Wall clock time and date at job start Mon Mar 30 2020 01:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99815 * 2 1 4 4 H 1.48498 * 109.47233 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47339 * 300.00045 * 3 2 1 6 6 H 1.48500 * 109.47090 * 60.00198 * 3 2 1 7 7 C 1.37876 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99718 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00102 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47402 * 300.00421 * 9 7 2 11 11 O 1.45199 * 109.47030 * 180.02562 * 9 7 2 12 12 C 1.34237 * 117.00140 * 150.00512 * 11 9 7 13 13 O 1.20828 * 119.99383 * 359.97438 * 12 11 9 14 14 C 1.50692 * 120.00133 * 179.97438 * 12 11 9 15 15 C 1.52999 * 109.47133 * 179.97438 * 14 12 11 16 16 H 1.08992 * 110.43892 * 55.89447 * 15 14 12 17 17 C 1.51102 * 110.38397 * 293.54438 * 15 14 12 18 18 C 1.30534 * 111.10436 * 224.75096 * 17 15 14 19 19 C 1.51096 * 111.10422 * 0.02562 * 18 17 15 20 20 C 1.54632 * 104.72709 * 16.43231 * 19 18 17 21 21 C 1.50706 * 109.47046 * 60.00664 * 9 7 2 22 22 C 1.34509 * 125.78786 * 264.71318 * 21 9 7 23 23 C 1.41376 * 106.83955 * 179.88722 * 22 21 9 24 24 C 1.34512 * 106.84208 * 0.37636 * 23 22 21 25 25 O 1.34297 * 108.41898 * 359.76695 * 24 23 22 26 26 H 0.96995 * 120.00064 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47092 * 59.99878 * 14 12 11 28 28 H 1.09006 * 109.47405 * 300.00000 * 14 12 11 29 29 H 1.07997 * 124.44898 * 45.01706 * 17 15 14 30 30 H 1.07996 * 124.44535 * 180.02562 * 18 17 15 31 31 H 1.08994 * 110.38987 * 135.24587 * 19 18 17 32 32 H 1.08998 * 110.38665 * 257.62693 * 19 18 17 33 33 H 1.09007 * 111.03840 * 93.39790 * 20 19 18 34 34 H 1.09002 * 111.03991 * 217.29667 * 20 19 18 35 35 H 1.08000 * 126.57873 * 0.02929 * 22 21 9 36 36 H 1.08005 * 126.58074 * 180.12532 * 23 22 21 37 37 H 1.08002 * 125.78925 * 179.75187 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 2.1947 -3.6027 -0.0005 12 6 1.8034 -4.7391 0.5974 13 8 0.7089 -4.8090 1.1044 14 6 2.7292 -5.9274 0.6363 15 6 2.0457 -7.0827 1.3705 16 1 1.0901 -7.3187 0.9025 17 6 1.8467 -6.7360 2.8277 18 6 2.1816 -7.7348 3.5984 19 6 2.6603 -8.9139 2.7838 20 6 2.9618 -8.3286 1.3846 21 6 0.3843 -2.5788 -1.2308 22 6 -0.9157 -2.2404 -1.3004 23 6 -1.3274 -2.4684 -2.6335 24 6 -0.2566 -2.9404 -3.2968 25 8 0.7773 -3.0050 -2.4422 26 1 -0.4850 0.8400 0.0004 27 1 3.6462 -5.6567 1.1597 28 1 2.9692 -6.2347 -0.3817 29 1 1.4723 -5.7879 3.1844 30 1 2.1241 -7.7203 4.6767 31 1 3.5648 -9.3359 3.2217 32 1 1.8798 -9.6719 2.7181 33 1 4.0105 -8.0445 1.2970 34 1 2.6816 -9.0297 0.5985 35 1 -1.5269 -1.8644 -0.4933 36 1 -2.3137 -2.3002 -3.0402 37 1 -0.2325 -3.2201 -4.3397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345548552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:03 Heat of formation + Delta-G solvation = -76.177833 kcal Electronic energy + Delta-G solvation = -21276.023603 eV Core-core repulsion = 17984.694759 eV Total energy + Delta-G solvation = -3291.328844 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.18675 -41.40032 -39.49941 -37.43577 -35.32107 -33.53750 -32.80754 -31.43728 -29.78822 -28.64473 -26.84766 -24.85503 -22.52620 -22.10920 -21.31109 -21.04620 -19.69861 -18.96980 -18.48210 -18.18840 -17.19962 -16.98267 -16.71926 -16.48559 -16.29864 -15.80936 -14.94483 -14.58064 -14.15854 -13.71490 -13.53471 -13.47883 -13.20592 -13.01048 -12.94042 -12.82102 -12.78524 -12.67492 -12.22529 -12.11666 -12.02977 -11.98249 -11.73251 -11.38377 -11.23149 -10.83273 -10.52099 -9.80201 -9.12208 -8.24509 -6.54752 1.09838 1.32825 1.37593 1.39007 1.40241 1.52962 1.91134 2.11791 2.38772 2.42462 2.99632 3.63147 3.71217 3.94413 3.98054 4.22161 4.33543 4.39472 4.45236 4.56171 4.60209 4.65513 4.69916 4.72943 4.97202 4.99408 5.10257 5.15373 5.29892 5.34489 5.41364 5.43525 5.46906 5.66475 5.69043 5.84882 5.97585 5.98022 6.47041 6.58767 6.95194 7.18230 8.71267 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019830 B = 0.005094 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.680902 B = 5494.874605 C = 6323.477680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.024 3.976 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.301 3.699 10 H 0.039 0.961 11 O -0.362 6.362 12 C 0.442 3.558 13 O -0.546 6.546 14 C -0.096 4.096 15 C -0.057 4.057 16 H 0.071 0.929 17 C -0.180 4.180 18 C -0.164 4.164 19 C -0.097 4.097 20 C -0.112 4.112 21 C -0.008 4.008 22 C -0.191 4.191 23 C -0.229 4.229 24 C -0.070 4.070 25 O -0.195 6.195 26 H 0.270 0.730 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.092 0.908 30 H 0.133 0.867 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.165 0.835 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.093 -13.965 -0.343 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.593 4.593 8 H 0.092 0.908 9 C 0.247 3.753 10 H 0.056 0.944 11 O -0.278 6.278 12 C 0.287 3.713 13 O -0.436 6.436 14 C -0.133 4.133 15 C -0.076 4.076 16 H 0.089 0.911 17 C -0.198 4.198 18 C -0.182 4.182 19 C -0.133 4.133 20 C -0.149 4.149 21 C -0.058 4.058 22 C -0.211 4.211 23 C -0.248 4.248 24 C -0.136 4.136 25 O -0.093 6.093 26 H 0.080 0.920 27 H 0.140 0.860 28 H 0.145 0.855 29 H 0.110 0.890 30 H 0.151 0.849 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.142 0.858 36 H 0.183 0.817 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.885 -13.934 -0.266 14.768 hybrid contribution -0.751 1.643 0.251 1.824 sum 4.134 -12.291 -0.015 12.967 Atomic orbital electron populations 1.70174 1.07247 1.28380 1.46791 1.25842 0.96043 1.02842 0.93215 0.85152 0.78929 0.77403 0.78070 1.18545 1.20198 1.19577 1.21201 0.94154 0.88832 1.55100 0.90805 1.18708 0.85622 0.82881 0.88050 0.94367 1.86538 1.48021 1.22797 1.70455 1.24813 0.87541 0.85258 0.73638 1.90585 1.24591 1.83702 1.44745 1.21607 0.97707 0.88565 1.05422 1.20933 0.99214 0.94182 0.93233 0.91125 1.23268 1.01633 0.99097 0.95838 1.23559 0.99425 0.95453 0.99721 1.21402 1.01936 0.96148 0.93860 1.22578 0.99763 0.94580 0.97950 1.23362 0.94751 1.01865 0.85863 1.21346 0.95030 1.06255 0.98486 1.22062 1.01421 1.07465 0.93892 1.24691 0.85111 1.06716 0.97124 1.83954 1.39119 1.67119 1.19069 0.92030 0.86044 0.85463 0.88968 0.84937 0.89083 0.89891 0.89120 0.88949 0.85805 0.81736 0.74263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.94 10.50 21.45 0.23 -50.72 16 2 C 0.02 1.31 5.30 84.65 0.45 1.76 16 3 Si 0.98 43.34 29.54 68.60 2.03 45.36 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.56 -32.07 8.89 25.60 0.23 -31.84 16 8 H 0.07 4.17 7.81 -2.91 -0.02 4.15 16 9 C 0.30 17.01 2.41 29.10 0.07 17.08 16 10 H 0.04 2.40 7.15 -2.38 -0.02 2.38 16 11 O -0.36 -17.98 9.84 -48.82 -0.48 -18.46 16 12 C 0.44 18.92 7.69 71.23 0.55 19.47 16 13 O -0.55 -26.63 13.90 21.96 0.31 -26.33 16 14 C -0.10 -2.73 5.23 29.85 0.16 -2.57 16 15 C -0.06 -1.49 2.54 -10.85 -0.03 -1.52 16 16 H 0.07 2.08 8.01 -2.39 -0.02 2.07 16 17 C -0.18 -5.21 9.20 26.25 0.24 -4.96 16 18 C -0.16 -3.63 10.78 26.25 0.28 -3.35 16 19 C -0.10 -1.58 6.81 30.53 0.21 -1.37 16 20 C -0.11 -1.88 6.71 31.71 0.21 -1.67 16 21 C -0.01 -0.43 5.67 24.83 0.14 -0.29 16 22 C -0.19 -9.98 9.05 22.19 0.20 -9.78 16 23 C -0.23 -9.66 10.91 22.19 0.24 -9.42 16 24 C -0.07 -2.75 12.09 66.97 0.81 -1.94 16 25 O -0.20 -9.62 10.63 1.07 0.01 -9.61 16 26 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 28 H 0.13 2.96 8.14 -2.38 -0.02 2.94 16 29 H 0.09 3.27 7.31 -2.91 -0.02 3.25 16 30 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.28 7.91 -2.38 -0.02 1.26 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.12 6.85 7.51 -2.91 -0.02 6.83 16 36 H 0.17 5.63 8.06 -2.91 -0.02 5.60 16 37 H 0.24 6.33 8.06 -2.91 -0.02 6.30 16 Total: -1.00 -71.95 317.90 6.91 -65.04 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 1.06 Total: 25.13 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 3.76 Total: -30.41 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.23 Total: -50.72 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -0.16 Total: -54.40 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -71.95 6.91 -65.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345548552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.137 kcal (2) G-P(sol) polarization free energy of solvation -71.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds