Wall clock time and date at job start Mon Mar 30 2020 02:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35752 * 120.00329 * 2 1 4 4 C 1.41300 * 119.99703 * 7.23980 * 3 2 1 5 5 O 1.21709 * 119.99830 * 6.05373 * 4 3 2 6 6 O 1.34997 * 120.00048 * 186.05595 * 4 3 2 7 7 C 1.42892 * 117.00235 * 179.97438 * 6 4 3 8 8 H 1.09008 * 109.47142 * 29.99825 * 7 6 4 9 9 C 1.50694 * 109.47350 * 149.99907 * 7 6 4 10 10 H 1.08000 * 120.00050 * 0.02562 * 9 7 6 11 11 C 1.37882 * 120.00193 * 179.97438 * 9 7 6 12 12 N 1.31509 * 119.99720 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00048 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47093 * 60.00066 * 13 11 9 15 15 H 1.48497 * 109.47076 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47335 * 300.00124 * 13 11 9 17 17 C 1.52998 * 109.47279 * 270.00224 * 7 6 4 18 18 C 1.52999 * 117.50372 * 128.74469 * 17 7 6 19 19 C 1.53005 * 117.50004 * 60.08364 * 17 7 6 20 20 C 1.41539 * 120.00045 * 179.97438 * 2 1 3 21 21 C 1.37998 * 126.10475 * 295.00619 * 20 2 1 22 22 C 1.40286 * 106.52255 * 180.02562 * 21 20 2 23 23 C 1.35180 * 107.21307 * 359.97438 * 22 21 20 24 24 O 1.34008 * 109.03763 * 0.02562 * 23 22 21 25 25 H 1.08990 * 109.47287 * 275.53531 * 1 2 3 26 26 H 1.08999 * 109.46932 * 35.53494 * 1 2 3 27 27 H 1.09005 * 109.47209 * 155.52876 * 1 2 3 28 28 H 1.07999 * 120.00133 * 187.24048 * 3 2 1 29 29 H 0.97008 * 119.99742 * 179.97438 * 12 11 9 30 30 H 1.09005 * 115.54863 * 274.41140 * 17 7 6 31 31 H 1.09000 * 117.49679 * 359.97438 * 18 17 7 32 32 H 1.08996 * 117.50210 * 145.01893 * 18 17 7 33 33 H 1.09001 * 117.49671 * 214.98006 * 19 17 7 34 34 H 1.08996 * 117.49800 * 359.97438 * 19 17 7 35 35 H 1.08002 * 126.73658 * 0.04927 * 21 20 2 36 36 H 1.07995 * 126.39530 * 179.97438 * 22 21 20 37 37 H 1.07995 * 125.47946 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.1756 0.0000 4 6 1.4878 2.3944 0.1542 5 8 0.2952 2.3861 0.3969 6 8 2.1437 3.5680 0.0323 7 6 1.3754 4.7611 0.2000 8 1 0.5531 4.5698 0.8896 9 6 2.2548 5.8508 0.7567 10 1 3.2964 5.6523 0.9616 11 6 1.7298 7.1017 1.0036 12 7 0.4616 7.3436 0.7536 13 14 2.8198 8.4523 1.6945 14 1 3.9407 8.7125 0.7558 15 1 2.0214 9.6922 1.8686 16 1 3.3638 8.0257 3.0088 17 6 0.8138 5.2006 -1.1537 18 6 -0.6868 5.4870 -1.2367 19 6 -0.1111 4.2256 -1.8851 20 6 2.2147 -1.2258 0.0005 21 6 2.2131 -2.1652 1.0114 22 6 3.0466 -3.2104 0.5860 23 6 3.5129 -2.8772 -0.6383 24 8 3.0116 -1.6844 -0.9872 25 1 -0.3633 0.0991 1.0228 26 1 -0.3633 0.8363 -0.5973 27 1 -0.3634 -0.9354 -0.4257 28 1 3.2593 1.1793 -0.1179 29 1 0.0922 8.2235 0.9277 30 1 1.4779 5.8159 -1.7608 31 1 -1.2741 5.3620 -0.3271 32 1 -1.0100 6.2904 -1.8987 33 1 -0.0556 4.1997 -2.9734 34 1 -0.3191 3.2709 -1.4021 35 1 1.6754 -2.1073 1.9463 36 1 3.2734 -4.1127 1.1343 37 1 4.1818 -3.4759 -1.2385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345977839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:08 Heat of formation + Delta-G solvation = -40.311633 kcal Electronic energy + Delta-G solvation = -21002.621387 eV Core-core repulsion = 17712.847818 eV Total energy + Delta-G solvation = -3289.773569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.50389 -41.62595 -38.69120 -36.96050 -36.03748 -34.69267 -33.91202 -30.70271 -29.69096 -28.95719 -25.59342 -24.48017 -23.06424 -22.61356 -22.29485 -21.16866 -20.35018 -18.85543 -18.72203 -17.79295 -17.31039 -17.07714 -16.81358 -16.28395 -15.98215 -15.65088 -14.79807 -14.65976 -14.38291 -13.97499 -13.87555 -13.66880 -13.48998 -13.35164 -13.16443 -12.95834 -12.85080 -12.72469 -12.25912 -12.15114 -11.77330 -11.27992 -11.06413 -10.95115 -10.90972 -10.61209 -10.56265 -10.39425 -9.30577 -8.20000 -6.36875 -0.43517 0.65989 1.42493 1.45357 1.52892 1.64017 1.86116 2.10282 2.31273 2.52311 3.07161 3.27284 3.76760 3.79473 4.03941 4.11862 4.19079 4.20967 4.32151 4.37858 4.48116 4.66230 4.68082 4.80979 4.81963 4.92251 4.94078 5.06323 5.12159 5.14215 5.28133 5.31736 5.44363 5.51977 5.55990 5.59194 5.87907 6.07188 6.17807 6.65432 7.03513 7.33344 8.85988 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.027488 B = 0.004089 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.369116 B = 6845.994821 C = 7412.064913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.067 3.933 3 C -0.193 4.193 4 C 0.482 3.518 5 O -0.528 6.528 6 O -0.358 6.358 7 C 0.252 3.748 8 H 0.010 0.990 9 C -0.560 4.560 10 H 0.060 0.940 11 C 0.027 3.973 12 N -0.893 5.893 13 Si 0.973 3.027 14 H -0.268 1.268 15 H -0.277 1.277 16 H -0.271 1.271 17 C -0.135 4.135 18 C -0.120 4.120 19 C -0.200 4.200 20 C -0.036 4.036 21 C -0.168 4.168 22 C -0.222 4.222 23 C -0.025 4.025 24 O -0.179 6.179 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.147 0.853 29 H 0.267 0.733 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.165 0.835 36 H 0.180 0.820 37 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.373 -19.286 -2.716 19.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.066 3.934 3 C -0.212 4.212 4 C 0.332 3.668 5 O -0.423 6.423 6 O -0.274 6.274 7 C 0.198 3.802 8 H 0.028 0.972 9 C -0.597 4.597 10 H 0.078 0.922 11 C -0.175 4.175 12 N -0.529 5.529 13 Si 0.797 3.203 14 H -0.193 1.193 15 H -0.202 1.202 16 H -0.197 1.197 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.237 4.237 20 C -0.085 4.085 21 C -0.187 4.187 22 C -0.240 4.240 23 C -0.093 4.093 24 O -0.075 6.075 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.165 0.835 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.182 0.818 36 H 0.198 0.802 37 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 2.933 -18.924 -2.909 19.370 hybrid contribution 0.324 1.087 0.558 1.264 sum 3.257 -17.837 -2.352 18.283 Atomic orbital electron populations 1.21199 0.88138 1.03507 1.04132 1.19353 0.96352 0.88288 0.89414 1.21412 1.01860 0.89117 1.08841 1.20201 0.86029 0.86101 0.74447 1.90770 1.16921 1.88701 1.45916 1.86201 1.44473 1.15693 1.81058 1.19416 0.90576 0.78309 0.91858 0.97227 1.21180 0.96981 0.95963 1.45601 0.92168 1.25691 0.96715 1.00100 0.95028 1.70149 1.13294 1.23049 1.46375 0.85400 0.78504 0.77544 0.78899 1.19336 1.20190 1.19651 1.22446 0.93177 1.01897 0.97931 1.22264 0.95612 0.97290 1.00548 1.23290 1.06117 0.95000 0.99297 1.19565 1.00646 0.97108 0.91153 1.22510 1.02835 0.93276 1.00115 1.22116 1.02302 1.02175 0.97423 1.25167 1.00939 0.84924 0.98271 1.84188 1.49500 1.32733 1.41056 0.89255 0.90143 0.89663 0.83546 0.92395 0.90613 0.91469 0.89459 0.88150 0.89212 0.81760 0.80230 0.73908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.08 8.43 71.24 0.60 -2.48 16 2 C 0.07 1.92 5.77 -19.63 -0.11 1.81 16 3 C -0.19 -6.58 9.60 22.45 0.22 -6.36 16 4 C 0.48 20.81 6.74 68.57 0.46 21.27 16 5 O -0.53 -23.91 10.22 19.15 0.20 -23.72 16 6 O -0.36 -18.00 9.72 -59.16 -0.57 -18.57 16 7 C 0.25 13.97 2.21 29.85 0.07 14.04 16 8 H 0.01 0.61 6.87 -2.38 -0.02 0.60 16 9 C -0.56 -32.49 8.87 25.60 0.23 -32.27 16 10 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 11 C 0.03 1.50 5.30 84.66 0.45 1.94 16 12 N -0.89 -50.67 11.43 21.45 0.25 -50.42 16 13 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 C -0.14 -6.89 4.46 -10.79 -0.05 -6.94 16 18 C -0.12 -5.64 9.04 30.62 0.28 -5.36 16 19 C -0.20 -8.65 9.79 30.62 0.30 -8.35 16 20 C -0.04 -0.88 6.34 23.03 0.15 -0.74 16 21 C -0.17 -3.37 10.90 22.71 0.25 -3.12 16 22 C -0.22 -3.34 10.87 22.06 0.24 -3.10 16 23 C -0.03 -0.37 12.06 67.11 0.81 0.44 16 24 O -0.18 -4.13 10.67 -6.10 -0.07 -4.19 16 25 H 0.09 2.41 8.03 -2.39 -0.02 2.39 16 26 H 0.08 2.57 6.17 -2.39 -0.01 2.56 16 27 H 0.08 1.82 8.06 -2.38 -0.02 1.80 16 28 H 0.15 4.58 8.06 -2.91 -0.02 4.56 16 29 H 0.27 14.30 8.31 -92.70 -0.77 13.53 16 30 H 0.08 3.99 8.11 -2.38 -0.02 3.97 16 31 H 0.07 3.43 8.05 -2.39 -0.02 3.41 16 32 H 0.09 3.80 8.14 -2.39 -0.02 3.78 16 33 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 34 H 0.09 3.97 5.33 -2.39 -0.01 3.95 16 35 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 36 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 37 H 0.24 1.30 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -67.37 318.53 6.78 -60.59 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 1.07 Total: 19.94 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 3.88 Total: -29.22 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.25 Total: -50.42 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -0.44 Total: -46.48 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -67.37 6.78 -60.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345977839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.279 kcal (2) G-P(sol) polarization free energy of solvation -67.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds