Wall clock time and date at job start Mon Mar 30 2020 02:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35761 * 120.00298 * 2 1 4 4 C 1.41288 * 119.99377 * 5.65728 * 3 2 1 5 5 O 1.21710 * 120.00556 * 354.73479 * 4 3 2 6 6 O 1.35000 * 119.99773 * 174.72854 * 4 3 2 7 7 C 1.42899 * 117.00379 * 179.97438 * 6 4 3 8 8 H 1.09005 * 109.47075 * 330.00882 * 7 6 4 9 9 C 1.50694 * 109.47617 * 210.00540 * 7 6 4 10 10 H 1.08002 * 119.99709 * 359.97438 * 9 7 6 11 11 C 1.37874 * 120.00353 * 180.02562 * 9 7 6 12 12 N 1.31517 * 119.99770 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 120.00154 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47142 * 60.00444 * 13 11 9 15 15 H 1.48500 * 109.47196 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47506 * 299.99900 * 13 11 9 17 17 C 1.52999 * 109.46836 * 90.00183 * 7 6 4 18 18 C 1.52999 * 117.50003 * 231.25577 * 17 7 6 19 19 C 1.53001 * 117.50286 * 299.91328 * 17 7 6 20 20 C 1.41534 * 120.00225 * 180.02562 * 2 1 3 21 21 C 1.38000 * 126.10432 * 294.71352 * 20 2 1 22 22 C 1.40287 * 106.52384 * 179.88135 * 21 20 2 23 23 C 1.35180 * 107.20665 * 0.37974 * 22 21 20 24 24 O 1.33999 * 109.04743 * 359.76191 * 23 22 21 25 25 H 1.08993 * 109.47175 * 58.29290 * 1 2 3 26 26 H 1.08998 * 109.47070 * 178.29729 * 1 2 3 27 27 H 1.09007 * 109.46719 * 298.28634 * 1 2 3 28 28 H 1.07993 * 120.00228 * 185.66009 * 3 2 1 29 29 H 0.97003 * 119.99772 * 180.02562 * 12 11 9 30 30 H 1.09003 * 115.54735 * 85.58578 * 17 7 6 31 31 H 1.09006 * 117.50150 * 215.00577 * 18 17 7 32 32 H 1.09003 * 117.49855 * 0.02562 * 18 17 7 33 33 H 1.09001 * 117.49679 * 359.97438 * 19 17 7 34 34 H 1.09001 * 117.49933 * 144.99352 * 19 17 7 35 35 H 1.07998 * 126.74288 * 0.02562 * 21 20 2 36 36 H 1.07997 * 126.39635 * 180.16102 * 22 21 20 37 37 H 1.08006 * 125.47697 * 179.73857 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.1757 0.0000 4 6 1.4845 2.3963 0.1206 5 8 0.2674 2.4007 0.1281 6 8 2.1644 3.5576 0.2278 7 6 1.3912 4.7536 0.3459 8 1 0.4434 4.6266 -0.1773 9 6 2.1503 5.9047 -0.2621 10 1 3.1258 5.7396 -0.6950 11 6 1.5999 7.1688 -0.2647 12 7 0.4125 7.3701 0.2638 13 14 2.5411 8.5958 -1.0177 14 1 2.8015 8.3150 -2.4525 15 1 1.7376 9.8385 -0.8950 16 1 3.8323 8.7683 -0.3049 17 6 1.1229 5.0434 1.8240 18 6 -0.3259 5.3038 2.2413 19 6 0.3562 3.9878 2.6232 20 6 2.2147 -1.2257 -0.0005 21 6 2.2176 -2.1634 1.0119 22 6 3.0466 -3.2109 0.5832 23 6 3.5131 -2.8763 -0.6407 24 8 3.0117 -1.6834 -0.9887 25 1 -0.3633 0.5401 -0.8742 26 1 -0.3633 -1.0272 -0.0305 27 1 -0.3633 0.4870 0.9050 28 1 3.2618 1.1780 -0.0922 29 1 0.0251 8.2594 0.2616 30 1 1.9038 5.5989 2.3434 31 1 -0.4982 6.0306 3.0351 32 1 -1.0880 5.2681 1.4627 33 1 0.0425 3.0869 2.0958 34 1 0.6328 3.8487 3.6683 35 1 1.6844 -2.1039 1.9492 36 1 3.2728 -4.1140 1.1303 37 1 4.1826 -3.4742 -1.2413 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345977841.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:10 Heat of formation + Delta-G solvation = -26.343039 kcal Electronic energy + Delta-G solvation = -21002.486342 eV Core-core repulsion = 17713.318497 eV Total energy + Delta-G solvation = -3289.167845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.65117 -39.93117 -36.98595 -35.26153 -34.58081 -33.07747 -32.61190 -29.37349 -28.40063 -27.33944 -23.99138 -22.91291 -21.81225 -21.23860 -20.90200 -19.42877 -19.02729 -17.29711 -17.10765 -16.43849 -16.13781 -15.50856 -15.08344 -14.89253 -14.48648 -13.84870 -13.55385 -13.13038 -13.03178 -12.88114 -12.69564 -12.50157 -12.31185 -11.78742 -11.47138 -11.29643 -11.02246 -10.89519 -10.41458 -10.24868 -10.12716 -9.80029 -9.56337 -9.43739 -9.27447 -8.99143 -8.60004 -8.41071 -8.36090 -6.11672 -4.19492 0.78505 1.58933 2.41395 2.93995 3.29125 3.32850 3.35189 3.52976 3.89289 4.38608 4.66576 4.79213 4.94775 4.98677 5.11055 5.21787 5.43831 5.62244 5.66008 5.76382 5.87671 5.90101 5.97716 6.10744 6.17552 6.24936 6.31212 6.43229 6.48788 6.60489 6.73775 6.89863 7.03268 7.19498 7.31280 7.43563 7.66094 7.88536 8.14898 8.65744 8.93540 9.45192 10.94990 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.028141 B = 0.004096 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.734875 B = 6833.546118 C = 7439.364446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.022 3.978 3 C -0.157 4.157 4 C 0.484 3.516 5 O -0.510 6.510 6 O -0.341 6.341 7 C 0.245 3.755 8 H 0.048 0.952 9 C -0.528 4.528 10 H 0.067 0.933 11 C 0.069 3.931 12 N -0.873 5.873 13 Si 0.906 3.094 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.275 1.275 17 C -0.115 4.115 18 C -0.123 4.123 19 C -0.230 4.230 20 C 0.011 3.989 21 C -0.180 4.180 22 C -0.213 4.213 23 C -0.039 4.039 24 O -0.161 6.161 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.093 0.907 28 H 0.137 0.863 29 H 0.264 0.736 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.874 -17.518 1.126 17.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.021 3.979 3 C -0.176 4.176 4 C 0.332 3.668 5 O -0.404 6.404 6 O -0.257 6.257 7 C 0.192 3.808 8 H 0.065 0.935 9 C -0.566 4.566 10 H 0.086 0.914 11 C -0.135 4.135 12 N -0.509 5.509 13 Si 0.733 3.267 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.200 1.200 17 C -0.134 4.134 18 C -0.160 4.160 19 C -0.267 4.267 20 C -0.039 4.039 21 C -0.199 4.199 22 C -0.232 4.232 23 C -0.108 4.108 24 O -0.056 6.056 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.155 0.845 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.171 0.829 36 H 0.169 0.831 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.436 -17.134 0.904 17.330 hybrid contribution 0.551 0.783 -0.077 0.960 sum 2.987 -16.351 0.827 16.642 Atomic orbital electron populations 1.21069 0.88321 1.01531 1.05169 1.19208 0.96091 0.88221 0.94396 1.21565 1.01431 0.90323 1.04281 1.19608 0.86464 0.86082 0.74691 1.90806 1.15039 1.88253 1.46312 1.86226 1.42555 1.15838 1.81066 1.19790 0.92392 0.77627 0.91020 0.93469 1.20889 1.04696 0.91472 1.39535 0.91432 1.24872 0.95098 0.98457 0.95061 1.70041 1.15234 1.22545 1.43062 0.86434 0.79675 0.80844 0.79736 1.20076 1.21139 1.20046 1.22635 0.94788 0.99488 0.96502 1.22350 0.96615 0.95576 1.01503 1.23284 1.08924 0.95053 0.99419 1.19722 0.98121 0.96683 0.89333 1.22168 1.03671 0.93743 1.00362 1.21718 1.02835 1.01582 0.97096 1.24220 1.02294 0.86227 0.98034 1.84201 1.49205 1.31270 1.40901 0.88958 0.92621 0.88910 0.84478 0.92637 0.89455 0.90913 0.89345 0.88820 0.91160 0.82892 0.83149 0.77952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 8.32 36.00 0.30 -1.14 16 2 C 0.02 0.32 5.78 -104.26 -0.60 -0.28 16 3 C -0.16 -2.60 9.60 -39.31 -0.38 -2.97 16 4 C 0.48 9.99 6.84 31.89 0.22 10.21 16 5 O -0.51 -11.03 10.05 -19.43 -0.20 -11.22 16 6 O -0.34 -8.17 9.72 -41.32 -0.40 -8.57 16 7 C 0.24 6.47 2.21 -27.89 -0.06 6.41 16 8 H 0.05 1.37 6.87 -51.93 -0.36 1.01 16 9 C -0.53 -14.78 8.86 -34.44 -0.31 -15.09 16 10 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 11 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 12 N -0.87 -24.27 11.43 55.43 0.63 -23.64 16 13 Si 0.91 21.07 29.54 -169.99 -5.02 16.05 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 C -0.12 -2.84 4.46 -90.62 -0.40 -3.25 16 18 C -0.12 -2.85 9.04 -26.70 -0.24 -3.09 16 19 C -0.23 -4.95 9.79 -26.70 -0.26 -5.21 16 20 C 0.01 0.15 6.28 -38.41 -0.24 -0.10 16 21 C -0.18 -2.01 10.90 -38.90 -0.42 -2.44 16 22 C -0.21 -1.99 10.87 -39.90 -0.43 -2.43 16 23 C -0.04 -0.36 12.06 29.64 0.36 0.00 16 24 O -0.16 -2.03 10.67 4.70 0.05 -1.98 16 25 H 0.09 1.38 7.31 -51.93 -0.38 1.00 16 26 H 0.05 0.63 7.97 -51.93 -0.41 0.21 16 27 H 0.09 1.36 7.15 -51.93 -0.37 0.99 16 28 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.09 2.23 8.11 -51.93 -0.42 1.81 16 31 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.09 2.17 8.05 -51.93 -0.42 1.75 16 33 H 0.09 2.04 5.33 -51.93 -0.28 1.76 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.20 1.04 8.06 -52.48 -0.42 0.61 16 LS Contribution 318.46 15.07 4.80 4.80 Total: -1.00 -30.08 318.46 -7.43 -37.51 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -4.72 Total: 4.64 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -2.57 Total: -17.58 kcal Atomic # 7 Polarization: -24.27 SS G_CDS: 0.63 Total: -23.64 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.55 Total: -21.77 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.08 -7.43 -37.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345977841.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.163 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds