5.73041 5.93821 5.99482 6.29107 6.34023 6.89444 6.96218 8.49255 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.006694 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.908475 B = 4181.613510 C = 5485.760680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.051 3.949 3 Si 0.927 3.073 4 H -0.252 1.252 5 H -0.259 1.259 6 H -0.268 1.268 7 C -0.525 4.525 8 H 0.048 0.952 9 C 0.261 3.739 10 H 0.069 0.931 11 O -0.371 6.371 12 C 0.438 3.562 13 O -0.547 6.547 14 C -0.104 4.104 15 C -0.056 4.056 16 H 0.075 0.925 17 C -0.182 4.182 18 C -0.163 4.163 19 C -0.096 4.096 20 C -0.112 4.112 21 C -0.017 4.017 22 C -0.233 4.233 23 C -0.214 4.214 24 C -0.057 4.057 25 O -0.191 6.191 26 H 0.283 0.717 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.146 0.854 36 H 0.181 0.819 37 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.294 -1.576 7.597 17.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.155 4.155 3 Si 0.749 3.251 4 H -0.177 1.177 5 H -0.183 1.183 6 H -0.192 1.192 7 C -0.561 4.561 8 H 0.066 0.934 9 C 0.209 3.791 10 H 0.087 0.913 11 O -0.288 6.288 12 C 0.283 3.717 13 O -0.438 6.438 14 C -0.142 4.142 15 C -0.074 4.074 16 H 0.093 0.907 17 C -0.200 4.200 18 C -0.181 4.181 19 C -0.133 4.133 20 C -0.149 4.149 21 C -0.068 4.068 22 C -0.252 4.252 23 C -0.233 4.233 24 C -0.124 4.124 25 O -0.088 6.088 26 H 0.093 0.907 27 H 0.132 0.868 28 H 0.145 0.855 29 H 0.107 0.893 30 H 0.150 0.850 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.164 0.836 36 H 0.198 0.802 37 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 15.185 -1.417 7.611 17.044 hybrid contribution -0.358 0.933 -0.945 1.375 sum 14.826 -0.485 6.666 16.263 Atomic orbital electron populations 1.69946 1.07659 1.29651 1.46062 1.25793 0.95611 1.02374 0.91686 0.86028 0.79149 0.79346 0.80532 1.17659 1.18308 1.19234 1.20786 0.88553 0.94612 1.52101 0.93399 1.19110 0.93610 0.90275 0.76143 0.91301 1.86985 1.38190 1.69604 1.33981 1.24753 0.78944 0.74915 0.93064 1.90534 1.55903 1.40640 1.56772 1.21665 0.99029 1.05292 0.88195 1.20929 0.94533 0.92599 0.99328 0.90664 1.23266 1.01317 0.96306 0.99156 1.23566 0.97852 1.00042 0.96648 1.21399 0.99746 0.92751 0.99357 1.22580 1.01242 0.98147 0.92956 1.23104 1.02639 0.84096 0.96914 1.21744 1.07056 1.00841 0.95602 1.22096 1.07240 0.91922 1.02012 1.24956 1.01577 0.99339 0.86507 1.84028 1.63989 1.19333 1.41409 0.90716 0.86850 0.85476 0.89251 0.84963 0.89640 0.89160 0.89454 0.88731 0.83641 0.80183 0.73755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.46 13.96 21.45 0.30 -53.16 16 2 C 0.05 2.93 5.47 84.66 0.46 3.39 16 3 Si 0.93 44.46 26.99 68.60 1.85 46.31 16 4 H -0.25 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 6 H -0.27 -13.19 6.82 99.48 0.68 -12.51 16 7 C -0.52 -31.21 9.23 25.60 0.24 -30.97 16 8 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 9 C 0.26 13.85 2.06 29.10 0.06 13.91 16 10 H 0.07 3.72 4.31 -2.39 -0.01 3.71 16 11 O -0.37 -18.53 9.83 -48.70 -0.48 -19.00 16 12 C 0.44 18.80 7.69 71.24 0.55 19.34 16 13 O -0.55 -25.76 13.90 21.98 0.31 -25.45 16 14 C -0.10 -3.13 5.23 29.85 0.16 -2.97 16 15 C -0.06 -1.48 2.55 -10.85 -0.03 -1.51 16 16 H 0.08 2.18 8.01 -2.39 -0.02 2.16 16 17 C -0.18 -5.42 9.19 26.27 0.24 -5.18 16 18 C -0.16 -3.73 10.77 26.27 0.28 -3.45 16 19 C -0.10 -1.60 6.81 30.53 0.21 -1.40 16 20 C -0.11 -1.97 6.71 31.71 0.21 -1.76 16 21 C -0.02 -0.82 6.18 24.83 0.15 -0.67 16 22 C -0.23 -9.96 10.81 22.19 0.24 -9.72 16 23 C -0.21 -7.20 10.91 22.19 0.24 -6.95 16 24 C -0.06 -1.89 12.09 66.97 0.81 -1.08 16 25 O -0.19 -8.48 10.63 1.19 0.01 -8.47 16 26 H 0.28 15.37 8.31 -92.70 -0.77 14.60 16 27 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 28 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 29 H 0.09 3.27 7.31 -2.91 -0.02 3.25 16 30 H 0.13 2.63 8.06 -2.91 -0.02 2.60 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.09 1.35 7.91 -2.39 -0.02 1.33 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.15 5.88 8.06 -2.91 -0.02 5.86 16 36 H 0.18 4.47 8.06 -2.91 -0.02 4.44 16 37 H 0.25 5.05 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -73.78 318.89 6.85 -66.93 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 1.04 Total: 21.87 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 3.83 Total: -29.02 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.30 Total: -53.16 kcal Atomic # 8 Polarization: -52.76 SS G_CDS: -0.16 Total: -52.92 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.85 Total: 46.31 kcal Total: -73.78 6.85 -66.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345548539.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.048 kcal (2) G-P(sol) polarization free energy of solvation -73.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds