Wall clock time and date at job start Mon Mar 30 2020 02:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35761 * 120.00011 * 2 1 4 4 C 1.41292 * 120.00058 * 180.02562 * 3 2 1 5 5 O 1.21704 * 119.99934 * 359.97438 * 4 3 2 6 6 O 1.35001 * 119.99705 * 179.97438 * 4 3 2 7 7 C 1.42903 * 116.99901 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.46758 * 330.00329 * 7 6 4 9 9 C 1.50702 * 109.47075 * 210.00162 * 7 6 4 10 10 H 1.08003 * 119.99700 * 0.02562 * 9 7 6 11 11 C 1.37873 * 119.99831 * 179.97438 * 9 7 6 12 12 N 1.31514 * 120.00337 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99905 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47013 * 90.00218 * 13 11 9 15 15 H 1.48509 * 109.46945 * 210.00304 * 13 11 9 16 16 H 1.48497 * 109.47052 * 330.00019 * 13 11 9 17 17 C 1.52996 * 109.46931 * 90.00157 * 7 6 4 18 18 C 1.53002 * 117.49888 * 231.25412 * 17 7 6 19 19 C 1.53000 * 117.50107 * 299.91174 * 17 7 6 20 20 C 1.41530 * 120.00547 * 180.02562 * 2 1 3 21 21 C 1.38003 * 126.10587 * 295.00334 * 20 2 1 22 22 C 1.40280 * 106.52717 * 179.97438 * 21 20 2 23 23 C 1.35177 * 107.20860 * 359.97438 * 22 21 20 24 24 O 1.34004 * 109.04463 * 359.75451 * 23 22 21 25 25 H 1.09000 * 109.47288 * 90.00045 * 1 2 3 26 26 H 1.08999 * 109.46524 * 210.00003 * 1 2 3 27 27 H 1.09000 * 109.47155 * 329.99830 * 1 2 3 28 28 H 1.07998 * 119.99834 * 359.97438 * 3 2 1 29 29 H 0.96991 * 120.00328 * 179.97438 * 12 11 9 30 30 H 1.09002 * 115.54951 * 85.58385 * 17 7 6 31 31 H 1.09000 * 117.49996 * 215.00804 * 18 17 7 32 32 H 1.08999 * 117.49664 * 0.02562 * 18 17 7 33 33 H 1.09008 * 117.49673 * 359.97438 * 19 17 7 34 34 H 1.08999 * 117.49959 * 144.99502 * 19 17 7 35 35 H 1.08004 * 126.73580 * 359.95067 * 21 20 2 36 36 H 1.07995 * 126.39378 * 179.97438 * 22 21 20 37 37 H 1.08001 * 125.48112 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.1757 0.0000 4 6 3.5987 1.1757 -0.0005 5 8 4.2072 0.1217 -0.0005 6 8 4.2736 2.3449 -0.0011 7 6 5.7007 2.2702 -0.0010 8 1 6.0169 1.3626 0.5131 9 6 6.2667 3.4730 0.7089 10 1 5.6029 4.2196 1.1194 11 6 7.6317 3.6198 0.8352 12 7 8.4400 2.7104 0.3358 13 14 8.3333 5.1104 1.7158 14 1 8.4822 4.8064 3.1617 15 1 9.6611 5.4453 1.1411 16 1 7.4145 6.2643 1.5446 17 6 6.2099 2.2429 -1.4435 18 6 7.1895 1.1315 -1.8260 19 6 5.7464 1.0889 -2.3347 20 6 2.2147 -1.2256 -0.0005 21 6 2.2133 -2.1660 1.0095 22 6 3.0459 -3.2113 0.5828 23 6 3.5115 -2.8772 -0.6415 24 8 3.0061 -1.6866 -0.9917 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6458 2.1110 -0.0004 29 1 9.4003 2.8138 0.4244 30 1 6.3464 3.2174 -1.9124 31 1 7.9704 1.3749 -2.5464 32 1 7.4707 0.4196 -1.0500 33 1 5.0789 0.3487 -1.8931 34 1 5.5778 1.3041 -3.3898 35 1 1.6768 -2.1083 1.9451 36 1 3.2724 -4.1142 1.1301 37 1 4.1798 -3.4758 -1.2428 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345977838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:06 Heat of formation + Delta-G solvation = -24.534270 kcal Electronic energy + Delta-G solvation = -21727.472173 eV Core-core repulsion = 18438.382762 eV Total energy + Delta-G solvation = -3289.089411 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.16856 -39.73135 -36.83717 -35.24526 -34.64335 -32.59859 -32.57348 -29.10260 -28.47889 -27.41516 -23.64688 -22.66849 -21.35799 -21.20639 -20.96703 -19.26668 -18.91329 -17.54925 -16.63803 -16.38231 -15.67472 -15.40192 -15.17318 -14.60646 -14.01442 -13.79230 -13.45830 -13.27784 -12.92475 -12.62201 -12.58805 -12.35529 -12.26983 -11.88293 -11.44961 -11.32623 -11.02920 -10.87713 -10.38446 -10.24397 -9.77332 -9.75871 -9.60925 -9.29551 -9.25759 -8.95542 -8.56478 -8.37663 -7.86663 -6.10345 -4.18125 0.86864 2.10512 2.87748 3.27534 3.33217 3.36530 3.39080 3.68856 3.85699 4.39321 4.83180 5.01278 5.16336 5.22571 5.25063 5.29616 5.31803 5.41588 5.64431 5.79196 5.94773 6.01058 6.04873 6.17889 6.20496 6.29423 6.43614 6.53149 6.64694 6.74947 6.78904 7.06584 7.24312 7.34559 7.41426 7.46773 7.68749 7.91485 8.18039 8.70262 8.96606 9.46549 10.96422 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023397 B = 0.005294 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.462944 B = 5288.001864 C = 5689.717500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.018 3.982 3 C -0.160 4.160 4 C 0.476 3.524 5 O -0.498 6.498 6 O -0.342 6.342 7 C 0.246 3.754 8 H 0.046 0.954 9 C -0.527 4.527 10 H 0.068 0.932 11 C 0.069 3.931 12 N -0.873 5.873 13 Si 0.905 3.095 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.272 1.272 17 C -0.114 4.114 18 C -0.124 4.124 19 C -0.228 4.228 20 C 0.030 3.970 21 C -0.194 4.194 22 C -0.218 4.218 23 C -0.027 4.027 24 O -0.141 6.141 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.146 0.854 29 H 0.263 0.737 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.352 -7.950 -1.833 15.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.017 3.983 3 C -0.179 4.179 4 C 0.322 3.678 5 O -0.391 6.391 6 O -0.258 6.258 7 C 0.193 3.807 8 H 0.063 0.937 9 C -0.564 4.564 10 H 0.086 0.914 11 C -0.135 4.135 12 N -0.509 5.509 13 Si 0.732 3.268 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.197 1.197 17 C -0.133 4.133 18 C -0.161 4.161 19 C -0.265 4.265 20 C -0.021 4.021 21 C -0.213 4.213 22 C -0.237 4.237 23 C -0.097 4.097 24 O -0.035 6.035 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.163 0.837 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -12.861 -8.103 -2.131 15.350 hybrid contribution 0.928 0.651 0.567 1.268 sum -11.933 -7.452 -1.565 14.155 Atomic orbital electron populations 1.20922 0.88761 1.03862 1.03377 1.19250 0.95504 0.88998 0.94596 1.21706 0.92760 0.98911 1.04560 1.19781 0.89594 0.83616 0.74768 1.90826 1.70528 1.32379 1.45323 1.86212 1.25970 1.31789 1.81849 1.19752 0.70316 0.99317 0.91342 0.93665 1.20928 0.91633 1.06947 1.36934 0.91415 1.24879 0.96463 0.96838 0.95361 1.70051 1.03454 1.33690 1.43708 0.86386 0.78310 0.82486 0.79596 1.20514 1.21063 1.19663 1.22614 1.02274 0.92361 0.96080 1.22335 0.90210 1.02127 1.01432 1.23290 1.00196 1.04719 0.98333 1.19317 0.96740 0.95677 0.90371 1.21904 1.05074 0.94295 1.00043 1.21513 1.03490 1.01584 0.97121 1.23993 1.01323 0.86311 0.98026 1.84168 1.48277 1.30672 1.40367 0.89802 0.90568 0.90107 0.83651 0.92723 0.89538 0.90980 0.89481 0.88585 0.91282 0.83874 0.83902 0.78716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.02 36.00 0.36 -0.65 16 2 C 0.02 0.25 5.79 -104.26 -0.60 -0.36 16 3 C -0.16 -2.58 9.63 -39.31 -0.38 -2.96 16 4 C 0.48 10.22 6.83 31.89 0.22 10.44 16 5 O -0.50 -11.61 9.88 -27.20 -0.27 -11.88 16 6 O -0.34 -8.35 9.72 -41.32 -0.40 -8.75 16 7 C 0.25 6.65 2.21 -27.88 -0.06 6.59 16 8 H 0.05 1.36 6.87 -51.93 -0.36 1.01 16 9 C -0.53 -14.94 8.86 -34.44 -0.31 -15.24 16 10 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 11 C 0.07 1.90 5.30 -17.82 -0.09 1.80 16 12 N -0.87 -24.70 11.43 55.43 0.63 -24.07 16 13 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 C -0.11 -2.89 4.47 -90.62 -0.40 -3.30 16 18 C -0.12 -2.96 9.04 -26.69 -0.24 -3.20 16 19 C -0.23 -5.14 9.79 -26.70 -0.26 -5.40 16 20 C 0.03 0.48 4.36 -38.41 -0.17 0.31 16 21 C -0.19 -2.86 10.90 -38.90 -0.42 -3.29 16 22 C -0.22 -3.07 10.87 -39.90 -0.43 -3.50 16 23 C -0.03 -0.40 12.06 29.64 0.36 -0.04 16 24 O -0.14 -2.47 8.94 -18.63 -0.17 -2.64 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 27 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 28 H 0.15 1.89 8.06 -52.49 -0.42 1.46 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 30 H 0.09 2.25 8.11 -51.93 -0.42 1.83 16 31 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 32 H 0.09 2.22 8.05 -51.93 -0.42 1.81 16 33 H 0.10 2.25 5.33 -51.92 -0.28 1.97 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.14 1.78 8.06 -52.48 -0.42 1.35 16 36 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 37 H 0.20 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 318.26 15.07 4.80 4.80 Total: -1.00 -32.26 318.26 -7.68 -39.94 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.82 Total: 5.16 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -2.44 Total: -18.80 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.63 Total: -24.07 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.84 Total: -23.27 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.26 -7.68 -39.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345977838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.409 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds