Wall clock time and date at job start Mon Mar 30 2020 02:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35761 * 120.00011 * 2 1 4 4 C 1.41292 * 120.00058 * 180.02562 * 3 2 1 5 5 O 1.21704 * 119.99934 * 359.97438 * 4 3 2 6 6 O 1.35001 * 119.99705 * 179.97438 * 4 3 2 7 7 C 1.42903 * 116.99901 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.46758 * 330.00329 * 7 6 4 9 9 C 1.50702 * 109.47075 * 210.00162 * 7 6 4 10 10 H 1.08003 * 119.99700 * 0.02562 * 9 7 6 11 11 C 1.37873 * 119.99831 * 179.97438 * 9 7 6 12 12 N 1.31514 * 120.00337 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99905 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47013 * 90.00218 * 13 11 9 15 15 H 1.48509 * 109.46945 * 210.00304 * 13 11 9 16 16 H 1.48497 * 109.47052 * 330.00019 * 13 11 9 17 17 C 1.52996 * 109.46931 * 90.00157 * 7 6 4 18 18 C 1.53002 * 117.49888 * 231.25412 * 17 7 6 19 19 C 1.53000 * 117.50107 * 299.91174 * 17 7 6 20 20 C 1.41530 * 120.00547 * 180.02562 * 2 1 3 21 21 C 1.38003 * 126.10587 * 295.00334 * 20 2 1 22 22 C 1.40280 * 106.52717 * 179.97438 * 21 20 2 23 23 C 1.35177 * 107.20860 * 359.97438 * 22 21 20 24 24 O 1.34004 * 109.04463 * 359.75451 * 23 22 21 25 25 H 1.09000 * 109.47288 * 90.00045 * 1 2 3 26 26 H 1.08999 * 109.46524 * 210.00003 * 1 2 3 27 27 H 1.09000 * 109.47155 * 329.99830 * 1 2 3 28 28 H 1.07998 * 119.99834 * 359.97438 * 3 2 1 29 29 H 0.96991 * 120.00328 * 179.97438 * 12 11 9 30 30 H 1.09002 * 115.54951 * 85.58385 * 17 7 6 31 31 H 1.09000 * 117.49996 * 215.00804 * 18 17 7 32 32 H 1.08999 * 117.49664 * 0.02562 * 18 17 7 33 33 H 1.09008 * 117.49673 * 359.97438 * 19 17 7 34 34 H 1.08999 * 117.49959 * 144.99502 * 19 17 7 35 35 H 1.08004 * 126.73580 * 359.95067 * 21 20 2 36 36 H 1.07995 * 126.39378 * 179.97438 * 22 21 20 37 37 H 1.08001 * 125.48112 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.1757 0.0000 4 6 3.5987 1.1757 -0.0005 5 8 4.2072 0.1217 -0.0005 6 8 4.2736 2.3449 -0.0011 7 6 5.7007 2.2702 -0.0010 8 1 6.0169 1.3626 0.5131 9 6 6.2667 3.4730 0.7089 10 1 5.6029 4.2196 1.1194 11 6 7.6317 3.6198 0.8352 12 7 8.4400 2.7104 0.3358 13 14 8.3333 5.1104 1.7158 14 1 8.4822 4.8064 3.1617 15 1 9.6611 5.4453 1.1411 16 1 7.4145 6.2643 1.5446 17 6 6.2099 2.2429 -1.4435 18 6 7.1895 1.1315 -1.8260 19 6 5.7464 1.0889 -2.3347 20 6 2.2147 -1.2256 -0.0005 21 6 2.2133 -2.1660 1.0095 22 6 3.0459 -3.2113 0.5828 23 6 3.5115 -2.8772 -0.6415 24 8 3.0061 -1.6866 -0.9917 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6458 2.1110 -0.0004 29 1 9.4003 2.8138 0.4244 30 1 6.3464 3.2174 -1.9124 31 1 7.9704 1.3749 -2.5464 32 1 7.4707 0.4196 -1.0500 33 1 5.0789 0.3487 -1.8931 34 1 5.5778 1.3041 -3.3898 35 1 1.6768 -2.1083 1.9451 36 1 3.2724 -4.1142 1.1301 37 1 4.1798 -3.4758 -1.2428 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345977838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:06 Heat of formation + Delta-G solvation = -41.707325 kcal Electronic energy + Delta-G solvation = -21728.216853 eV Core-core repulsion = 18438.382762 eV Total energy + Delta-G solvation = -3289.834091 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.35273 -41.43829 -38.55815 -36.89171 -36.14711 -34.70974 -33.74437 -30.61099 -29.60392 -29.03857 -25.46877 -24.10618 -23.09507 -22.53365 -22.45110 -21.18755 -20.20755 -19.19952 -18.45512 -17.94714 -17.07216 -17.01369 -16.74604 -16.43534 -15.75510 -15.16083 -14.84044 -14.50082 -14.27482 -13.99096 -13.74722 -13.67078 -13.36198 -13.27827 -13.21793 -12.96363 -12.79227 -12.75492 -12.29803 -12.17023 -11.78594 -11.45084 -11.22440 -10.93869 -10.76884 -10.58291 -10.45909 -10.40943 -9.05657 -8.21633 -6.38975 -0.37620 0.91977 1.40976 1.42394 1.53660 1.74822 2.03217 2.19237 2.41253 2.50790 3.05498 3.24874 3.77577 3.97261 4.09761 4.15375 4.22829 4.29803 4.33097 4.43166 4.48697 4.64110 4.77493 4.79706 4.84248 4.95201 5.01165 5.09287 5.10643 5.25818 5.26943 5.38290 5.42247 5.48724 5.57211 5.69031 5.87515 6.18454 6.25365 6.65111 7.07223 7.32262 8.84752 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023397 B = 0.005294 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.462944 B = 5288.001864 C = 5689.717500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.054 3.946 3 C -0.200 4.200 4 C 0.468 3.532 5 O -0.527 6.527 6 O -0.357 6.357 7 C 0.255 3.745 8 H 0.001 0.999 9 C -0.557 4.557 10 H 0.062 0.938 11 C 0.024 3.976 12 N -0.896 5.896 13 Si 0.975 3.025 14 H -0.274 1.274 15 H -0.276 1.276 16 H -0.265 1.265 17 C -0.131 4.131 18 C -0.121 4.121 19 C -0.198 4.198 20 C -0.006 4.006 21 C -0.197 4.197 22 C -0.224 4.224 23 C -0.042 4.042 24 O -0.168 6.168 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.175 0.825 29 H 0.266 0.734 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.166 0.834 36 H 0.169 0.831 37 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.823 -7.957 -1.836 16.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.053 3.947 3 C -0.219 4.219 4 C 0.317 3.683 5 O -0.421 6.421 6 O -0.274 6.274 7 C 0.201 3.799 8 H 0.019 0.981 9 C -0.595 4.595 10 H 0.080 0.920 11 C -0.178 4.178 12 N -0.532 5.532 13 Si 0.798 3.202 14 H -0.200 1.200 15 H -0.201 1.201 16 H -0.189 1.189 17 C -0.150 4.150 18 C -0.158 4.158 19 C -0.235 4.235 20 C -0.056 4.056 21 C -0.216 4.216 22 C -0.243 4.243 23 C -0.111 4.111 24 O -0.063 6.063 25 H 0.123 0.877 26 H 0.110 0.890 27 H 0.124 0.876 28 H 0.192 0.808 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.183 0.817 36 H 0.187 0.813 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -14.359 -8.123 -2.135 16.635 hybrid contribution 1.323 0.450 0.593 1.518 sum -13.036 -7.673 -1.542 15.205 Atomic orbital electron populations 1.21128 0.84560 1.05863 1.05109 1.19935 0.97971 0.87328 0.89459 1.21730 0.89728 1.01201 1.09198 1.20687 0.91447 0.82346 0.73775 1.90802 1.71502 1.32804 1.46974 1.86189 1.24615 1.33774 1.82787 1.19331 0.71943 0.96796 0.91784 0.98094 1.21218 0.92466 1.07528 1.38248 0.91973 1.25740 0.96467 0.99765 0.95781 1.70168 1.03733 1.35156 1.44113 0.85316 0.77698 0.78802 0.78360 1.19957 1.20110 1.18938 1.22434 1.04114 0.92631 0.95842 1.22234 0.91378 1.00997 1.01179 1.23241 0.98641 1.02377 0.99241 1.19931 0.97595 0.97000 0.91089 1.22324 1.04896 0.93914 1.00433 1.21928 1.02977 1.02377 0.97027 1.24700 1.01469 0.85929 0.98998 1.84142 1.48971 1.31831 1.41360 0.87739 0.89009 0.87644 0.80757 0.92447 0.90474 0.89400 0.91928 0.89546 0.88276 0.81686 0.81323 0.76176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.02 71.23 0.71 -0.87 16 2 C 0.05 1.43 5.79 -19.63 -0.11 1.32 16 3 C -0.20 -6.35 9.63 22.45 0.22 -6.13 16 4 C 0.47 20.74 6.83 68.57 0.47 21.20 16 5 O -0.53 -25.54 9.88 26.61 0.26 -25.28 16 6 O -0.36 -18.13 9.72 -59.20 -0.58 -18.71 16 7 C 0.26 14.43 2.21 29.85 0.07 14.50 16 8 H 0.00 0.09 6.87 -2.39 -0.02 0.07 16 9 C -0.56 -32.64 8.86 25.60 0.23 -32.42 16 10 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 11 C 0.02 1.37 5.30 84.65 0.45 1.82 16 12 N -0.90 -51.73 11.43 21.45 0.25 -51.49 16 13 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 C -0.13 -6.83 4.47 -10.79 -0.05 -6.88 16 18 C -0.12 -5.88 9.04 30.62 0.28 -5.60 16 19 C -0.20 -8.95 9.79 30.62 0.30 -8.65 16 20 C -0.01 -0.19 4.36 23.03 0.10 -0.09 16 21 C -0.20 -5.54 10.90 22.71 0.25 -5.30 16 22 C -0.22 -6.04 10.87 22.06 0.24 -5.81 16 23 C -0.04 -1.23 12.06 67.11 0.81 -0.42 16 24 O -0.17 -5.90 8.94 16.18 0.14 -5.76 16 25 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.09 1.09 8.10 -2.39 -0.02 1.07 16 27 H 0.10 1.06 8.08 -2.39 -0.02 1.04 16 28 H 0.18 4.30 8.06 -2.91 -0.02 4.28 16 29 H 0.27 14.48 8.31 -92.72 -0.77 13.71 16 30 H 0.08 4.12 8.11 -2.39 -0.02 4.10 16 31 H 0.09 3.94 8.14 -2.39 -0.02 3.93 16 32 H 0.06 3.34 8.05 -2.39 -0.02 3.32 16 33 H 0.09 4.13 5.33 -2.38 -0.01 4.11 16 34 H 0.10 3.86 8.14 -2.39 -0.02 3.85 16 35 H 0.17 3.74 8.06 -2.91 -0.02 3.72 16 36 H 0.17 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.22 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -73.06 318.26 7.12 -65.93 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 1.07 Total: 22.74 kcal Atomic # 6 Polarization: -37.28 SS G_CDS: 3.95 Total: -33.33 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.25 Total: -51.49 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -0.17 Total: -49.75 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -73.06 7.12 -65.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345977838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.224 kcal (2) G-P(sol) polarization free energy of solvation -73.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds